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Paul Thompson's Recent Publications

Most Cited (Top 10) | Key Methods Papers

    Journal Articles

    Thompson PM et al. (2006). Tracking Alzheimer's Disease, Proceedings of the New York Academy of Sciences, Dec. 2006. [NEW REVIEW ARTICLE]

  1. Thompson PM, Dutton RA, Hayashi KM, Toga AW, Lopez OL, Aizenstein HJ, Becker JT (2005). Thinning of the Cerebral Cortex Visualized in HIV/AIDS Reflects CD4+ T-Lymphocyte Decline, Proceedings of the National Academy of Sciences, 102(43):15647-15652, October 25, 2005 [Press Release]. [Article, .pdf, 1.2MB] [Images from the Study]

  2. Thompson PM, Hayashi KM, de Zubicaray G, Janke AL, Rose SE, Semple J, Hong MS, Herman D, Gravano D, Dittmer S, Doddrell DM, Toga AW (2003). Dynamics of Gray Matter Loss in Alzheimer's Disease, Journal of Neuroscience 23(3):994-1005, Feb. 1, 2003. [.pdf, 1.3MB] [Videos] [News Report] [Review Paper] [Video 1; QuickTime .mov] [Video 2; .wmv]

  3. Thompson PM, Hayashi KM, Simon SL, Geaga JA, Hong MS, Sui Y, Lee JY, Toga AW, Ling W, London ED (2004). Structural Abnormalities in the Brains of Human Subjects who Use Methamphetamine, Journal of Neuroscience, 24(26):6028-6036, June 30, 2004. [Press Release, Radio Interview] [Article, .pdf, 643 KB] [News Report]

  4. Thompson PM, Bartzokis G, Hayashi KM, Klunder AD, Lu PH, Edwards N, Hong MS, Yu M, Geaga JA, Toga AW, Charles C, Perkins DO, McEvoy J, Hamer RM, Tohen M, Tollefson GD, Lieberman JA, for the HGDH Study Group (2008). Time-Lapse Mapping Reveals Different Disease Trajectories in Schizophrenia depending on Antipsychotic Treatment, Cerebral Cortex, published online, Oct. 8 2008. [New York Times Interview on these findings] [Time-Lapse Animations] [NEW]

  5. Thompson PM, Lee AD, Dutton RA, Geaga JA, Hayashi KM, Eckert MA, Bellugi U, Galaburda AM, Korenberg JR, Mills DL, Toga AW, Reiss AL (2005). Abnormal Cortical Complexity and Thickness Profiles Mapped in Williams Syndrome, Journal of Neuroscience, 25(16):4146-4158, April 20, 2005. [Article, .pdf, 0.8 MB] [NEW]

  6. Gogtay, N., Giedd, J.N., Lusk, L., Hayashi, K.M., Greenstein, D., Vaituzis, C., Nugent, T.F., Herman, D.H., Classen, L., Toga, A.W., Rapoport, J.L., Thompson, P.M. (2004). Dynamic Mapping of Human Cortical Development during Childhood Through Early Adulthood, Proceedings of the National Academy of Sciences of the USA, 101(21):8174-8179, May 25 2004 [published online, May 17 2004].[Press Release]. [Article, .pdf, 0.7MB] [Time-Lapse Videos]. [High-Resolution Image] [Science Editorial, .pdf, 200KB] [NEW]

  7. Thompson, P.M., Cannon, T.D., Narr, K.L., van Erp, T.G.M., Poutanen, V.P., Huttunen, M., Lönnqvist, J., Standertskjöld-Nordenstam, C.G., Kaprio, J., Khaledy, M., Dail, R., Zoumalan, C.I., Toga, A.W. (2001). Genetic Influences on Brain Structure, Nature Neuroscience, 4(12):1253-1258; Dec. 2001 [published November 5, 2001]. Press Release, Nov. 4, 2001 at 11:00AM PST. Full Article: (.doc, 59 KB); (.pdf, 53 KB); (.pdf with Images, 1.1 MB); (.ram; Streaming Real Audio) (.swf; streaming audio, 413KB)
    video
    [Commentary, .pdf, 94 KB]

  8. Thompson, P.M., Vidal, C., Giedd, J.N., Gochman, P., Blumenthal, J., Nicolson, R., Toga, A.W., Rapoport, J.L. (2001). Mapping Adolescent Brain Change Reveals Dynamic Wave of Accelerated Gray Matter Loss in Very Early-Onset Schizophrenia, Proceedings of the National Academy of Sciences of the USA, vol. 98, no. 20:11650-11655, September 25, 2001. Press Release, Sept. 24, 2001 at 2:00AM PST. Full Article: (.doc, 69 KB) (.pdf, 61 KB).

    video

  9. Thompson, P.M., Giedd, J.N., Woods, R.P., MacDonald, D., Evans, A.C., Toga, A.W. (2000). Growth Patterns in the Developing Human Brain Detected Using Continuum-Mechanical Tensor Mapping, Nature, 404(6774):190-193, Thursday March 9, 2000. Press Release, March 8, 2000 at 11:30AM PST. Full Article (.pdf 0.49MB)

  10. Thompson PM, Hayashi KM, Sowell ER, Gogtay N, Giedd JN, Rapoport JL, de Zubicaray GI, Janke AL, Rose SE, Semple J, Doddrell DM, Wang YL, van Erp TGM, Cannon TD, Toga AW (2004). Mapping Cortical Change in Alzheimer's Disease, Brain Development, and Schizophrenia, Special Issue on Mathematics in Brain Imaging (Thompson PM, Miller MI, Ratnanather JT, Poldrack R, Nichols TE, eds.), NeuroImage, September 2004. [Full Article, with Figures, PDF, 2.3 MB] [NEW; REVIEW OF METHODS]

  11. Gray, J.R., Thompson, P.M. (2004). Neurobiology of Intelligence: Science and Ethics, Nature Reviews Neuroscience, 5:1-13, June 2004, published online, May 19 2004. Full Article (.pdf 0.7MB) [NEW]

  12. Gray, J.R., Thompson, P.M. (2004). Neurobiology of Intelligence: Health Implications?, Discovery Medicine, 22:157-162. Full Article (.pdf 157KB) (.doc 116KB) [NEW]

  13. Zeineh, M.M., Engel, S.A., Thompson, P.M., Bookheimer, S.Y. (2003). Dynamics of the Hippocampus During Encoding and Retrieval of Face-Name Pairs, Science, 299(5606):577-580, January 24 2003.

  14. Thompson, P.M., Hayashi, K.M., de Zubicaray, G., Janke, A.L., Sowell, E.R., Rose, S.E., Semple, J., Herman, D., Hong, M.S., Dittmer, S., Doddrell, D.M., Toga, A.W. (2003). Dynamic Mapping of Alzheimer's Disease, Proceedings of the 19th Colloque Médecine et Recherche, IPSEN Foundation, Paris, March 2003; Springer-Verlag. [NEW]

  15. Sowell, E.R., Thompson, P.M., Peterson, B.S., Welcome, S.E., Henkenius, A.L., Toga, A.W. (2003). Mapping Cortical Change Across the Human Lifespan, Nature Neuroscience, 6(3):309-315, March 2003, published online, Jan. 27, 2003. [NEW]

  16. Ashburner, J., Csernansky, J.G., Davatzikos, C., Fox, N.C., Frisoni, G.B., Thompson, P.M. (2003). Computer-Assisted Imaging to Assess Brain Structure in Healthy and Diseased Brains, Lancet Neurology, 2(2):79-88, February 1, 2003 [Review Article]. [HTML] [.pdf, 4.6MB] [NEW]

  17. Cannon, T.D., Thompson, P.M., van Erp, T., Toga, A.W., Poutanen, V.-P., Huttunen, M., Lönnqvist, J., Standertskjöld-Nordenstam, C.-G., Narr, K.L., Khaledy, M., Zoumalan, C.I., Dail, R., Kaprio, J. (2002). Cortex Mapping Reveals Regionally Specific Patterns of Genetic and Disease-Specific Gray-Matter Deficits in Twins Discordant for Schizophrenia , Proceedings of the National Academy of Sciences of the USA, vol. 99, no. 5: 3228-3233, February 26, 2002. Full Article (.pdf 0.38MB)

  18. Thompson, P.M., Cannon, T.D., Toga, A.W. (2002). Mapping Genetic Influences on Human Brain Structure [Review Paper], Annals of Medicine 2002;34(7-8):523-36. (With Figures; .pdf 1.2MB) (Without Figures; .pdf 379KB)

  19. Thompson, P.M., MacDonald, D., Mega, M.S., Holmes, C.J., Evans, A.C., Toga, A.W., (1997a). Detection and Mapping of Abnormal Brain Structure with a Probabilistic Atlas of Cortical Surfaces, Journal of Computer Assisted Tomography 21(4):567-581. [Di Chiro Outstanding Scientific Paper Award, 1998]

  20. Thompson, P.M., Toga, A.W. (2002). A Framework for Computational Anatomy [Invited Paper], Computing and Visualization in Science, 5:13-34. [Full Article: (With Figures; .pdf 1194K) ]

  21. Thompson, P.M. (2002). Brain Deficit Patterns May Signal Early-Onset Schizophrenia [Invited Article], Psychiatric Times 19(8):30-32, August 2002.

  22. Thompson, P.M., Rapoport, J.L., Cannon, T.D., Toga, A.W. (2002). Imaging the Brain as Schizophrenia Develops: Dynamic and Genetic Brain Maps [Review Article], Primary Psychiatry, 9(11):40-47, November 2002. [Full Article: (.pdf 342K) ] [With figures: p1 p2 p3 p4 p5 p6 ]

  23. Thompson, P.M. (2003). Brain Mapping in Adolescents with Very Early Onset Schizophrenia [Invited Article], Psychiatric Times, March 2003. [Full Article: (.pdf 230K) ]

  24. Thompson, P.M., Toga, A.W. (2003). Cortical Diseases and Cortical Localization [Review Article], Nature Encyclopedia of the Life Sciences (ELS), 2003. [Full Article: (.pdf 284K) ]

  25. Thompson, P.M. (2003). Schizophrenia, World Book Encyclopedia, 2003 [peer-reviewed entry].

  26. Thompson, P.M., Toga, A.W. (2003, 2007). Alzheimer's Disease: MRI Imaging of Progressive Brain Change, Adelman, G., Smith, B.H., [eds.], Encyclopedia of Neuroscience, Nov. 2003; 2nd ed. 2007 [Full Article: (.pdf 368K) ]

  27. Thompson, P.M., Hayashi, K.M., de Zubicaray, G., Janke, A.L., Rose, S.E., Semple, J., Doddrell, D.M., Cannon, T.D., Toga, A.W. (2002). Detecting Dynamic and Genetic Effects on Brain Structure using High-Dimensional Cortical Pattern Matching, Proc. International Symposium on Biomedical Imaging (ISBI2002), Washington, DC, July 7-10, 2002. (With Figures; .pdf 3.4MB)

  28. Thompson, P.M., Toga, A.W., (1997b). Detection, Visualization and Animation of Abnormal Anatomic Structure with a Deformable Probabilistic Brain Atlas based on Random Vector Field Transformations (Invited Paper), Medical Image Analysis 1(4):271-294; paper, with video sequences provided on CD-ROM with Journal Issue. [Animation] Full Article (.pdf 0.99MB)

  29. Thompson, P.M., Schwartz, C. and Toga, A.W., (1996a). High-Resolution Random Mesh Algorithms for Creating a Probabilistic 3D Surface Atlas of the Human Brain, NeuroImage 3(1):19-34, March 1996. Full Article (.pdf 1.37MB)

  30. Thompson, P.M., Schwartz, C., Lin, R.T., Khan, A.A. and Toga, A.W., (1996b). 3D Statistical Analysis of Sulcal Variability in the Human Brain, Journal of Neuroscience, 16(13):4261-4274, July 1996. Full Article (.pdf 1.67MB)

  31. Thompson, P.M. and Toga, A.W., (1996c). A Surface-Based Technique for Warping 3-Dimensional Images of the Brain, IEEE Transactions on Medical Imaging, August 1996, 15(4):1-16. Full Article (.pdf 122KB)

  32. Thompson, P.M., Moussai, J., Zohoori, S., Goldkorn, A., Khan, A.A., Mega, M.S., Small, G.W., Cummings, J.L., Toga, A.W. (1998). Cortical Variability and Asymmetry in Normal Aging and Alzheimer's Disease, Cerebral Cortex 8:492-509, Sept.-Oct. 1998. Full Article (.pdf 612KB)

  33. Thompson, P.M., Woods, R.P., Mega, M.S., Toga, A.W. (2000). Mathematical/Computational Challenges in Creating Deformable and Probabilistic Atlases of the Human Brain (Invited Paper), Human Brain Mapping 9(2):81-92, Feb. 2000. [Excerpt from the Article: Without Figures (.pdf 93K); With Figures (.pdf 889K) ] [More on Disease-Specific Atlases] [Tensor Maps]

  34. Thompson, P.M., Mega, M.S., Woods, R.P., Zoumalan, C.I., Lindshield, C.J., Blanton, R.E., Moussai, J., Holmes, C.J., Cummings, J.L., Toga, A.W. (2001). Cortical Change in Alzheimer's Disease Detected with a Disease-Specific Population-Based Brain Atlas, Cerebral Cortex 11(1): 1-16, January 2001. Full Article (.html 168KB) Full Article (With Figures, .pdf 2.2MB) [Alzheimer's Disease Brain Atlas]

  35. Thompson, P.M., Mega, M.S., Toga, A.W. (2000). Disease-Specific, Probabilistic Brain Atlases, Proc. IEEE International Conference on Computer Vision and Pattern Recognition, and Workshop on Mathematical Methods in Biomedical Image Analysis, Hilton Head Island, South Carolina, June 11-12 2000, pp. 227-234. [Full Paper, with Figures (.pdf 498K)]

  36. Thompson, P.M., Mega, M.S., Vidal, C., Rapoport, J.L., Toga, A.W. (2001). Detecting Disease-Specific Patterns of Brain Structure using Cortical Pattern Matching and a Population-Based Probabilistic Brain Atlas, Proc. 17th International Conference on Information Processing in Medical Imaging (IPMI2001), Davis, CA, USA, June 18-22, 2001, pp. 488-501. [Full Article: Without Figures (.pdf 60K); With All Color Figures (.pdf 401K) ] [All Figures (.html)] [Conference Group Photo (.jpg 347K)]

  37. Thompson, P.M. and Toga, A.W., (1996f). Visualization and Mapping of Anatomic Abnormalities using a Probabilistic Brain Atlas Based on Random Fluid Transformations, Proc. of the International Conference on Visualization in Biomedical Computing, Hamburg, Germany, September 1996, 4:383-392. Also in: Lecture Notes in Computer Science 1131, K.-H. Hohne, R. Kikinis, [eds.], Springer-Verlag.

