Mouse Meetings - 2005 All Hands Meeting
The mouse BIRN all hands meeting was hosted at UCLA Laboratory of Neuro Imaging May 31-June 1 2005. Mouse BIRN integrates the activities from these five laboratories: (1) The MRI Center in the Biological Imaging Center (BIC) at the California Institute of Technology (CIT)
http://waggle.gg.caltech.edu/hbp/index.html, (2)The Center for In Vivo Microscopy (CIVM) at Duke University http://www.civm.duhs.duke.edu/, (3) The Laboratory of Neuro Imaging (LONI) at the University of California at Los Angeles (UCLA) http://www.loni.ucla.edu/, (4) The National Center for Microscopy and Imaging Research (NCMIR) at the University of California at San Diego (UCSD)
http://www-ncmir.ucsd.edu/, (5) The Informatics Center for Mouse Neurogenetics at UTHSC, Drexel, and BIDMC (Mouse Brain Library and The GeneNetwork) http://www.mbl.org/ http://www.genenetwork.org/
MAY31, 2005 |
||
| 8:30 AM | BREAKFAST |
|
| 9:00 AM | Goals for this meeting, revisit AHM goals | Arthur Toga |
Research Models Progress/Background |
||
| 9:20 AM | Parkinsons (SNCA) | Eliezer Masliah, Diana Price |
| 10:00 AM | Alzheimers (APP) | Joanna Jankowsky |
| 10:20 AM | CIT MRI data acquisition | Russ Jacobs |
| 10:40 AM | Duke MRI data acquisition | Al Johnson |
| 11:00 AM | BREAK |
|
| 11:10 AM | Multiple Sclerosis (EAE) followed by discussion of work plans | Allan Mackenzie-Graham |
Newest Mouse BIRN participants |
||
| 11:50 AM | Drexel's efforts | Yoni Nissanov, Bill Bug |
| 12:20 PM | University of Tennessee 's efforts | Rob Williams |
| 12:50 PM | LUNCH: Get lunch food Working Lunch: Collaboration tools |
|
| 1:00 PM | BIRN CC on Portal. Mediation, and SRB functions | Jeff Grethe, Mark James, Amarnath Gupta, et al. |
|
Keynote speaker |
||
| 2:00 PM | Beyond the Data Deluge: Data management for knowledge discovery | Judith Blake |
Discussions on Data Management Issues |
||
| 3:00 PM | Data management overview: Access, management, expansion | Maryann Martone |
| 3:20 PM | BREAK |
|
| 3:30 PM | Discussion of data management issues | |
| 4:30 PM | Determine Data Federation Action Items | |
| 5:00 PM | BREAK |
|
Mouse BIRN Discussions |
||
| 5:10 PM | Mouse BIRN representation | Maryann Martone |
Revised Mouse BIRN representation in the BIRN working groups |
||
| 5:25 PM | Data sharing | Rob Williams, Mark Ellisman, and Arthur Toga |
May 31 cont'd |
||
| 5:45 PM | Ontology task force: | Maryann Martone, Bill Bug, and Allan Mackenzie-Graham |
| 6:00 PM | Cross-over team: | G. Allan Johnson, Yoni Nissanov, and Jyl Boline |
| 6:15 PM | BREAK |
|
| 7:00 PM |
DINNER: Napa Valley Grille |
|
June 1, 2005 |
||
| 8:30 AM | BREAKFAST |
|
| 9:00 AM | Multimodal interoperable atlases, and ontologies, what does that mean to me? | Maryann Martone |
Atlasing Workshops, when to use and how to register data |
||
| 9:30 AM | Smart Atlas | Maryann Martone |
Atlasing Workshops, when to use and how to register data |
||
| 10:15 AM | Neuroterrain + MBL atlas normalization | Bill Bug |
| 11:00 AM | Pipeline | Jags Rajendiran, Allan MacKenzie-Graham |
| 11:50 AM | LUNCH ON YOUR OWN |
|
| 1:30 PM | SHIVA/BrainSuite2 | Allan Mackenzie-Graham, David Shattuck |
Atlasing Discussion |
||
| 2:00 PM | Atlas Interoperability | Maryann Martone, Ilya Zalavsky |
| 2:30 PM | Determine Atlasing Action Items | |
Tools update and workshops |
||
| 3:00 PM | Electronic Notebook | Edriss Merchant |
Review of Action Items and Timelines |
||
| 3:40 PM |
EAE Data Federation Atlas Interoperabililty |
Allan Mackenzie-Graham Maryann Martone Ilya Zalavsky |
| 4:00 PM | Tour of new LONI facilities | Arthur Toga |