  38. Thompson, P.M., Hayashi, K.M., de Zubicaray, G., Janke, A.L., Rose, S.E., Semple, J., Hong, M.S., Herman, D., Gravano, D., Doddrell, D.M., Toga, A.W. (2004). Mapping Hippocampal and Ventricular Change in Alzheimer's Disease, NeuroImage, published online, June 1, 2004. [.pdf 792K]

  39. Thompson, P.M., Dutton, R.A., Hayashi, K.M., Lu, A., Lee, S.E., Lee, J.Y., Toga, A.W., Lopez, O.L., Aizenstein, H.J., Becker, J.T. (2006). 3D Mapping of Ventricular and Corpus Callosum Abnormalities in HIV/AIDS, NeuroImage, Jan. 2006 [Epub ahead of print].[.pdf 618K] [NEW]

  40. Vidal CN, Nicolson R, DeVito TJ, Hayashi KM, Geaga JA, Drost DJ, Williamson PC, Rajakumar N, Sui Y, Dutton RA, Toga AW, Thompson PM (2006). Mapping Corpus Callosum Deficits in Autistic Disorder, Biological Psychiatry, Feb. 3 2006 [Epub ahead of print][.pdf 271K] [NEW]

  41. Vidal CN, Hayashi KM, Geaga JA, Sui Y, McLemore LE, Alaghband Y, Giedd JN, Gochman P, Blumenthal J, Gogtay N, Nicolson R, Toga AW, Rapoport JL, Thompson PM (2006). Dynamically Spreading Frontal and Cingulate Deficits Mapped in Adolescents with Schizophrenia, Archives of General Psychiatry, Jan. 2006, 63(1):25-34.[.pdf 476K] [NEW]

  42. Leow AD, Klunder AD, Jack CR, Toga AW, Dale AM, Bernstein MA, Britson PJ, Gunter JL, Ward CP, Whitwell JL, Borowski B, Fleisher A, Fox NC, Harvey D, Kornak J, Schuff N, Studholme C, Alexander GE, Weiner MW, Thompson PM* for the ADNI Preparatory Phase Study (2006). Longitudinal Stability of MRI for Mapping Brain Change Using Tensor-Based Morphometry, NeuroImage, Feb. 7. 2006, [Epub ahead of print][*Corresponding Author]. [.pdf 569K] [NEW]

  43. Becker JT, Davis SW, Hayashi KM, Meltzer CC, Lopez OL, Toga AW, Thompson PM (2006). 3D Patterns of Hippocampal Atrophy in Mild Cognitive Impairment, Archives of Neurology, Jan. 2006, 63(1):97-101. [.pdf 247K] [NEW]

  44. Apostolova LG, Dutton RA, Dinov ID, Hayashi KM, Toga AW, Cummings JL, Thompson PM (2006). Conversion of Mild Cognitive Impairment to Alzheimer's Disease is Predicted by Hippocampal Atrophy Maps, Archives of Neurology, May 2006, 63:693-699, [.pdf] [NEW]

  45. Apostolova LG, Dinov ID, Dutton RA, Hayashi KM, Toga AW, Cummings JL, Thompson PM (2006). 3D Comparison of Hippocampal Atrophy in Amnestic Mild Cognitive Impairment and Alzheimer's Disease, Brain, Oct 3 2006, [Epub ahead of print], [.pdf, 179KB] [NEW]

  46. Frisoni G, Sabattoli F, Lee AD, Dutton RA, Toga AW, Thompson PM (2006). In vivo Neuropathology of the Hippocampal Formation in AD, Neuroimage, Aug. 1 2006, 32(1):104-110. [.pdf] [NEW]

  47. Memoli, F., Sapiro, G., Thompson, P.M. (2004). Implicit Brain Imaging, NeuroImage, Special Issue on Mathematics in Brain Imaging, Thompson, P.M., Miller, M.I., Ratnanather, J.T., Poldrack, R., Nichols, T.E., [eds.], Sept. 2004. [.pdf 939K] [NEW]

  48. Pitiot, A., Delingette, H., Thompson, P.M., Ayache, N. (2004). Expert Knowledge Guided Segmentation System for Brain MRI, NeuroImage, Special Issue on Mathematics in Brain Imaging, Thompson, P.M., Miller, M.I., Ratnanather, J.T., Poldrack, R., Nichols, T.E., [eds.], NeuroImage, September 2004. [.pdf 1.3MB] [NEW]

  49. Chiang MC, Dutton RA, Hayashi KM, Toga AW, Lopez OL, Aizenstein HJ, Becker JT, Thompson PM (2006). 3D Pattern of Brain Atrophy in HIV/AIDS Mapping using Tensor-Based Morphometry, Neuroimage, Oct 9 2006, [Epub ahead of print][.pdf, 1.7MB] [NEW]

  50. Bearden CE, van Erp TGM, Dutton RA, Tran H, Zimmerman L, Geaga JA, Simon TJ, Glahn DG, Cannon TD, Emanuel BS, Toga AW, Thompson PM (2006). Mapping Cortical Thickness in Children with 22q11 Deletions, Cerebral Cortex, Oct 20 2006, [Epub ahead of print][.pdf, 0.8MB] [NEW]

  51. Toga, A.W., Thompson, P.M. (2003). Mapping Brain Asymmetry [Invited Paper], Nature Reviews Neuroscience, 4(1):37-48, January 2003. (With Figures; .pdf 413KB)

  52. Toga, A.W., Thompson, P.M. (2003). Temporal Dynamics of Brain Anatomy, Annual Review of Biomedical Engineering, 5:119-145, August 2003. (Without Figures; .pdf 396KB) (With Figures; .pdf 1.1MB)

  53. Toga, A.W., Thompson, P.M. (2001). The Role of Image Registration in Brain Mapping [Invited Paper], Image and Vision Computing Journal, 19:3-24. [Full Article: (Without Figures; .pdf 164K) ]

  54. Toga, A.W., Thompson, P.M., Mega, M.S., Narr, K.L., Blanton, R.E. (2001). Probabilistic Approaches for Atlasing Normal and Disease-Specific Brain Variability [Invited Paper], Anatomy and Embryology, 204(4):267-282, Oct. 2001. [Full Article (.pdf 1.1MB); With Figures]

  55. Toga, A.W., Thompson, P.M. (2001). Maps of the Brain [Invited Paper], The New Anatomist (Anatomical Record), 265(2):37-53, Apr. 15, 2001. [Full Article (.pdf 0.94MB); With Figures]

  56. Toga AW, Thompson PM (2005). Genetics of Brain Structure and Intelligence [Invited Paper], Annual Review of Neuroscience, 2005. [Full Article (.pdf 0.4MB); With Figures]

  57. Toga AW, Thompson PM, Sowell ER (2006). Mapping Brain Maturation [Review Article], Trends in Neurosciences, Feb. 9, 2006 [Epub ahead of print]. [Full Article (.pdf 1.05MB); With Figures]

  58. Mega, M.S., Chen, S., Thompson, P.M., Woods, R.P., Karaca, T.J., Tiwari, A., Vinters, H., Small, G.W. and Toga, A.W., (1997e). Mapping Pathology to Metabolism: Coregistration of Stained Whole Brain Sections to PET in Alzheimer's Disease, NeuroImage 5:147-153, February 1997.

  59. Mega, M.S., Thompson, P.M., Cummings, J.L., Back, C.L., Xu, L.Q., Zohoori, S., Goldkorn, A., Moussai, J., Fairbanks, L., Small, G.W., Toga, A.W., (1998). Sulcal Variability in the Alzheimer's Brain: Correlations with Cognition, Neurology 50:145-151, January 1998.

  60. Mega, M.S., Thompson, P.M., Mazziotta, J.C., Moussai, J., Xu, L.Q., Toga, A.W. (1998b). The Specific Pattern of Sulcal Deformation in the Alzheimer's Brain: Implications for Functional Imaging in Aging and Dementia, Brain, [submitted].

  61. Mega, M.S., Chu, T., Mazziotta, J.C., Trivedi, K.H., Lim, J., Thompson, P.M., Shah, A., Aron, J., Cole, G., Frautschy, S., Toga, A.W. (1999). Mapping Biochemistry to Metabolism: FDG-PET and Amyloid Burden in Alzheimer's Disease, Neuroreport, 10(14):2911-2917.

  62. Zhou, Y., Thompson, P.M., Toga, A.W. (1999). Automatic Extraction and Parametric Representations of Cortical Sulci, Computer Graphics and Applications, 19(3): 49-55, May 1999.

  63. Dinov, I.D., Mega, M.S., Thompson, P.M., Lee, L., Woods, R.P., Holmes, C.J., Sumners, D., Toga, A.W. (1999). Analyzing Functional Brain Images in a Probabilistic Atlas: A Validation of Subvolume Thresholding, J. Comp. Assisted Tomography 24(1): 128-138, Feb. 2000.

  64. Dinov, I.D., Mega, M.S., Thompson, P.M., Woods, R.P., Sumners, D., Sowell, E.R., Toga, A.W. (2001). Quantitative Comparison and Analysis of Image Registration Using Frequency-Adaptive Wavelet Shrinkage, IEEE Trans. Information Technology in Biomedicine, [in press].

  65. Sowell, E.R., Thompson, P.M., Holmes, C.J., Batth, R., Trauner, D.A., Jernigan, T.L., Toga, A.W. (1999). Localizing Age-Related Changes in Brain Structure between Childhood and Adolescence using Statistical Parametric Mapping, NeuroImage, 9(6):587-597, June 1999.

  66. Sowell, E.R., Thompson, P.M., Holmes, C.J., Jernigan, T.L., Toga, A.W. (1999). In Vivo Evidence for Post-Adolescent Frontal and Striatal Maturation, Nature Neuroscience, Sept./Oct. 1999.

  67. Sowell, E.R., Levitt, J., Thompson, P.M., Holmes, C.J., Blanton, R.E., Kornsand, D.S., Caplan, R., McCracken, J., Asarnow, R., Toga, A.W. (2000). Brain Abnormalities in Early-Onset Schizophrenia Spectrum Disorder Observed with Statistical Parametric Mapping of Structural Magnetic Resonance Images, American Journal of Psychiatry 157(9):1475-84, Sept. 2000.

  68. Sowell, E.R., Thompson, P.M., Mattson, S., Tessner, K., Jernigan, T.L., Riley, E.P., Toga, A.W. (2001). Voxel-Based Morphometric Analyses of the Brain in Children and Adolescents Pre-natally Exposed to Alcohol: Abnormalities in Posterior Temporo-Parietal Cortex, Neuroreport 12(3):515-523, March 2001.

  69. Sowell, E.R., Thompson, P.M., Rex, D.E., Kornsand, D.S., Tessner, K.D., Jernigan, T.L., Toga, A.W. (2002). Mapping Sulcal Pattern Asymmetry and Cortical Gray Matter Distribution In Vivo: Maturation in Perisylvian Cortices, Cerebral Cortex, 12(1):17-26, Jan. 2002.

  70. Sowell, E.R., Mattson, S.N., Thompson, P.M., Jernigan, T.L., Riley, E.P., Toga, A.W. (2001). Mapping Corpus Callosum Morphology and its Neurocognitive Correlates: The Effects of Prenatal Alcohol Exposure, Neurology 57(2):235-44, July 24, 2001.

  71. Sowell, E.R., Tessner, K., Thompson, P.M., Bookheimer, S., Jernigan, T.L., Toga, A.W. (2001). Mapping Neuroanatomical Correlates of Verbal Learning and Visuospatial Abilities in Normal Children and Adolescents using Voxel-Based Morphometry and Sulcal Pattern Analyses, [submitted, July 2000].

  72. Sowell, E.R., Thompson, P.M., Tessner, K.D., Toga, A.W. (2001). Mapping Continued Brain Growth and Gray Matter Density Reduction in Dorsal Frontal Cortex: Inverse Relationships during Post-Adolescent Brain Maturation, Journal of Neuroscience, 21(22):8819-8829, Nov. 15 2001.

  73. Sowell, E.R., Thompson, P.M., Mattson, S.N., Tessner, K.D., Jernigan, T.L., Riley, E.P., Toga, A.W. (2002). Regional Brain Shape Abnormalities Persist into Adolescence after Heavy Prenatal Alcohol Exposure, Cerebral Cortex, 12(8):856-65.

  74. Sowell, E.R., Thompson, P.M., Peterson, B.S., Welcome, S.E., Henkenius, A.L., Toga, A.W. (2002). Mapping Cortical Gray Matter Asymmetry Patterns in Adolescents with Heavy Prenatal Alcohol Exposure, Neuroimage, 17(4):1807-19, Dec. 2002.

  75. Sowell, E.R., Thompson, P.M., Welcome, S.E., Henkenius, A.L., Toga, A.W., Peterson, B.S. (2003). Cortical Abnormalities in Children and Adolescents with Attention-Deficit Hyperactivity Disorder, The Lancet, 22:362(9397):1699-1707, Dec. 2003.

  76. Sowell ER, Thompson PM, Toga AW (2004). Mapping Changes in the Human Cortex throughout the Span of Life, The Neuroscientist, 10(4):372-92, Aug. 2004.

  77. Pitiot, A., Toga, A.W., Thompson, P.M. (2002). Adaptive elastic segmentation of brain MRI via shape-model-guided evolutionary programming, IEEE Transactions on Medical Imaging, 21(8):910-23, Aug. 2002.

  78. Pitiot, A., Bardinet, E., Thompson, P.M., Malandain, G. (2005). Piecewise Affine Registration of Biological Images for Volume Reconstruction, Medical Image Analysis, published online, 2005 [.pdf]

  79. Pitiot, A., Delingette, H., Thompson, P.M. (2003). Learning Object Correspondences with the Observed Transport Shape Measure, Proc. IPMI 2003, eds. Taylor C, Noble A, Ambleside, England, UK. [.pdf 351KB]

  80. Pitiot, A., Bardinet, E., Thompson, P.M., Malandain, G. (2003). Automated Piecewise Affine Registration of 2D Images via Hierarchical Clustering of Dense Similarity Maps, IEEE Transactions on Medical Imaging, Special Issue on Medical Image Registration, 2003 [submitted] [.pdf 1.9MB]

  81. Pitiot, A., Bardinet, E., Malandain, G., Thompson, P.M. (2003). Piecewise Affine Registration of Biomedical Images, Proc. International Workshop on Biomedical Image Registration, Gee, J.C., Maintz, T., [eds.], University of Pennsylvania, Philadelphia, USA, 2003 [.pdf 1.15MB; 10 pages].

  82. Pitiot, A., Delingette, H., Ayache, N., Thompson, P.M. (2003). Expert Knowledge Guided Segmentation System for Brain MRI, Proc. Medical Imaging Computing and Computer Assisted Intervention (MICCAI), Toronto, Canada, November 10-14, 2003 [submitted].

  83. Xu M, Thompson PM, Toga AW (2004). An Adaptive Level Set Segmentation on a Triangulated Mesh, IEEE Transactions on Medical Imaging, 23(2):191-201, Feb. 2004.

  84. Narr, K.L., Thompson, P.M., Sharma, T., Moussai, J., Cannestra, A.F., Toga, A.W. (2000). Mapping Corpus Callosum Morphology in Schizophrenia, Cerebral Cortex, 10(1):40-49, Jan. 2000.

  85. Narr, K.L., Thompson, P.M., Sharma, T., Moussai, J., Blanton, R.E., Anvar, B., Edris, A., Krupp, R., Rayman, J., Khaledy, M., Toga, A.W. (2001). 3D Mapping of Temporo-Limbic Regions and the Lateral Ventricles in Schizophrenia, Biological Psychiatry 50:84-97. [Full Paper, with Figures (.pdf 691K)]

  86. Narr, K.L., Thompson, P.M., Sharma, T., Moussai, J., Zoumalan, C.I., Rayman, J., Toga, A.W. (2001). 3D Mapping of Gyral Shape and Cortical Surface Asymmetries in Schizophrenia: Gender Effects, Am. J. Psychiatry, 158(2), 244-255, Feb. 2001.

  87. Narr, K.L., Cannon, T.D., Woods, R.P., Thompson, P.M., Kim, S., Asunction, D., van Erp, T.G., Poutanen, V.P., Huttunen, M., Lonnqvist, J., Standerksjold-Nordenstam, C.G., Kaprio, J., Mazziotta, J.C., Toga, A.W. (2002). Genetic contributions to altered callosal morphology in schizophrenia, Journal of Neuroscience, May 1, 22(9):3720-9.

  88. Narr, K.L., van Erp, T.G., Cannon, T.D., Woods, R.P., Thompson, P.M., Jang, S., Blanton, R., Poutanen, V.P., Huttunen, M., Lonnqvist, J., Standerksjold-Nordenstam, C.G., Kaprio, J., Mazziotta, J.C., Toga, A.W. (2002). A twin study of genetic contributions to hippocampal morphology in schizophrenia, Neurobiology of Disease, 2002 Oct;11(1):83-95.

  89. Narr, K.L., Sharma, T., Woods, R.P., Thompson, P.M., Sowell, E.R., Rex, D.E., Kim, S., Asuncion, D., Jang, S., Mazziotta, J.C., Toga, A.W. (2003). Increases in Regional Subarachnoid CSF without Apparent Cortical Gray Matter Deficits in Schizophrenia, Am. J. Psychiatry 160(12):2169-80, Dec. 2003.

  90. Narr KL, Thompson PM, Szeszko P, Robinson D, Jang S, Woods RP, Kim S, Hayashi KM, Asunction D, Toga AW, Bilder RM (2004). Regional Specificity of Hippocampal Volume Reductions in First Episode Schizophrenia, NeuroImage 2004 Apr;21(4):1563-75.

  91. Narr KL, Bilder RM, Kim S, Thompson PM, Szeszko P, Robinson D, Luders E, Toga AW (2004). Abnormal Gyral Complexity in First Episode Schizophrenia, Biological Psychiatry 2004 Apr 15; 55(8):859-67.

  92. Narr KL, Bilder RM, Toga AW, Woods RP, Rex DE, Szeszko PR, Robinson D, Sevy S, Gunduz-Bruce H, Wang YP, DeLuca H, Thompson PM (2005). Mapping Cortical Thickness and Gray Matter Concentration in First Episode Schizophrenia, Cerebral Cortex, 2005 Jun;15(6):708-19. 2004 Sep 15; [Epub ahead of print].

  93. Narr KL, Toga AW, Szeszko P, Thompson PM, Woods RP, Robinson D, Sevy S, Wang Y, Schrock K, Bilder RM (2005). Cortical thinning in cingulate and occipital cortices in first episode schizophrenia, Biological Psychiatry, 2005 Jul 1;58(1):32-40.

  94. Narr KL, Bilder RM, Woods RP, Thompson PM, Szeszko P, Robinson D, Ballmaier M, Messenger B, Wang Y, Toga AW (2005). Regional specificity of cerebrospinal fluid abnormalities in first episode schizophrenia, Psychiatry Research, 2005 Dec 27; [Epub ahead of print].

  95. Blanton, R.E., Levitt, J.L., Thompson, P.M., Capetillo-Cunliffe, L.F., Sadoun, T., Williams, T., McCracken, J.T., Toga, A.W. (2001). Mapping Cortical Variability and Complexity Patterns in the Developing Human Brain, Psychiatry Research 107(1):29-43, July 2001.

  96. Blanton, R.E., Levitt, J.L., Peterson, J.R., Fadale, D., Sporty, M.L., Lee, M., To, D., Mormino, E.C., Thompson, P.M., McCracken, J.T., Toga, A.W. (2004). Gender Differences in the Left Inferior Frontal Gyrus in Normal Children, NeuroImage, published online, May 2004.

  97. Kochunov, P., Lancaster, J., Thompson, P.M., Boyer, A., Hardies, J., Fox, P.T. (2000). Validation of an Octree Regional Spatial Normalization Method for Regional Anatomical Matching, Human Brain Mapping 11(3): 193-206, Nov. 2000.

  98. Kochunov, P., Lancaster, J., Thompson, P.M., Woods, R.P., Hardies, J., Fox, P.T. (2001). Regional Spatial Normalization: Towards an Optimal Target, J. Computer Assisted Tomography 25(5):805-816, Sep.-Oct. 2001.

  99. Kochunov, P., Lancaster, J., Thompson, P.M., Toga, A.W., Brewer, P., Hardies, J., Fox, P.T. (2001). An Optimized Individual Target Brain in the Talairach Coordinate System, NeuroImage 17(2):922-927, Oct. 2002.

  100. Kochunov P, Lancaster J, Thompson PM, Boyer A, Hardies J, Fox PT (2000). Validation of an Octree Regional Spatial Normalization Method for Regional Anatomical Matching, Human Brain Mapping 11(3):193-206, November 2000.

  101. Kochunov PK, Lancaster JL, Hardies J, Thompson PM, Woods RP, Cody JD, Hale DE, Laird A, Fox PT (2005). Mapping structural differences of the corpus callosum in individuals with 18q deletions using targetless regional spatial normalization, Human Brain Mapping, 24:325-331.

  102. Kochunov P, Mangin JF, Coyle T, Lancaster J, Thompson P, Riviere D, Cointepas Y, Regis J, Schlosser A, Royall DR, Zilles K, Mazziotta J, Toga A, Fox PT (2005). Age-related morphology trends of cortical sulci, Human Brain Mapping, 26(3):210-20, Nov. 2005.

  103. Haney, S.M., Thompson, P.M., Cloughesy, T.F., Alger, J.R., Toga, A.W. (2001). Tracking Tumor Growth Rates in Patients with Malignant Gliomas: A Test of Two Algorithms, American Journal of Neuroradiology, 22(1):73-82, Jan. 2001. [Full Article (.pdf 537KB); With Figures]

  104. Haney, S.M., Thompson, P.M., Cloughesy, T.F., Alger, J.R., Frew, A., Torres-Trejo, A., Mazziotta, J.C., Toga, A.W. (2001). Mapping Therapeutic Response in a Patient with Malignant Glioma, Journal of Computer Assisted Tomography, 25(4):529-36, July-Aug. 2001.

  105. Haney, S.M., Thompson, P.M., Cloughesy, T.F., Alger, J.R., Frew, A. Toga, A.W. (2000). Cross-Validation of Tissue Classification and Surface Modeling Algorithms for Determining Growth Rates of Malignant Gliomas: Prognostic Value of Growth Rates and MR Spectroscopy, The 2000 International Conference on Mathematics and Engineering Techniques in Medicine and Biological Sciences, Las Vegas, NV, June 2000 [in press]. Full Article (.pdf 0.52MB)

  106. Mazziotta, J.C., Toga, A.W., Evans, A.C., Fox, P.T., Lancaster, J., Zilles, K., Woods, R.P., Paus, T., Simpson, G., Pike, B., Holmes, C.J., Collins, D.L., Thompson, P.M., MacDonald, D., Iacoboni, M., Schormann, T., Amunts, K., Palomero-Gallagher, N., Geyer, S., Parsons, L., Narr, K.L., Kabani, N., Le Goualher, G., Feidler, J., Smith, K., Boomsma, D., Pol, H.H., Cannon, T., Kawashima, R., Mazoyer, B. (2001). A Four-Dimensional Probabilistic Atlas of the Human Brain [Invited Paper], Journal of the American Medical Informatics Association 8(5):401-430, Sept.-Oct. 2001.

  107. Mazziotta, J.C., Toga, A.W., Evans, A.C., Fox, P.T., Lancaster, J., Zilles, K., Woods, R.P., Paus, T., Simpson, G., Pike, B., Holmes, C.J., Collins, D.L., Thompson, P.M., MacDonald, D., Iacoboni, M., Schormann, T., Amunts, K., Palomero-Gallagher, N., Geyer, S., Parsons, L., Narr, K.L., Kabani, N., Le Goualher, G., Boomsma, D., Cannon, T., Kawashima, R., Mazoyer, B. (2001). A Probabilistic Atlas and Reference System for the Human Brain: International Consortium for Brain Mapping (ICBM) [Invited Paper], Philosophical Transactions of the Royal Society of London, Series B (Biological Sciences) 356(1412):1293-1322, Aug. 29, 2001.

  108. Zeineh, M.M., Engel, S.A., Thompson, P.M., Bookheimer, S. (2001). Unfolding the Human Hippocampus with High-Resolution Structural and Functional MRI [Invited Paper], The New Anatomist (Anatomical Record), 265(2):111-120. Apr. 15, 2001. [Full Article (.pdf 1.1MB); With Figures]

  109. Ballmeier, M., Sowell, E.R., Thompson, P.M., Kumar, A., Lavretsky, H., Wellcome, S.E., DeLuca, H., Toga, A.W. (2003). Mapping Brain Size and Cortical Surface Gray Matter Density in Major Depression, , Biological Psychiatry, 2004 Feb 15; 55(4):382-9.

  110. Cannon, T.D., van Erp, T.G.M., Bearden, C.E., Loewy, R., Thompson, P.M., Toga, A.W., Huttunen, M.O., Keshavan, M., Seidman, L.J., Tsuang, M.T. (2003). Early and Late Neurodevelopmental Influences in the Prodrome to Schizophrenia: Contributions of Genes, Environment, and their Interactions, Schizophrenia Bulletin, Special Issue, 2003; 29(4):653-69.

  111. Gu, X., Wang, Y.L., Chan, T., Thompson, P.M., Yau, S.T. (2003). Genus Zero Conformal Mapping and its Application to Brain Surface Mapping, Proc. IPMI 2003, eds. Taylor C, Noble A, Ambleside, England, UK.

  112. Wang, Y.L., Gu, X., Chan, T., Thompson, P.M., Yau, S.T. (2003). Intrinsic Brain Surface Conformal Mapping using a Variational Method, Proc. Medical Imaging Computing and Computer Assisted Intervention (MICCAI), Toronto, Canada, November 10-14, 2003. [Full Article (.pdf 985KB); With Figures]

  113. Gu, X., Wang, Y.L., Chan, T.F., Thompson, P.M., Yau, S.T. (2004). Genus Zero Surface Conformal Mapping and its Application to Brain Surface Mapping, IEEE Transactions on Medical Imaging, vol. 23, no. 7, July 2004 [in press] [.pdf, 7.1MB].

  114. Lancaster, J.L., Kochunov, P.V., Thompson, P.M., Toga, A.W., Fox, P.T. (2003). Asymmetry of the Brain Surface from Deformation Field Analysis, Human Brain Mapping, 19(2):79-89, June 2003.

  115. Levitt, J.G., Blanton, R.E., Smalley, S., Thompson, P.M., Guthrie, D., McCracken, J.T., Sadoun, T., Heinichen, L., Toga, A.W. (2003). Cortical Sulcal Maps in Autism, Cerebral Cortex, 13(7):728-735, July 2003.

  116. Luders, E., Rex, D.E., Narr, K.L., Woods, R.P., Jancke, L., Thompson, P.M., Mazziotta, J.C., Toga, A.W. (2003). Relationships between Sulcal Asymmetries and Corpus Callosum Size: Gender and Handedness Effects, Cerebral Cortex 13(10):1084-93, Oct. 2003.

  117. Luders E, Narr KL, Thompson PM, Rex DE, Jancke L, Toga AW (2004). Gender Differences in Cortical Complexity, Nature Neuroscience July 4, 2004, [epub ahead of print].

  118. Luders E, Narr KL, Woods RP, Rex DE, Thompson PM, Jancke L, Steinmetz H, Toga AW (2004). Mapping Cortical Gray Matter in the Young Adult Brain: Effects of Gender, NeuroImage. 2005 Jun 1;26(2):493-501. Epub 2005 Apr 12.

  119. Luders E, Narr KL, Thompson PM, Jancke L, Toga AW (2004). Parasagittal Asymmetries of the Corpus Callosum, Cerebral Cortex. 2005 May 18; [Epub ahead of print]..

  120. Luders E, Thompson PM, Narr KL, Toga AW, Jancke L, Gaser C (2005). A curvature-based approach to estimate local gyrification on the cortical surface, NeuroImage, 2005 Oct 10; [Epub ahead of print].

  121. Luders E, Narr KL, Thompson PM, Rex DE, DeLuca H, Jancke L, Toga AW (2005). Hemispheric Asymmetries in Cortical Thickness, Cerebral Cortex, Nov. 2 2005 [Epub ahead of print].

  122. Luders E, Narr KL, Thompson PM, Rex DE, Woods RP, Deluca H, Jancke L, Toga AW (2005). Gender Effects on Cortical Thickness and the Influence of Scaling, Human Brain Mapping, 2005 Aug 25; [Epub ahead of print].

  123. Wang, A.Y., Leow, A.D., Protas, H.D., Toga, A.W., Thompson, P.M. (2004). Brain Warping Via Landmark Points and Curves with a Level Set Representation, Proc. Medical Imaging Computing and Computer Assisted Intervention (MICCAI), St. Malo, France, Sept. 26-30 2004. [.pdf, 1.8MB]. [Image 1]

  124. Wang, Y.L., Gu, X., Thompson, P.M., Yau, S.T. (2004). 3D Harmonic Mapping and Tetrahedral Meshing of Brain Imaging Data, Proc. Medical Imaging Computing and Computer Assisted Intervention (MICCAI), St. Malo, France, Sept. 26-30 2004. [.pdf, 1.5MB]. [Image 1] [Image 2]

  125. Van Erp, T.G.M., Rao, V.Y., Tran, H.L., Hayashi, K.M., Cannon, T.D., Toga, A.W., Thompson, P.M. (2004). Surface-Based Analysis of Functional Magnetic Resonance Imaging Data, Proc. Medical Imaging Computing and Computer Assisted Intervention (MICCAI), St. Malo, France, Sept. 26-30 2004. [.pdf, 129KB].

  126. Kindlmann, G.L., Weinstein, D.M., Lee, A.D., Toga, A.W., Thompson, P.M. (2004). Visualization of Anatomic Covariance Tensor Fields, Proc. 26th Annual Meeting of the IEEE Engineering in Medicine and Biology Society (EMBS), San Francisco, CA, Sept. 1-5 2004. [.pdf, 7MB]. [Image, .pdf 726KB] [Image, .jpg 309KB]

  127. Edwards-Lee T, Ringman J, Chung J, Werner J, Morgan A, St. George Hyslop P, Thompson PM, Dutton RA, Mlikotic A, Rogaeva E, Hardy J (2005). An African American Family with Early-Onset Alzheimer Disease and an APP (T714I) Mutation, Neurology, 64(2):377-9, Jan. 25, 2005.

  128. Leow A, Yu CL, Lee SJ, Huang SC, Nicolson R, Hayashi KM, Protas H, Toga AW, Thompson PM (2005). Brain Structural Mapping using a Novel Hybrid Implicit/Explicit Framework Based on the Level-Set Method, NeuroImage, [in press, Jan. 2005][.pdf, 804KB].

  129. London ED, Berman SM, Voytek BT, Simon SL, Monterosso J, Geaga JA, Hong MS, Hayashi KM, Thompson PM, Mandelkern MA, Brody AL, Rawson RA, Ling W (2005). Cerebral Metabolic Dysfunction and Impaired Vigilance in Recently Abstinent Methamphetamine Abusers, Biological Psychiatry, 2005 Aug 9 [Epub ahead of print].

  130. Lin JJ, Salamon N, Lee AD, Dutton RA, Geaga JA, Hayashi KM, Toga AW, Engel J, Thompson PM (2005). 3D Pre-Operative Maps of Hippocampal Atrophy Predict Surgical Outcomes in Temporal Lobe Epilepsy , Neurology, 65:1094-1097, Oct. 11 2005. [1.1MB, .pdf] [Commentary, 54KB, .pdf]

  131. Mega MS, Dinov ID, Mazziotta JC, Manese M, Thompson PM, Lindshield C, Moussai J, Tran N, Olsen K, Zoumalan CI, Woods RP, Toga AW (2005). Automated brain tissue assessment in the elderly and demented population: Construction and validation of a sub-volume probabilistic brain atlas. Neuroimage, 2005 Jul 15;26(4):1009-18.

  132. OHare ED, Kan E, Yoshii J, Mattson SN, Riley EP, Thompson PM, Toga AW, Sowell ER (2005). Mapping cerebellar vermal morphology and cognitive correlates in prenatal alcohol exposure. Neuroreport, 2005 Aug 22;16(12):1285-1290.

  133. Carmichael OT, Aizenstein HA, Davis SW, Becker JT, Thompson PM, Meltzer CC, Liu Y (2005). Atlas-Based Hippocampus Segmentation in Alzheimer's Disease & Mild Cognitive Impairment, Neuroimage. 27(4):979-90, Oct. 1 2005.

  134. Hendry J, DeVito T, Gelman N, Densmore M, Rajakumar N, Pavlosky W, Williamson P, Thompson PM, Drost D, Nicolson R (2005). White Matter Abnormalities in Autism Detected Through Transverse Relaxation Time Imaging, NeuroImage, 2005 Oct 5; [Epub ahead of print].

  135. Silverman DHS, Thompson PM (2006). Structural and Functional Neuroimaging: Focusing on Mild Cognitive Impairment, Applied Neurology, Feb. 2006 [Review Article]. [.pdf, 1.7MB]

  136. Eckert MA, Galaburda AM, Karchemskiy A, Liang A, Thompson PM, Dutton RA, Lee AD, Bellugi U, Korenberg JR, Mills DL, Rose F, Reiss AL (2006). Anomalous Sylvian Fissure Morphology in Williams Syndrome, NeuroImage, published online, July 28 2006.

  137. Cannon TD, Thompson PM, van Erp TGM, Huttunen M, Lonnqvist J, Kaprio J, Toga AW (2006). Mapping Heritability and Molecular Genetic Associations with Cortical Features using Probabilistic Brain Atlases: Methods and Initial Applications to Schizophrenia, Neuroinformatics, 4(1):5-19.

  138. Carmichael OT, Kuller KH, Lopez OL, Thompson PM, Dutton RA, Lu A, Lee SH, Lee JY, Aizenstein HA, Meltzer CC, Liu Y, Toga AW, Becker JT (2006). Ventricular Volume and Dementia Progression in the Cardiovascular Health Study, Neurobiology of Aging, 2006 Feb 24 [Epub ahead of print].

  139. Carmichael OT, Kuller KH, Lopez OL, Thompson PM, Dutton RA, Lu A, Lee SH, Lee JY, Aizenstein HA, Meltzer CC, Liu Y, Toga AW, Becker JT (2006). Acceleration of Cerebral Ventricular Expansion in the Cardiovascular Health Study, Neurobiology of Aging, 2006 July 26 [Epub ahead of print].

  140. Gogtay N, Ordonez A, Herman DH, Hayashi KM, Greenstein D, Vaituzis C, Clasen L, Sharp W, Giedd JN, Nugent TF, Toga AW, Leibenluft E, Thompson PM, Rapoport JL (2006). Dynamic Mapping of Human Hippocampal Development, Hippocampus, 2006 July 6, [Epub ahead of print].

  141. Nicolson R, DeVito T, Vidal CN, Sui Y, Hayashi KM, Drost DJ, Williamson PC, Rajakumar N, Toga AW, Thompson PM (2006). Detection and Mapping of Hippocampal Abnormalities in Autism, Psychiatry Neuroimaging Research, Feb. 2006.

  142. Lu LH, Leonard CM, Thompson PM, Kan E, Jolley J, Welcome SE, Toga AW, Sowell ER (2006). Normal Developmental Changes in Inferior Frontal Gray Matter are Associated with Improvement in Phonological Processing: A Longitudinal MRI Analysis, Cerebral Cortex, 2006 Jun 16, [Epub ahead of print].

  143. Gaser C, Luders E, Thompson PM, Lee AD, Dutton RA, Geaga JA, Hayashi KM, Bellugi U, Galaburda AM, Korenberg JR, Mills DL, Toga AW, Reiss AL (2006). Increased Local Gyrification Mapped in Williams Syndrome, NeuroImage, 2006 Oct 15; 33(1):46-54. Epub 2006 Aug 9.

  144. Sowell ER, Peterson BS, Thompson PM, Kan E, Yoshii J, Toga AW (2006). Sex Differences in Cerebral Cortical Thickness Mapped in 176 Healthy Individuals between 7 and 87 Years, Cerebral Cortex, 2006 Aug 31; [Epub ahead of print].

  145. Luders E, Narr KL, Zaidel E, Thompson PM, Toga AW (2006). Gender effects on Callosal Thickness in Scaled and Unscaled Space, NeuroReport 2006 July 31; 17(11):1103-6.

  146. Xu MH, Thompson PM, Toga AW (2006). Adaptive Reproducing Kernel Particle Method for Extraction of the Cortical Surface, IEEE Transactions on Medical Imaging, June 2006, 25(6):1-13. [.pdf, 5.1MB]

  147. Lui LM, Wang YL, Chan TF, Thompson PM (2006). Landmark Constrained Genus Zero Surface Conformal Mapping and Its Application to Brain Mapping Research, Journal of Applied Numerical Mathematics, March 2006.

  148. Lin JJ, Salamon N, Lee AD, Dutton RA, Geaga JA, Hayashi KM, London ED, Luders E, Toga AW, Engel J, Thompson PM (2006). Reduced Neocortical Thickness and Complexity Mapped in Mesial Temporal Lobe Epilepsy with Hippocampal Sclerosis, Cerebral Cortex, 2006 Nov 6; [Epub ahead of print].[.pdf, 1.8MB]

  149. Carmichael OT, Kuller LH, Lopez OL, Thompson PM, Dutton RA, Lu A, Lee SH, Lee JY, Aizenstein HA, Meltzer CC, Liu Y, Toga AW, Becker JT (2007). Cerebral Ventricular Changes Associated With Transitions Between Normal Cognitive Function, Mild Cognitive Impairment, and Dementia. Alzheimer Dis Assoc Disord. 2007 January/March; 21(1):14-24.

  150. Lenroot RK, Gogtay N, Greenstein DK, Molloy E, Wallace GL, Clasen LS, Blumenthal JD, Lerch J, Zijdenbos AP, Evans AC, Thompson PM, Giedd JN (2007). Sexual Dimorphism of Brain Developmental Trajectories during Childhood and Adolescence, NeuroImage, published online, April 6 2007, doi: 10.1016/j.neuroimage.2007.03/053.

  151. Bearden CE, Thompson PM, Dalwani M, Hayashi KM, Lee AD, Glahn DC, Nicoletti M, Trakhenbroit M, Brambilla P, Sassi RB, Mallinger AG, Frank E, Kupfer D, Soares JC (2007). Cortical Gray Matter Density Increases in Lithium-Treated Patients with Bipolar Disorder, Biological Psychiatry, April 2007. [.pdf, 4.2MB]

  152. Bearden CE, Thompson PM, Dalwani M, Hayashi KM, Lee AD, Glahn DC, Brambilla P, Sassi RB, Mallinger A, Frank E, Kupfer DJ, Nicoletti M, Soares JC (2007). Reply: Lithium and Increased Cortical Gray Matter-More Tissue or More Water? Biological Psychiatry. 2007 Aug 16; [Epub ahead of print]. [.pdf, 48KB]

  153. Small GW, Kepe V, Ercoli LM, Siddarth P, Bookheimer SY, Miller KJ, Lavretsky H, Burggren AC, Cole GM, Vinters HV, Thompson PM, Huang SC, Satyamurthy NE, Phelps ME, Barrio JR (2006). PET of brain amyloid and tau in mild cognitive impairment. New England Journal of Medicine, 2006 Dec 21;355(25):2652-63.

  154. Leow AD, Yanovsky I, Chiang MC, Lee AD, Klunder AD, Lu A, Becker JT, Davis SW, Toga AW, Thompson PM (2007). Statistical properties of Jacobian maps and inverse-consistent deformations in non-linear image registration, IEEE Transactions on Medical Imaging, 26(6):822-832, May 2007. [.pdf, 6.7MB]

  155. Sowell ER, Peterson BS, Thompson PM, Kan E, Yoshii J, Toga AW (2006). Sex Differences in Cortical Thickness Mapped in 176 Healthy Individuals between 7 and 87 years, Cerebral Cortex, 2006 Aug 31; [Epub ahead of print].

  156. Kochunov PK, Thompson PM, Coyle TR, Lancaster JL, Kochunov V, Royall D, Mangin JF, Rivire D, Fox PT (2007). Relationship among Neuroimaging Markers of Cerebral Atrophy during Normal Aging. Human Brain Mapping, 2007 Feb 8; [Epub ahead of print]

  157. Kochunov P, Thompson PM, Lancaster JL, Bartzokis G, Smith S, Behrens T, Laird A, Fox PT (2006). Relationship between white matter fractional anisotropy and other indices of cerebral health in normal aging: a Tract Based Spatial Statistics study of aging, NeuroImage, Dec. 26 2006, [Epub ahead of print].

  158. Fillard P, Arsigny W, Pennec X, Hayashi KM, Thompson PM, Ayache N (2006). Measuring Brain Variability by Extrapolating Sparse Tensor Fields Measured on Sulcal Lines, NeuroImage, Nov. 17 2006 [Epub ahead of print]. [.pdf, 2MB]

  159. Lee AD, Leow AD, Lu A, Reiss AL, Hall S, Toga AW, Thompson PM (2006). 3D Pattern of Brain Abnormalities in Fragile X Syndrome Visualized using Tensor-Based Morphometry, NeuroImage, 2006 Dec 7; [Epub ahead of print]. [.pdf, 1.8MB]

  160. Narr KL, Woods RP, Thompson PM, Szeszko P, Robinson D, Dimtcheva T, Gurbani M, Toga AW, Bilder RM (2006). Relationships between IQ and regional cortical gray matter thickness in healthy adults, Cerebral Cortex, 2006 Nov 21; [Epub ahead of print].

  161. Scher AI, Xu Y, Korf ESC, White LR, Scheltens P, Toga AW, Thompson PM, Hartley SW, Witter MP, Valentino DJ, Launer LJ (2007). Hippocampal Shape Analysis in Alzheimer's Disease: A Population- Based Study, NeuroImage, 36(1):8-18, 15 May 2007.

  162. Luders E, Narr KL, Zaidel E, Thompson PM, Toga AW (2006). Gender effects on callosal thickness in scaled and unscaled space, Neuroreport 2006 Jul 31;17(11):1103-6.

  163. Narr KL, Bilder RM, Luders E, Thompson PM, Woods RP, Robinson D, Szeszko P, Dimtcheva T, Gurbani M, Toga AW (2006). Asymmetries of Cortical Shape: Effects of Handedness, Gender and Schizophrenia, NeuroImage, 2006 Dec 11; [Epub ahead of print].

  164. Lui LM, Wang Y, Chan TF, Thompson PM (2006). Landmark constrained genus zero surface conformal mapping and its application to brain mapping research, Special Issue of the Journal of Applied Numerical Mathematics for the 2005 International Conference on Scientific Computing, Editor: Zhilin Li. [.pdf, 1.2MB]

  165. Apostolova LG, Steiner CA, Akopyan GG, Dutton RA, Hayashi KM, Toga AW, Cummings JL, Thompson PM (2007). 3D gray matter atrophy mapping in mild cognitive impairment and mild Alzheimer disease, Archives of Neurology, October 1, 2007; 64(10): 1489 - 1495. [.pdf, 432KB]

  166. Apostolova LG, Lu P, Rogers S, Dutton RA, Hayashi KM, Toga AW, Cummings JL, Thompson PM (2007). 3D mapping of language networks in clinical and pre-clinical Alzheimer's disease, Brain and Language, 2007 May 5; [Epub ahead of print] [.pdf, 1.2MB]

  167. Apostolova LG, Lu P, Rogers S, Dutton RA, Hayashi KM, Toga AW, Cummings JL, Thompson PM (2006). 3D mapping of Mini-mental State Examination performance in clinical and pre-clinical Alzheimer's disease, Alzheimer Disease & Associated Disorders, 2006 October/December;20(4):224- 231. [.pdf, 448KB]

  168. Nugent TF, Herman DH, Ordonez A, Greenstein D, Hayashi KM, Lenane M, Clasen L, Jung D, Toga AW, Giedd JN, Rapoport JL, Thompson PM, Gogtay N (2006). Dynamic Mapping of Hippocampal Development in Childhood Onset Schizophrenia, Schizophrenia Research, 2007 Feb;90(1-3):62-70. Epub 2006 Dec 11. [.pdf, 636KB]

  169. Wang YL, Lui LM, Gu X, Hayashi KM, Chan TF, Toga AW, Thompson PM, Yau ST (2007). Brain Surface Parameterization using Riemann Surface Structure, IEEE Transactions on Medical Imaging, 26(2): 853-865, June 2007.

  170. Shi YG, Thompson PM, Dinov ID, Osher SJ, Toga AW (2007). Direct Cortical Mapping via Solving Partial Differential Equations on Implicit Surfaces, Medical Image Analysis 11 (3): 207-223 JUN 2007.

  171. Gee JC, Thompson PM (2007). Guest Editorial: Special Issue on Computational Neuroanatomy, IEEE Transactions on Medical Imaging, Special Issue on Computational Neuroanatomy (eds.. Gee JC, Thompson PM), April 2007. [.pdf, 300KB]

  172. Tu Z, Zheng S, Yuille AL, Reiss AL, Dutton RA, Lee AD, Galaburda AM, Dinov ID, Thompson PM, Toga AW (2007). Automated Extraction of the Cortical Sulci Based on a Supervised Learning Approach, IEEE Transactions on Medical Imaging, Special Issue on Computational Neuroanatomy (eds.. Gee JC, Thompson PM), April 2007.

  173. Tu Z, Narr KL, Dollar P, Dinov ID, Thompson PM, Toga AW (2007). Brain Anatomical Structure Segmentation by Hybrid Discriminative/Generative Models, IEEE Transactions on Medical Imaging, Special Issue on Computational Neuroanatomy (eds.. Gee JC, Thompson PM), 2008 Apr;27(4):495-508.

  174. Chiang MC, Leow AD, Dutton RA, Barysheva M, Rose S, McMahon KL, de Zubicaray GI, Toga AW, Thompson PM (2008). Fluid Registration of Diffusion Tensor Images Using Information Theory, IEEE Transactions on Medical Imaging, 2008 Apr;27(4):442-56.

  175. Joshi AA, Shattuck DW, Thompson PM, Leahy RM (2007). Simultaneous Surface and Volumetric Brain Registration using Harmonic Mappings, IEEE Transactions on Medical Imaging, 2007.

  176. Lepore N, Brun CA, Chou YY, Chiang MC, Dutton RA, Hayashi KM, Lu A, Lopez OL, Aizenstein HJ, Toga AW, Becker JT, Thompson PM (2008). Generalized Tensor-Based Morphometry of HIV/AIDS Using Multivariate Statistics on Strain Matrices and their application to HIV/AIDS, IEEE Transactions on Medical Imaging, Jan. 2008. [.pdf, 0.9MB]

  177. Tu Z, Narr KL, Dinov ID, Thompson PM, Toga AW (2006). Brain Anatomical Structure Segmentation by Hybrid Discriminative/Generative Models, Proc. Neural Information Processing Systems Annual Conference (NIPS2006), Vancouver, BC, December 4-7, 2006.

  178. Sun D, Velakoulis D, Yung A, McGorry PD, Wood SJ, Phillips L, van Erp TGM, Thompson PM, Toga AW, Stuart GW, Cannon TD, Pantelis C (2007). Progressive Brain Structural Changes Mapped as Psychosis Develops in At Risk Individuals, Schizophrenia Research, 2008 Feb 8; [epub ahead of print].

  179. Luders E, Di Paola M, Tomaiuolo F, Thompson PM, Toga AW, Vicari S, Petrides M, Caltagirone C (2007). Callosal Morphology In Williams Syndrome - A New Evaluation Of Shape And Thickness, Neuroreport, 18(3):203-207, Feb. 2007.

  180. Frisoni GB, Pievani M, Testa C, Sabattoli F, Bresciani L, Miniussi M, Bonetti M, Beltramello A, Hayashi KM, Toga AW, Thompson PM (2007). The topography of gray matter involvement in early and late- onset Alzheimer's disease, Brain, 130: 720-730 Part 3 MAR 2007. [.pdf, 456KB]

  181. Apostolova LG, Akopyan GG, Partiali N, Steiner CA, Dutton RA, Hayashi KM, Dinov ID, Toga AW, Cummings JL, Thompson PM (2007). Structural correlates of apathy in Alzheimer's disease, Dementia and Geriatric Cognitive Disorders, 2007;24:91-97. Published online on June 6 2007- DOI: 10.1159/000103914.

  182. Shi Y, Thompson PM, de Zubicaray GI, Rose SE, Tu Z, Dinov AD, Toga AW (2007). Direct Mapping of Hippocampal Surfaces with Intrinsic Shape Context, NeuroImage, 2007 Sep 1;37(3):792-807. Epub 2007 May 23.

  183. Toga AW, Thompson PM (2007). What is Where and Why it is Important, NeuroImage, Peer-Reviewed Invited Commentary on a paper by Devlin J, Poldrack R 'In Praise of Tedious Anatomy', Feb. 9 2007. [.pdf, 188KB]

  184. Bearden CE, van Erp TGM, Thompson PM, Toga AW, Cannon TD (2007). Cortical mapping of genotype-phenotype relationships in schizophrenia, Human Brain Mapping, 28(6): 519-532, June 2007, Special Issue on Genomic Imaging, published online, April 17 2007. [.pdf, 532KB]

  185. Glahn DC, Thompson PM, Blangero J (2007). Neuroimaging Endophenotypes: Strategies for Finding Genes Influencing Brain Structure, Human Brain Mapping, Special Issue on Genomic Imaging, published online, April 17 2007. [.pdf, 100KB]

  186. Glahn DC, Paus T, Thompson PM (2007). Imaging Genomics: Mapping the Influence of Genetics on Brain Structure and Function, Human Brain Mapping, Special Issue on Genomic Imaging, published online, April 17 2007. [.pdf, 100KB]

  187. Chiang MC, Reiss AL, Lee AD, Bellugi U, Galaburda AM, Korenberg J, Mills DL, Toga AW, Thompson PM (2007). 3D Pattern of Brain Abnormalities in Williams Syndrome Visualized using Tensor-Based Morphometry, NeuroImage, 2007 Apr 20; [Epub ahead of print]. [.pdf, 788KB]

  188. Lui LM, Wang YL, Chan TF, Thompson PM (2007). Brain Anatomical Feature Detection by Solving Partial Differential Equations on a General Manifold, Journal of Discrete and Continuous Dynamical Systems-Series B, 7(3):605-618, May 2007. [.pdf, 440KB]

  189. Apostolova L, Thompson PM (2007). Brain Mapping as a Tool to Study Neurodegeneration, Special Issue of Neurotherapeutics, [Review], July 2007. [.pdf, 4MB]

  190. Gogtay N, Ordonez A, Herman DH, Hayashi KM, Greenstein D, Vaituzis C, Clasen L, Sharp W, Giedd JN, Nugent TF, Toga AW, Leibenluft E, Thompson PM, Rapoport JL (2007). Dynamic Mapping of Cortical Development Before and After the Onset of Pediatric Bipolar Illness, Journal of Child Psychology and Psychiatry, 2007 Sep;48(9):852-62. [.pdf, 520KB]

  191. Narayan VM, Narr KL, Kumari V, Woods RP, Toga AW, Thompson PM, Sharma T (2007). Regional Cortical Thinning in Anti-social Personality Disorder and Schizophrenia, American Journal of Psychiatry, 164:1418-1427, September 2007.

  192. Bearden CE, Thompson PM, Dutton RA, Frey B, Peluso M, Nicoletti M, Diershke N, Hayashi KM, Klunder AD, Glahn D, Brambilla P, Sassi RB, Mallinger AG, Soares JC (2007). Three-dimensional mapping of hippocampal anatomy in unmedicated and lithium-treated patients with bipolar disorder, Neuropsychopharmacology, 2007 Aug 8; [Epub ahead of print]. [.pdf, 352KB]

  193. Rusch N, Luders E, Zahn R, Lieb K, Ebert D, Thompson PM, Toga AW, Tebartz van Elst L (2007). Corpus callosum abnormalities in women with borderline personality disorder and comorbid attention-deficit hyperactivity disorder, Journal of Psychiatry & Neuroscience, 2007; 32(6):417-422. [.pdf, 308KB]

  194. Foland LC, Altshuler LL, Bookheimer SY, Eisenberger NI, Townsend J, Thompson PM (2007). Evidence for Deficient modulation of amygdala response by prefrontal cortex in bipolar mania, Psychiatry Research: Neuroimaging. 2007 Dec 4. [.pdf, 830KB]

  195. Hua X, Leow AD, Levitt JG, Caplan R, Thompson PM, Toga AW (2007). Detecting Brain Growth Patterns in Normal Children using Tensor-Based Morphometry, Human Brain Mapping, December 6, 2007.

  196. Sowell ER, Mattson SN, Kan E, Thompson PM, Riley E, Toga AW (2008). Abnormal Cortical Thickness and Brain-Behavior Correlation Patterns in Individuals with Heavy Prenatal Alcohol Exposure, Cerebral Cortex, 2008 18(1):136-144; doi:10.1093/cercor/bhm039.

  197. Gothelf D, Furfaro JA, Eckert MA, Hall SS, O'Hara R, Erba HW, Ringel J, Hayashi KM, Patnaik S, Golianu B, Kraemer HC, Thompson PM, Piven J, Reiss AL (2007). Neuroanatomy of Fragile X Syndrome is Associated with Aberrant Behavior and FMRP, Annals of Neurology, 2007 Oct 11, epub ahead of print.

  198. Boyes R, Gunter J, Frost C, Janke AL, Yeatman T, Hill DLG, Bernstein M, Thompson PM, Weiner MW, Schuff N, Alexander G, Killiany RJ, DeCarli C, Jack CR, Fox NC (2008). Intensity non-uniformity correction using N3 on 3-T scanners with multichannel phased array coils, NeuroImage, 2008 Feb 15;39(4):1752-1762. Epub 2007 Oct 30.

  199. Weber B, Lueders E, Faber J, Richter S, Quesada C, Urbach H, Thompson PM, Toga AW, Elger CE, Helmstaeder C (2007). Distinct regional atrophy in the corpus callosum of patients with temporal lobe epilepsy, Brain, published online August 30 2007. [.pdf, 584KB]

  200. Ballmaier M, Kumar A, Elderkin-Thompson V, Narr KL, Luders E, Thompson PM, Hojatkashani C, Pham D, Heinz A, Toga AW (2007). Mapping callosal morphology in early- and late-onset elderly depression: An Index of Distinct Changes in Cortical Connectivity, Neuropsychopharmacology. 2007 Aug 22; [Epub ahead of print]. [.pdf, 164KB]

  201. Chou YY, Lepore N, de Zubicaray GI, Carmichael OT, Becker JT, Toga AW, Thompson PM (2008). Automated Ventricular Mapping with Multi-Atlas Fluid Image Alignment Reveals Genetic Effects in Alzheimer's Disease, NeuroImage, published online, Feb. 2008.

  202. Apostolova L, Thompson PM (2007). Mapping Progressive Brain Structural Changes in Early Alzheimer's Disease and Mild Cognitive Impairment, Special Issue of Neuropsychologia, ed. Gael Chetelat; published online, Dec. 21 2007.

  203. Hamilton LS, Narr KL, Luders E, Szeszko PR, Thompson PM, Bilder RM, Toga AW (2007). Asymmetries of cortical thickness: Effects of handedness, sex, and schizophrenia, NeuroReport, 2007 Sep 17;18(14):1427-1431. [.pdf, 224KB]

  204. Bearden CE, Soares JC, Klunder AD, Nicoletti M, Diershke N, Hayashi KM, Brambilla P, Sassi RB, Axelson D, Ryan N, Birmaher B, Thompson PM (2008). Three-dimensional mapping of hippocampal anatomy in adolescents with bipolar disorder, Journal of the American Academy of Child and Adolescent Psychiatry, 2008 Mar 19; [Epub ahead of print].

  205. Xu Y, Valentino DJ, Scher AI, Dinov ID, White LR, Thompson PM, Launer LJ, Toga AW (2008). Age effects on hippocampal structural changes in old men: The HAAS, Neuroimage, 40(3):1003-15, April 15 2008.

  206. Hua X, Leow AD, Lee S, Klunder AD, Toga AW, Lepore N, Chou YY, Brun C, Chiang MC, Barysheva M, Jack CR, Bernstein MA, Britson PJ, Ward CP, Whitwell JL, Borowski B, Fleisher A, Fox NC, Boyes R, Barnes J, Harvey D, Kornak J, Schuff N, Boreta L, Alexander GE, Weiner MW, Thompson PM*, For the ADNI Study (2008). 3D Characterization of Brain Atrophy in Alzheimer's Disease and Mild Cognitive Impairment using Tensor-based Morphometry, NeuroImage, published online, Feb. 21 2008.

  207. Small GW, Bookheimer SY, Thompson PM, Cole GM, Huang SC, Kepe V, Barrio JR (2008). Current and Future Uses of Neuroimaging for Cognitively Impaired Patients, Lancet Neurology 7:161-172.

  208. Bearden CE, Glahn DC, Lee AD, Chiang MC, van Erp TGM, Cannon TD, Reiss AL, Toga AW, Thompson PM (2008). Neural Phenotypes of Common and Rare Genetic Variants, Biological Psychiatry, Special Issue on Genetics and Imaging in Neuroscience, epub online, Feb. 23 2008.

  209. Foland LC, Altshuler LL, Sugar CA, Leow AD, Townsend J, Narr KL, Toga AW, Thompson PM (2008). Increased volume of the amygdala and hippocampus in bipolar subjects treated with lithium, NeuroReport, 19(2):221-224.

  210. Gogtay N*, Lu A*, Leow AD, Klunder AD, Lee AD, Chavez A, Greenstein D, Giedd JN, Toga AW, Rapoport JL, Thompson PM (2008). 3D Growth Pattern Abnormalities Visualized in Childhood-Onset Schizophrenia using Tensor-Based Morphometry, Proceedings of the National Academy of Sciences, August 28 2008. [*equal contribution]

  211. Braskie MN, Klunder AD, Hayashi KM, Protas H, Kepe V, Miller KJ, Huang SC, Barrio JR, Ercoli L, Toga AW, Bookheimer SY, Small GW, Thompson PM (2008). Dynamic Trajectory of Cortical Plaque and Tangle Load Correlates with Cognitive Impairment in Normal Aging and Alzheimer's Disease, Neurobiology of Aging, in press, Sept. 23 2008.

  212. Chou YY, Lepore N, Chiang MC, Avedissian C, Barysheva M, McMahon KL, de Zubicaray GI, Meredith M, Wright MJ, Toga AW, Thompson PM (2008). Mapping Genetic Influences on Ventricular Structure in Twins, NeuroImage, published online, Nov. 7 2008.

  213. Leow AD, Zhu S, Zhan L, de Zubicaray GI, Meredith M, Wright M, Toga AW, Thompson PM (2008). The Tensor Distribution Function, Magnetic Resonance in Medicine, Oct. 2008, in press.

  214. Lenglet C, Campbell JSW, Descoteaux M, Haro G, Savadjiev P, Wassermann D, Anwander A, Deriche R, Pike GB, Sapiro G, Siddiqi K, Thompson PM (2008). Mathematical Methods for Diffusion MRI Processing, NeuroImage, Special Issue on Mathematics in Brain Imaging, ed. Thompson PM, Miller MI, Poldrack R, Nichols T, Taylor J, Worsley KJ, Ratnanather T, in press, Sept. 11 2008.

  215. Michie PT, Budd TW, Fulham WR, Hughes ME, Jamadar, S, Johnston P, Karayanidis F, Matthews N, Rasser PE, Schall U, Thompson PM, Todd J, Ward PB (2008). The potential for new understandings of normal and abnormal cognition by integration of neuroimaging and behavioral data: Not an exercise in Bringing Coals to Newcastle, Brain Imaging and Behavior, Special Issue (ed.: J.D. van Horn et al.), in press, August 2008.

  216. Klunder AD, Chiang MC, Dutton RA, Lee SE, Toga AW, Lopez OL, Aizenstein HJ, Becker JT, Thompson PM (2008). Mapping Cerebellar Degeneration in HIV/AIDS, NeuroReport, 2008 Sep 18. [Epub ahead of print].

  217. Morra J, Tu Z, Apostolova LG, Green AE, Avedissian C, Madsen SK, Parikshak N, Hua X, Toga AW, Jack CR, Schuff N, Weiner MW, Thompson PM (2008). Validation of a Fully Automated 3D Hippocampal Segmentation Method Using Subjects with Alzheimer's Disease, Mild Cognitive Impairment, and Elderly Controls, NeuroImage, 2008 Jul 16. [Epub ahead of print].

  218. Morra J, Tu Z, Apostolova LG, Green AE, Avedissian C, Madsen SK, Parikshak N, Toga AW, Jack CR, Schuff N, Weiner MW, Thompson PM (2008). Automated Mapping of Hippocampal Atrophy in 1-Year Repeat MRI Data in 490 Subjects with Alzheimer's Disease, Mild Cognitive Impairment, and Elderly Controls, NeuroImage, Special Issue on Mathematics in Brain Imaging, ed. Thompson PM, Miller MI, Poldrack R, Nichols T, et al., published online, Nov. 8 2008.

  219. Thompson PM, Miller MI, Poldrack RA, Nichols TE, Taylor JE, Worsley KJ, Ratnanather JT (2008). Preface: Special Issue on Mathematics in Brain Imaging, NeuroImage, published online, Nov. 5 2008.

  220. Blokland GAM, McMahon KL, Hoffman J, Zhu G, Meredith M, Martin NG, Thompson PM, de Zubicaray GI, Wright MJ (2008). Quantifying the heritability of task-related brain activation and performance during the N-back working memory task: a twin fMRI study, Biological Psychiatry, 2008 Sep;79(1):70-9. Epub 2008 Mar 16.

  221. Harris P, Alcantara D, Amenta N, Lopez OL, Eir’ksd—ttir G, Sigurdsson S, Gudnason V, Thompson PM, Launer L, Carmichael OT (2008). Localized Measures of Callosal Atrophy Are Associated with Late-Life Hypertension: AGES-Reykjavik Study, NeuroImage, 2008 Jul 18. [Epub ahead of print].

  222. Luders E, Narr KL, Hamilton LS, Phillips OR, Thompson PM, Valle JS, Del'Homme M, Strickland T, Toga AW, McCracken JT, Levitt JG (2008). Decreased Callosal Thickness in Attention Deficit / Hyperactivity Disorder (ADHD), Biological Psychiatry, 2008 Oct 6 [Epub ahead of print].

  223. de Zubicaray GI, Chiang MC, McMahon KL, Shattuck DW, Toga AW, Martin NG, Wright MJ, Thompson PM (2008). Meeting the challenges of neuroimaging genetics, Brain Imaging and Behavior, Special Issue (ed.: J.D. van Horn et al.), published online, August 2008.

    Engineering Conference Papers (Peer-Reviewed: IPMI, MICCAI, ISBI):

  224. Leow AD, Huang SC, Geng A, Becker JT, Davis SW, Toga AW, Thompson PM (2005). Inverse Consistent Mapping in 3D Deformable Image Registration: Its Construction and Statistical Properties, Information Processing in Medical Imaging (IPMI) 2005, Glenwood Springs, Colorado, July 11-15, 2005. [.pdf, 1.4MB]

  225. Fillard P, Pennec X, Thompson PM, Ayache N (2005). Extrapolation of Sparse Tensor Fields: Application to the Modeling of Brain Variability, Information Processing in Medical Imaging (IPMI) 2005, Glenwood Springs, Colorado, July 11-15, 2005. [.pdf, 0.7MB]

  226. Joshi A, Shattuck DW, Thompson PM, Leahy RM (2005). A Framework for Registration, Statistical Characterization and Classification of Cortically Constrained Functional Data, Information Processing in Medical Imaging (IPMI) 2005, Glenwood Springs, Colorado, July 11-15, 2005.

  227. Wang YL, Chiang MC, Thompson PM (2005). Automated Surface Matching using Mutual Information Applied to Riemann Surface Structures, Medical Image Computing and Computer Assisted Interventions (MICCAI) 2005, Palm Springs, CA, Oct. 26-29, 2005, Part II, pp. 666-674 [only 37.8% of papers accepted].

  228. Wang YL, Gu X, Chan T, Hayashi KM, Thompson PM, Yau ST (2005). Brain Surface Conformal Parameterization using Riemann Surface Structure, Medical Image Computing and Computer Assisted Interventions (MICCAI) 2005, Palm Springs, CA, Oct. 26-29, 2005, Part II, pp. 657-665 [only 37.8% of papers accepted]. [.pdf, 8.2MB]

  229. Wang YL, Lui LM, Chan TF, Thompson PM (2005). Optimization of Brain Conformal Mapping using Landmarks, Medical Image Computing and Computer Assisted Interventions (MICCAI) 2005, Palm Springs, CA, Oct. 26-29, 2005, Part II, pp. 675-683 [only 37.8% of papers accepted].

  230. Wang YL, Chiang MC, Thompson PM (2005). Mutual Information-based 3D Surface Matching with Applications to Face Recognition and Brain Mapping, International Conference on Computer Vision 2005, Beijing, China, Oct. 2005, pp. 527-534 [only 20% of papers accepted].

  231. Wang YL, Gu X, Chan T, Hayashi KM, Thompson PM, Yau ST (2005). Surface Parameterization using Riemann Surface Structure, International Conference on Computer Vision 2005, Beijing, China, Oct. 2005, pp. 1061-1066 [only 20% of papers accepted].

  232. Wang YL, Chiang MC, Thompson PM (2005). 3D Surface Matching with Mutual Information and Riemann Surface Structures, 8th IASTED International Conference on Computer Graphics and Imaging (CGIM), Honolulu, HI, USA, Aug. 14-17 2005, pp. 94-99. [.pdf, 592KB]

  233. Wang YL, Lui LM, Chan TF, Thompson PM (2005). Combination of Brain Conformal Mapping and Landmarks, 8th IASTED International Conference on Computer Graphics and Imaging (CGIM), Honolulu, HI, USA, Aug. 14-17 2005, pp. 70-75. [.pdf, 308KB]

  234. Wang YL, Gu X, Chan T, Hayashi KM, Thompson PM, Yau ST (2005). Brain Surface Conformal Parameterization, 8th IASTED International Conference on Computer Graphics and Imaging (CGIM), Honolulu, HI, USA, Aug. 14-17 2005, pp. 76-81. [.pdf, 468KB]

  235. Carmichael OT, Thompson PM, Dutton RA, Lu A, Lee SH, Lee JY, Kuller LH, Lopez OL, Aizenstein HA, Meltzer CC, Liu Y, Toga AW, Becker JT (2006). Mapping Ventricular Changes Related to Dementia and Mild Cognitive Impairment in a Large Community-Based Cohort, IEEE International Symposium on Biomedical Imaging (ISBI2006), April 6-9 2006. [.pdf, 3.3MB]

  236. Tosun D, Reiss AL, Lee AD, Dutton RA, Geaga JA, Hayashi KM, Eckert MA, Bellugi U, Galaburda AM, Korenberg JR, Mills DL, Toga AW, Thompson PM (2006). Use of 3-D Cortical Morphometry for Mapping Increased Cortical Gyrification and Complexity in Williams Syndrome, IEEE International Symposium on Biomedical Imaging (ISBI2006), April 6-9 2006. [.pdf, 344KB]

  237. Chiang MC, Dutton RA, Hayashi KM, Toga AW, Lopez OL, Aizenstein HJ, Becker JT, Thompson PM (2006). Fluid Registration of Medical Images using Jensen-Renyi Divergence Reveals 3D Profile of Brain Atrophy in HIV/AIDS, IEEE International Symposium on Biomedical Imaging (ISBI2006), April 6-9 2006. [.pdf, 2.5MB]

  238. Lui LM, Wang Y, Chan TF, Thompson PM (2006). Automatic Landmark Tracking Applied to Optimize Brain Conformal Mapping, IEEE International Symposium on Biomedical Imaging (ISBI2006), April 6-9 2006.[.pdf, 2.5MB]

  239. Lepore N, Leow AD, Thompson PM (2006). Landmark Matching on the Sphere Using Distance Functions, IEEE International Symposium on Biomedical Imaging (ISBI2006), April 6-9 2006.

    MICCAI 2006 Conference Papers:

  240. Lepore N, Brun CA, Chiang MC, Chou YY, Dutton RA, Hayashi KM, Becker JT, Aizenstein HJ, Lopez OL, Toga AW, Thompson PM (2006). Multivariate Statistics of the Jacobian Matrices in Tensor-Based Morphometry and their Application to HIV/AIDS, 9th Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI2006), Oct. 1-6 2006, Copenhagen, Denmark; LNCS 4190, pp. 191-198. [.pdf, 700KB]

  241. Leow AD, Chiang MC, Becker JT, Davis SW, Toga AW, Thompson PM (2006). Realizing Unbiased Deformation: A Theoretical Consideration, 9th Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI2006) Workshop on Foundations in Computational Anatomy [ed. Pennec X, Joshi S], Oct. 1-6 2006, Copenhagen, Denmark.

  242. Lui LM, Wang YL, Chan TF, Thompson PM (2006). A Landmark-Based Brain Conformal Parameterization with an Automatic Landmark Tracking Technique, 9th Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI2006), Oct. 1-6 2006, Copenhagen, Denmark.

  243. Zheng S, Tu Z, Yuille AL, Reiss AL, Dutton RA, Lee AD, Galaburda A, Thompson PM, Dinov ID, Toga AW (2006). A Learning-Based Algorithm for Automatic Extraction of the Cortical Sulci, 9th Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI2006), Oct. 1-6 2006, Copenhagen, Denmark; LNCS 4190, pp. 695-703. [.pdf, 804KB]

  244. Wang YL, Gu XF, Chan TF, Thompson PM, Yau ST (2006). Brain Surface Conformal Parameterization with Algebraic Functions, 9th Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI2006), Oct. 1-6 2006, Copenhagen, Denmark. [.pdf, 803KB]

  245. Lui LM, Wang YL, Chan TF, Thompson PM (2006). Automatic Landmark Tracking and Its Application to the Optimization of Brain Conformal Mapping, IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR), New York, NY, June 2006. [.pdf, 858KB]

    ISBI 2007 and CVPR 2007 Conference Papers:

  246. Chou YY, Lepore N, de Zubicaray GI, Rose SE, Carmichael OT, Becker JT, Toga AW, Thompson PM (2007). Automatic 3D Mapping and Analysis of the Lateral Ventricles using Fluid Registration of Multiple Labeled Atlases, ISBI 2007. [.pdf, 252KB]

  247. Gutman B, Wang YL, Lui LM, Chan TF, Thompson PM (2007). Hippocampal Surface Discrimination via Invariant Descriptors of Spherical Conformal Maps, ISBI 2007. [.pdf, 368KB]

  248. Joshi AA, Shattuck DW, Thompson PM, Leahy RM (2007). A Finite Element Method for Elastic Parameterization and Alignment of Cortical Surfaces using Sulcal Constraints, ISBI 2007. [.pdf, 404KB]

  249. Shi Y, Reiss AL, Lee AD, Dutton RA, Bellugi U, Galaburda AM, Korenberg JR, Mills DL, Dinov ID, Thompson PM, Toga AW (2007). Hamilton-Jacobi Skeletons on Cortical Surfaces with Applications in Characterizing the Gyrification Pattern in Williams Syndrome, ISBI 2007.

  250. Yanovsky I, Chiang MC, Thompson PM, Klunder AD, Becker JT, Davis SW, Toga AW, Leow AD (2007). Quantifying Deformation Using Information Theory, ISBI 2007. [.pdf, 672KB]

  251. Wang YL, Gu X, Chan TF, Thompson PM, Yau ST (2007). Brain Surface Conformal Parameterization with the Ricci Flow, ISBI 2007. [.pdf, 400KB]

  252. Yanovsky I, Thompson PM, Osher S, Leow AD (2007). Topology Preserving Log-Unbiased Nonlinear Image Registration: Theory and Implementation, IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR), 2007.

    IPMI 2007, SPIE 2007, MICCAI 2007, FBIT 2007 Conference Papers:

  253. Chiang MC, Klunder AD, McMahon K, de Zubicaray GI, Wright M, Toga AW, Thompson PM (2007). Information-Theoretic Analysis of Brain White Matter Fiber Orientation Distribution Functions, Information Processing in Medical Imaging 2007. [.pdf, 1.2MB]

  254. Alcantara DA, Carmichael OT, Delson E, Harcourt-Smith W, Sterner, Frost S, Dutton RA, Thompson PM, Aizenstein H, Lopez OL, Becker JT, Amenta N (2007). Localized Components Analysis, Information Processing in Medical Imaging 2007.

  255. Shi Y, Tu Z, Reiss AL, Dutton RA, Lee AD, Galaburda A, Dinov ID, Thompson PM, Toga AW (2007). Joint Sulci Detection Via Belief Propagation, Information Processing in Medical Imaging 2007.

  256. Joshi AA, Shattuck DW, Thompson PM, Leahy RM (2007). Combining Surface and Volume Registration using Harmonic Maps, Information Processing in Medical Imaging 2007.

  257. Joshi AA, Shattuck DW, Thompson PM, Leahy RM (2007). Simultaneous Surface and Volume Registration by Harmonic Mappings, Proc. SPIE 2007 Medical Imaging Conference, San Diego, CA, USA, Feb. 17-22 2007.

  258. Joshi AA, Shattuck DW, Thompson PM, Leahy RM (2007). Registration of Cortical Surfaces using Sulcal Landmarks for Group Analysis of MEG Data, International Congress Series - Proc. Biomag 2006.

  259. Lepore N, Brun CA, Pennec X, Chou YY, Lopez OL, Aizenstein HJ, Becker JT, Toga AW, Thompson PM (2007). Mean Template for Tensor-Based Morphometry using Deformation Tensors, MICCAI 2007. [.pdf, 120KB]

  260. Brun CA, Lepore N, Pennec X, Chou YY, Lopez OL, Aizenstein HJ, Becker JT, Toga AW, Thompson PM (2007). Comparison of Standard and Riemannian Elasticity for Tensor-Based Morphometry in HIV/AIDS, MICCAI 2007, Proc. MICCAI Workshop on Image Registration, 2007. [.pdf, 4.3MB].

  261. Mani M, Chou YY, Lepore N, Klunder AD, de Leeuw J, McMahon K, de Zubicaray GI, Martin N, Wright M, Toga AW, Thompson PM (2007). Mapping Genetic Influences on Brain Shape using Multi-Atlas Fluid Image Alignment, FBIT 2007.

  262. Lee AD, Lepore N, Lepore F, Alary F, Voss P, Toga AW, Thompson PM (2007). Brain Differences Visualized in the Blind using Tensor Manifold Statistics and Diffusion Tensor Imaging, FBIT 2007. [.pdf, 1.0MB]

  263. Lepore N, Chou YY, Lopez OL, Aizenstein HJ, Becker JT, Toga AW, Thompson PM (2008). Fast 3D Fluid Registration of Brain Magnetic Resonance Images, Proc. SPIE 2008.

    ISBI 2008 Conference Papers:

  264. Aganj I, Sapiro G, Parikshak N, Madsen SK, Thompson PM (2008), Segmentation-Free Measurement of Cortical Thickness from MRI, ISBI 2008, Paris, France, May 2008. [.pdf, 315KB]

  265. Morra J, Tu Z, Apostolova LG, Green AE, Avedissian C, Madsen SK, Parikshak N, Hua X, Toga AW, Jack CR, Schuff N, Weiner MW, Thompson PM (2008). Automated 3D Mapping of Hippocampal Atrophy and its Clinical Correlates in 400 Subjects with Alzheimer's Disease, Mild Cognitive Impairment, and Elderly Controls, ISBI 2008, Paris, France, May 2008. [.pdf, 994KB]

  266. Haro G, Lenglet C, Sapiro G, Thompson PM (2008). On the Non-Uniform Complexity of Brain Connectivity, ISBI 2008, Paris, France, May 2008. [.pdf, 1.7MB]

  267. Yanovsky I, Thompson PM, Osher SJ, Hua X, Shattuck DW, Toga AW, Leow AD (2008). Validating Unbiased Registration on Longitudinal MRI Scans from the Alzheimer's Disease Neuroimaging Initiative (ADNI), ISBI 2008, Paris, France, May 2008. [.pdf, 1.2MB]

  268. Chiang MC, Barysheva M, Lee AD, Madsen SK, Klunder AD, Toga AW, McMahon KL, de Zubicaray GI, Meredith M, Wright MJ, Srivastava A, Balov N, Thompson PM (2008). Mapping Genetic Influences on Brain Fiber Architecture with High Angular Resolution Diffusion Imaging (HARDI), ISBI 2008, Paris, France, May 2008. [.pdf, 1.2MB]

  269. Chou YY, Lepore N, Barysheva M, Chiang MC, McMahon KL, de Zubicaray GI, Meredith M, Wright MJ, Toga AW, Thompson PM (2008). Quantitative Genetic Modeling of Lateral Ventricular Shape and Volume using Multi-Atlas Fluid Image Alignment in Twins, ISBI 2008, Paris, France, May 2008. [.pdf, 950KB]

  270. Lee AD, Lepore N, Barysheva M, Chou YY, Brun CA, Madsen SK, McMahon KL, de Zubicaray GI, Meredith M, Wright MJ, Toga AW, Thompson PM (2008). Comparison of Fractional and Geodesic Anisotropy in Diffusion Tensor Images of 90 Monozygotic and Dizygotic Twins, ISBI 2008, Paris, France, May 2008. [.pdf, 1.8MB]

  271. Brun CA, Lepore N, Pennec X, Chou YY, Lee AD, McMahon KL, de Zubicaray GI, Meredith M, Wright MJ, Barysheva M, Toga AW, Thompson PM (2008). A New Registration Method Based on Log-Euclidean Tensor Metrics and its Application to Genetic Studies, ISBI 2008, Paris, France, May 2008. [.pdf, 162KB]

  272. Lin T, Lee EF, Dinov ID, Le Guyader C, Thompson PM, Vese L (2008). A Landmark-Based Nonlinear Elasticity Model for Mouse Atlas Registration, ISBI 2008, Paris, France, May 2008.

  273. Wang YL, Gu X, Chan TF, Thompson PM, Yau ST (2008). Brain Surface Conformal Parameterization with the Slit Map, ISBI 2008, Paris, France, May 2008.

  274. Lepore N, Brun C, Chou YY, Lee AD, Barysheva M, Pennec X, McMahon KL, Meredith M, de Zubicaray GI, Wright MJ, Toga AW, Thompson PM (2008). Best Individual Template Selection from Deformation Tensor Minimization, ISBI 2008, Paris, France, May 2008. [.pdf, 444KB]

  275. Leow AD, Zhu S, de Zubicaray GI, Meredith M, Wright M, Thompson PM (2008). The Tensor Distribution Function, ISBI 2008, Paris, France, May 2008. [.pdf, 246KB]

    Book Chapters

  276. Thompson PM, Sowell ER, Gogtay N, Giedd JN, Vidal CN, Hayashi KM, Leow A, Nicolson R, Rapoport JL, Toga AW (2005). Structural MRI and Brain Development, in: Glabus M [ed.], International Review of Neurobiology (IRN), 2005. [Full Chapter, .pdf, 6MB]

  277. Toga, A.W., Thompson, P.M. and Payne, B.A., (1996d). Modeling Morphometric Changes of the Brain during Development, in: Developmental Neuroimaging: Mapping the Development of Brain and Behavior, R.W. Thatcher, G. Reid Lyon, J. Rumsey, N. Krasnegor, [eds.], Academic Press, pp.15-27, September 1996.

  278. Thompson, P.M., Toga, A.W. (1998). Anatomically-Driven Strategies for High-Dimensional Brain Image Warping and Pathology Detection, Book Chapter in: Toga A.W. [ed.], Brain Warping, Academic Press, pp.311-336, November 1998 [Excerpt from the Chapter (.html, 73 KB)]

  279. Thompson, P.M., Narr, K.L., Blanton, R.E., Toga, A.W. (2003). Mapping Structural Alterations of the Corpus Callosum during Brain Development and Degeneration, Book Chapter in: Marco Iacoboni, Eran Zaidel [eds.], The Parallel Brain, MIT Press, Cambridge. [Full Chapter (.html, 191 KB)]

  280. Toga, A.W., Thompson, P.M. (1998). An Introduction to Brain Warping, Book Chapter in: Toga A.W. [ed.], Brain Warping, Academic Press, pp.1-26, November 1998. [Excerpt from the Chapter: (Without Figures; .pdf 159K) ]

  281. Toga, A.W., Thompson, P.M. (1999). Multimodal Brain Atlases, Book Chapter in: Advances in Biomedical Image Databases, S. Wong [ed.], Kluwer Academic Press [in press]. [Excerpt from the Chapter (.html, 84 KB)]

  282. Toga, A.W., Thompson, P.M. (2000). An Introduction to Maps and Atlases of the Brain, Book Chapter in: Brain Mapping: The Systems, Toga, A.W., Mazziotta, J.C. [eds.], Academic Press [in press].

  283. Toga, A.W., Thompson, P.M. (2000). Brain Atlases and Registration, Book Chapter in: Handbook of Medical Image Processing, Isaac Bankman [ed.], Academic Press [in press]. [Excerpt from the Chapter: (Without Figures; .pdf 130K) ]

  284. Thompson, P.M., Toga, A.W. (2000). Elastic Image Registration and Pathology Detection, Book Chapter in: Handbook of Medical Image Processing, Isaac Bankman [ed.], Academic Press [in press]. [Excerpt from the Chapter: (Without Figures; .pdf 225K) ]

  285. Thompson, P.M., Mega, M.S., Toga, A.W. (2000). Disease-Specific Brain Atlases, Book Chapter in: Brain Mapping: The Disorders, Toga, A.W., Mazziotta, J.C., Frackowiak, R.S.J. [eds.], Academic Press [in press]. [Excerpt from the Chapter: (Without Figures; .pdf 625K) ]

  286. Thompson, P.M., Mega, M.S., Narr, K.L., Sowell, E.R., Blanton, R.E., Toga, A.W. (2000). Brain Image Analysis and Atlas Construction, Tutorial Book Chapter in: SPIE Handbook of Medical Image Processing and Analysis, Fitzpatrick, M., Sonka, M. [eds.], SPIE Press [in press]. [Excerpt from the Chapter: (Without Figures; .pdf 388K; 42 pages) (With Color Figures - 70 pages:) [pages 1-5] [pages 6-10] [pages 11-20] [pages 21-30] [pages 31-33] [pages 34-36] [page 37] [page 38] [page 39] [pages 41-50] [pages 51-60] [pages 61-70] [NEW]

  287. Thompson, P.M., Mega, M.S., Toga, A.W. (2002). Subpopulation Brain Atlases, Tutorial Book Chapter in: Brain Mapping: The Methods [2nd revised edn.], Toga, A.W., Mazziotta, J.C. [eds.], Academic Press. [Excerpt from the Chapter: Without Figures; .pdf 190K; 37 pages] [NEW]

  288. Thompson, P.M., Rapoport, J.L., Cannon, T.D., Toga, A.W. (2003). Automated Analysis of Structural MRI Data, Tutorial Book Chapter (Chapter 5) in: Brain Imaging in Schizophrenia, Stephen Lawrie, Eve C. Johnstone, Daniel Weinberger [eds.], Oxford University Press, 2003. [Without Figures; .pdf 251K; 36 pages] [NEW]

  289. Toga, A.W., Mega, M.S., Thompson, P.M. (2002). Neuroimaging Alzheimer's Disease , Book Chapter in: Esiri, M., Morris, J.H., The Neuropathology of Dementia, Cambridge University Press [in press]. [Without Figures: .pdf 498K].

  290. Toga, A.W., Thompson, P.M., Narr, K.L., Sowell, E.R. (2003). Probabilistic Brain Atlases of Normal and Diseased Populations Book chapter in Databasing the Brain: From Data to Knowledge (Neuroinformatics), Koslow, S.H., Subramaniam, S. [eds.], John Wiley & Sons, Inc. [With Figures; .pdf 1227K; 36 pages]

  291. Mega, M.S., Thompson, P.M., Toga, A.W., Cummings, J.L. (1999). Brain Mapping in Dementia, Book Chapter in: Brain Mapping: The Disorders, Toga, A.W., Mazziotta, J.C., Frackowiak, R.S.J. [eds.], Academic Press, pp. 217-239. [With Figures: .pdf 5.8MB; 23 pages].

  292. Pitiot A, Delingette H, Thompson PM (2004). Automated Image Segmentation: Issues and Applications, Book Chapter in: Leondes C [ed.], Medical Image Systems: Technology and Applications, Academic Press, 2004. [.pdf 599KB].

  293. Small GW, Kepe V, Ercoli LM, Siddarth P, Bookheimer SY, Miller KJ, Lavretsky H, Burggren AC, Cole GM, Vinters HV, Thompson PM, Huang SC, Satyamurthy NE, Phelps ME, Barrio JR (2008). Cerebral Amyloid and Tau PET Scanning in Mild Cognitive Impairment, Alzheimer Year Book 2008 - Research and Practice in Alzheimer's Disease and Cognitive Decline, vol 11, 2008.

    Conference Papers

  294. Toga, A.W., Thompson, P.M., Holmes, C.J., Payne, B.A., (1996i). Informatics and Computational Neuroanatomy, Proc. of Annual Symposium of the American Medical Informatics Association, Section S75 - Brain Mapping and Image Databases, Washington, DC, USA, October 26-30, 1996, pp.299-303.

  295. Thompson, P.M., Toga, A.W., (1997i(i)). Measuring, Mapping, and Modeling Brain Structure and Function, First Prize (Best Paper & Presentation), SPIE Medical Imaging Symposium, February 1997, Newport Beach, CA, USA. Also (same conference): Toga, A.W., Thompson, P.M., (1997i(ii)). Measuring, Mapping, and Modeling Brain Structure and Function (Keynote Address), Proc. of the Annual SPIE Medical Imaging Symposium, Newport Beach, CA, USA, February 1997, volume 3033.

  296. Toga, A.W., Thompson, P.M., (1997). Variabilities and Probabilities of Human Brain Anatomy, In: Neuroinformatics: A New Capability for Neuroscience in the Next Millennium, 17th Winter Conference on Brain Research, S11.

  297. Thompson, P.M., Toga, A.W. (1998). Mathematical/Computational Strategies for Creating a Probabilistic Atlas of the Human Brain, Workshop on Statistics of Brain Mapping, Centre de Recherches Mathematiques, McGill University, Montreal, Canada, June 13-14 1998.

  298. Thompson, P.M., Toga, A.W. (1998). Mathematical/Computational Challenges in Creating Deformable and Probabilistic Brain Atlases, Invited Presentation, International BrainMap Conference 1998, San Antonio, TX, December 6-7 1998.

  299. Holmes, C.J., Thompson, P.M., Toga, A.W. (1999). Applications of Graphics Technology in Medical Imaging, Silicon Graphics World 9(9):9-11, Mountain View, CA, Sept. 1999. [Full article: (With Figures; .pdf 7278K; 3 pages) ]

  300. Pitiot, A., Toga, A.W., Ayache, N., Thompson, P.M. (2002). Texture-Based MRI Segmentation with a Two-Stage Hybrid Neural Classifier, IEEE 2002 World Congress on Computational Intelligence and Neural Nets, Honolulu, HI, May 12-17, 2002. (With Figures; .pdf 261KB; 6 pages).

    Abstracts

  301. Thompson, P.M. and Toga, A.W., (1996e). Mapping the Internal Cortex: A Probabilistic Brain Atlas Based on High-Dimensional Random Fluid Transformations, 2nd International Conference on Functional Mapping of the Human Brain, June 17-21 1996, Boston, MA; NeuroImage 3(3):125, June 1996.

  302. Thompson, P.M., Schwartz, C., Lin, R.T., Khan, A.A., Toga, A.W. and Collins, R.C., (1995). 3D Statistical Analysis of Sulcal Variability in the Human Brain using High-Resolution Cryosection Images, Proc. of the Society for Neuroscience, San Diego, CA, USA, 21(1):154.

  303. Thompson, P.M., Mega, M.S., Moussai, J., Zohoori, S., Xu, L.Q., Goldkorn, A., Khan, A.A., Coryell, J., Small, G., Cummings, J. and Toga, A.W., (1996g). 3D Probabilistic Atlas and Average Surface Representation of the Alzheimer's Brain, with Local Variability and Probability Maps of Ventricles and Deep Cortex, Proc. of the Society for Neuroscience, Washington, DC, USA, 26(2):1105, (438.2), November 1996.

  304. Mega, M.S., Chen, S., Tiwari, A., Karaca, T.J., Thompson, L., Vinters, H., Thompson, P.M. and Toga, A.W., (1996h). Mapping Pathology to Metabolism: Coregistration of Stained Whole Brain Sections to PET, Proc. of the Society for Neuroscience, Washington, DC, USA, 26(2):1105, (438.1), November 1996.

  305. Mega, M.S., Chu, T., Thompson, P.M., Mazziotta, J.C., Cole, G., Toga, A.W., (1997c). Amyloid Beta Protein Density and Cortical Metabolism on FDG-PET in Alzheimer's Disease, 3rd International Conference on Functional Mapping of the Human Brain, May 19-23, 1997, Copenhagen, Denmark, NeuroImage 5(4):S346.

  306. Burt, J., Mega, M.S., Thompson, P.M., Aron, J., Ghasri, P., Cole, G., Toga, A.W., (1997d). Cortical Synaptophysin Density and Pre-Mortem Metabolism on FDG-PET in Alzheimer's Disease, [submitted].

  307. Thompson, P.M., MacDonald, D., Mega, M.S., Holmes, C.J., Evans, A.C., Toga, A.W., (1997f). Quantifying and Correcting for Variable Cortical Morphology in Functional Imaging using a Deformable Probabilistic Brain Atlas, Proceedings of the 3rd International Conference on Functional Mapping of the Human Brain, Copenhagen, Denmark (May 19-23, 1997), NeuroImage 5(4), May 1997.

  308. Holmes, C.J., Payne, B.A., Thompson, P.M., MacDonald, D., Evans, A.C., Toga, A.W., (1997g). Extruded Parametric Tetrahedral Models for Automatic Subnuclear Surface Extraction, 3rd Int. Conf. on Functional Mapping of the Human Brain, May 19-23 1997, Copenhagen, Denmark.

  309. Blanton, R.E., Thompson, P.M., Cannestra, A.F., Mega, M.S., Sharma, T., Levitt, J.L., McCracken, J.T., Toga, A.W., (1997h). The Relevance of Talairach Stereotaxic Space: A Developmental Study, Soc. Neurosci. Abstracts 27(2).

  310. Dinov, I.D., Thompson, P.M., Woods, R.P., Mega, M.S., Holmes, C.J., Sumners, D.W., Toga, A.W. (1998). On the Permissibility of Covariogram Models with Applications to Analyzing Human Brain Functional Data, Conference on Statistical Analysis in Alzheimer's Disease Research, May 15-17 1998, Lexington, KY.

  311. Thompson, P.M., Mega, M.S., Blanton, R.E., Moussai, J., Khan, A.A., Zohoori, S., Mogy, J., Aron, J., Goldkorn, A., Holmes, C.J., Small, G.W., Cummings, J.L., MacDonald, D., Evans, A.C., Collins, R.C., Toga, A.W. (1997j). A Detection System for Mapping Abnormal Structure, Anatomic Variability, and Brain Asymmetry in Alzheimer's Disease and Aging, with 3D Deformable Probabilistic Brain Atlases, Proc. Annual Symposium of the Society for Neuroscience, New Orleans, Louisiana, USA, 27(2):2173, October 1997.

  312. Mega, M.S., Chu, T., Thompson, P.M., Mazziotta, J., Burt, J., Aron, J., Ghasri, P., Chen, S., Lim, J., Cole, G.M., Toga, A.W. (1997k). [18F]-Fluorodeoxyglucose Positron Emission Tomography (FDG-PET) Corrected with Synaptophysin Density is Inversely Related to Beta-Amyloid Burden in Alzheimer's Disease, Proc.122nd Annual Meeting of the American Neurological Association, San Diego, California, September 1997.

  313. Fuh, J.L., Mega, M.S., Thompson, P.M., Cummings, J.L., Toga, A.W. (1997l). Cortical Complexity Maps and Cognition in Alzheimer's Disease, Proc. 122nd Annual Meeting of the American Neurological Association, 1997.

  314. Mega, M.S., Dinov, I.D., Lee, L., Woods, R.P., Thompson, P.M., Holmes, C.J., Back, C.L., Collins, D.L., Evans, A.C., Toga, A.W. (1998a). Dissecting Neural Networks Underlying the Retrieval Deficit from the Amnestic Memory Disorder Using [99mTc]-HMPAO-SPECT (Single Photon Emission Computed Tomography), Annual Conference of the American Neuropsychiatric Association (ANPA), Feb. 1-3 1998, Honolulu, Hawaii, Feb. 1998.

  315. Thompson, P.M., Mega, M.S., Blanton, R.E., Moussai, J., Khan, A.A., Zohoori, S., Goldkorn, A., Holmes, C.J., MacDonald, D., Small, G.W., Cummings, J.L., Toga, A.W. (1998). 3-Dimensional Patterns of Abnormal Brain Structure, Anatomic Variation & Asymmetry in Alzheimer's Disease, Annual Conference of the American Neuropsychiatric Association (ANPA), Feb. 1-3 1998, Honolulu, Hawaii, Feb. 1998.

  316. Thompson, P.M., Giedd, J.N., Blanton, R.E., Lindshield, C., Woods, R.P., MacDonald, D., Evans, A.C., Toga, A.W. (1998). Growth Patterns in the Developing Human Brain Detected Using Continuum-Mechanical Tensor Maps and Serial MRI, 4th International Conference on Functional Mapping of the Human Brain, June 7-12, 1998, Montreal, Canada.

  317. Sowell, E.R., Holmes, C.J., Thompson, P.M., Batth, R., Toga, A.W. (1998). Localizing Age-Related Changes in Brain Structure between Childhood and Adolescence using Statistical Mapping Techniques, 4th International Conference on Functional Mapping of the Human Brain, June 7-12, 1998, Montreal, Canada.

  318. Narr, K.L., Cannestra, A.F., Thompson, P.M., Sharma, T., Toga, A.W. (1998). Morphological Variability Maps of the Corpus Callosum and Fornix in Schizophrenia, 4th International Conference on Functional Mapping of the Human Brain, June 7-12, 1998, Montreal, Canada.

  319. Moussai, J., Anvar, B.A., Narr, K.L., Cannestra, A.F., Thompson, P.M., Sharma, T., Toga, A.W. (1998). 3-Dimensional Analysis of Lateral Ventricles in Schizophrenia, 4th International Conference on Functional Mapping of the Human Brain, June 7-12, 1998, Montreal, Canada.

  320. Mega, M.S., Aron, J., Thompson, P.M., Lee, L., Mogy, J., Toga, A.W. (1998). Cortical Surface Variability of the Alzheimer's Brain: Correlates with Cognition, 4th International Conference on Functional Mapping of the Human Brain, June 7-12, 1998, Montreal, Canada.

  321. Mega, M.S., Trivedi, K.H., Mazziotta, J.C., Woods, R.P., Thompson, P.M., Lim, J., Shah, A.K., Lindshield, C.J., Sterling, L., Yu, J., Zoumalan, C.I., Toga, A.W. (1998). A Population-Based Multi-Modality Atlas of the Alzheimer's Brain: Integrating Pathology and Metabolism, 4th International Conference on Functional Mapping of the Human Brain, June 7-12, 1998, Montreal, Canada.

  322. Woods, R.P., Mega, M.S., Thompson, P.M. (1998). Use of Automated Polynomial Warping to Create an MRI Atlas Specific for the Study of Alzheimer's Disease, Annals of Neurology 44(3):449.

  323. Sowell, E.R., Thompson, P.M., Holmes, C.J., Jernigan, T.L., Toga, A.W. (1998). Statistical Parametric Mapping of Structural Brain Changes between Childhood and Adolescence, Annual Conference of the Society for Neuroscience, 1998.

  324. Narr, K.L., Sharma, T., Edris, A., Cannestra, A.F., Thompson, P.M., Toga, A.W. (1998). 3-Dimensional Analysis of Sylvian Fissure Morphometry in Schizophrenia, Annual Conference of the Society for Neuroscience, 1998.

  325. Blanton, R.E., Levitt, J.G., Thompson, P.M., Sowell, E.R., Narr, K.L., Mega, M.S., Sharma, T., Collins, R.C., Toga, A.W. (1998). Normal Developmental and Aging Effects on Corpus Callosum Morphology, Annual Conference of the Society for Neuroscience, 1998.

  326. Dinov, I.D., Thompson, P.M., Woods, R.P., Mega, M.S., Holmes, C.J., Sumners, D., Toga, A.W. (1998). On Permissibility of Covariogram Models with Applications to Analyzing Human Brain Functional Data, Conference on Statistical Analysis in Alzheimer's Disease Research, May 15-17 1998, Lexington, KY.

  327. Thompson, P.M., Mega, M.S., Woods, R.P., Blanton, R.E., Moussai, J., Zoumalan, C.I., Dinov, I.D., Cummings, J., MacDonald, D., Evans, A.C., Toga, A.W. (1999). Detecting 3D Patterns of Alzheimer's Disease Pathology with a Probabilistic Brain Atlas based on Continuum Mechanics, Annual Conference of the American Academy of Neurology, 1999.

  328. Mega, M.S., Woods, R.P., Thompson, P.M., Dinov, I.D., Lee, L., Aron, J., Zoumalan, C.I., Cummings, J.L., Toga, A.W. (1998). Detecting Metabolic Patterns Associated with Minimal Cognitive Impairment using FDG-PET Analysis within a Probabilistic Brain Atlas based upon Continuum Mechanics, Annual Conference of the Society for Neuroscience, 1998.

  329. Zoumalan, C.I., Mega, M.S., Thompson, P.M., Fuh, J.L., Lindshield, C., Toga, A.W. (1999). Mapping 3D Patterns of Cortical Variability in Normal Aging and Alzheimer's Disease, Annual Conference of the American Academy of Neurology, 1999.

    1999:

  330. Thompson, P.M., Giedd, J.N., Woods, R.P., MacDonald, D., Evans, A.C., Toga, A.W. (1999). Dynamic Growth and Pruning Patterns in the Developing Human Brain Identified Using Continuum-Mechanical Tensor Mapping, 5th International Conference on Functional Mapping of the Human Brain, Dusseldorf, Germany, June 1999.

  331. Thompson, P.M., Mega, M.S., Woods, R.P., Blanton, R.E., Moussai, J., Zoumalan, C.I., Aron, J., Cummings, J.L., Toga, A.W. (1999). A Probabilistic Atlas of the Human Brain in Alzheimer's Disease: Emerging Patterns of Variability, Asymmetry and Degeneration, 5th International Conference on Functional Mapping of the Human Brain, Dusseldorf, Germany, June 1999.

  332. Shah, A.K., Mega, M.S., Trivedi, K.H., Lindshield, C.J., Duhaylongsod, L.M., Dooley, J.R., Thompson, P.M., Sterling, L., Yu, J., Leung, M., Saedi, G., Zoumalan, C.I., Nguyen, A., Toga, A.W. (1999). A Population-Based Digital Atlas of the Alzheimer's Brain: Integrating Functional, Histological and Biochemical Data, 5th International Conference on Functional Mapping of the Human Brain, Dusseldorf, Germany, June 1999.

  333. Zoumalan, C.I., Mega, M.S., Thompson, P.M., Grigorians, A., Nguyen, A., Toga, A.W. (1999). Three-Dimensional Sulcal Deformations of the Brain in Aging and Dementia are Related to Cognitive Performance, 5th International Conference on Functional Mapping of the Human Brain, Dusseldorf, Germany, June 1999.

  334. Mega, M.S., Dinov, I.D., Lindshield, C., Thompson, P.M., Toga, A.W. (1999). Differences between Raw and Partial Volume Corrected Analysis of Positron Emission Tomography (PET) Data using Sub-Volume Thresholding in a Probabilistic Region-of-Interest Atlas, 5th International Conference on Functional Mapping of the Human Brain, Dusseldorf, Germany, June 1999.

  335. Dinov, I.D., Woods, R.P., Thompson, P.M., Sumners, D.L., Mega, M.S., Sowell, E.R., Toga, A.W. (1999). Quantitative Comparison and Analysis of Stereotactic Image Registration: Wavelet-Based Frequency Adaptive Warp Ranking, Presentation #141, 5th International Conference on Functional Mapping of the Human Brain, Dusseldorf, Germany, June 1999.

  336. Blanton, R.E., Levitt, J., Thompson, P.M., Badrtalei, S., Capetillo-Cunliffe, L., Toga, A.W. (1999). Average 3-Dimensional Caudate Surface Representations in a Juvenile-Onset Schizophrenia and Normal Pediatric Population, Presentation #621, 5th International Conference on Functional Mapping of the Human Brain, Dusseldorf, Germany, June 1999.

  337. Narr, K.L., Sharma, T., Moussai, J., Zoumalan, C.I., Cannestra, A.F., Thompson, P.M., Toga, A.W. (1999). 3D Maps of Cortical Surface Variability and Sulcal Asymmetries in Schizophrenic and Normal Populations, 5th International Conference on Functional Mapping of the Human Brain, Dusseldorf, Germany, June 1999.

  338. Sowell, E.R., Thompson, P.M., Holmes, C.J., Batth, R., Levitt, J., Caplan, R., McCracken, J., Asarnow, R.F., Toga, A.W. (1999). Subcortical and Temporo-Limbic Abnormalities in Early Onset Schizophrenia Observed with Statistical Parametric Mapping of Structural MRI, 5th International Conference on Functional Mapping of the Human Brain, Dusseldorf, Germany, June 1999.

  339. Lindshield, C.J., Mega, M.S., Narr, K.L., Moussai, J., Dinov, I.D., Sowell, E.R., Thompson, P.M., Woods. R.P., Sharma, T., Toga, A.W. (1999). Age-Related Frontal Gray Matter Loss: Volumetric Tissue Analysis in a Probabilistic Atlas using High-Order Non-linear Registration, 5th International Conference on Functional Mapping of the Human Brain, Dusseldorf, Germany, June 1999.

  340. Thompson, P.M., Mega, M.S., Woods, R.P., Blanton, R.E., Moussai, J., Zoumalan, C.I., Cummings, J., MacDonald, D., Evans, A.C., Toga, A.W. (1999). Detecting 3D Patterns of Alzheimer's Disease Pathology with a Disease-Specific, Population-Based Probabilistic Brain Atlas, Proc. Society for Neuroscience, Miami, FL, Oct. 1999.

  341. Sowell, E.R., Thompson, P.M., Holmes, C.J., Kornsand, D., Jernigan, T.L., Toga, A.W. (1999). Progression of Structural Changes in the Human Brain during the First Three Decades of Life: In Vivo Evidence for Post-Adolescent Frontal and Striatal Maturation, Proc. Society for Neuroscience, Miami, FL, Oct. 1999.

  342. Narr, K.L., Thompson, P.M., Sharma, T., Moussai, J., Zoumalan, C.I., Wang, W., Rayman, J., Toga, A.W. (1999). Cortical and Subcortical Asymmetries: Sex Effects in Schizophrenic and Normal Populations, Proc. Society for Neuroscience, Miami, FL, Oct. 1999.

  343. Mega, M.S., Thompson, P.M., Woods, R.P., Dinov, I.D., Zoumalan, C.I., Cummings, J.L., Mazziotta, J.C., Collins, R.C., Toga, A.W. (1999). Functional Imaging Analysis Within an Alzheimer's Disease Atlas: Cortical Variability Maps of Anatomic and PET Registration Errors , Proc. Society for Neuroscience, Miami, FL, Oct. 1999.

  344. Blanton, R.E., Levitt, J.G., Thompson, P.M., Capetillo-Cunliffe, L.F., Sadoun, T., Williams, T., Cummings, J.L., Toga, A.W. (1999). Mapping 3-Dimensional Changes in the