CCB.CcbBiologicalProjects (r1.1 vs. r1.24)
Diffs

 <<O>>  Difference Topic CcbBiologicalProjects (r1.24 - 09 May 2006 - MatthewLee)

META TOPICPARENT WebHome

CCB Biological Projects

Line: 11 to 11

Name Description Literature Details Data
Skull-stripping automatic removal of extra-cerebral tissue      
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<		 |Global Segmentaiton | Accurate and automated WM/GM/CSF Brain Segmentation | http://www.loni.ucla.edu/twiki/pub/CCB/CcbBiologicalProjects/REX_BEMA.pdf
http://www.loni.ucla.edu/twiki/pub/CCB/CcbBiologicalProjects/Rottenberg_Seg_Comparison.pdf
http://www.loni.ucla.edu/twiki/pub/CCB/CcbBiologicalProjects/Shattuck01.pdf
http://www.pascal-network.org/Workshops/IOR04/Programme/
Online Lecture Notes on Digital Image Analysis and Understanding
>
>
Global Segmentaiton Accurate and automated WM/GM/CSF Brain Segmentation      
http://www.loni.ucla.edu/twiki/pub/CCB/CcbBiologicalProjects/REX_BEMA.pdf
http://www.loni.ucla.edu/twiki/pub/CCB/CcbBiologicalProjects/Rottenberg_Seg_Comparison.pdf
http://www.loni.ucla.edu/twiki/pub/CCB/CcbBiologicalProjects/Shattuck01.pdf
http://www.pascal-network.org/Workshops/IOR04/Programme/
Online Lecture Notes on Digital Image Analysis and Understanding

 Cortical Shape Representation Using Directed Graphs
Shape Modeling and Representation Primer
Wavelet-based Segmentation, Denoising and Registration
Fast Image Segmentaiton using Wavelets
http://cvs.sourceforge.net/viewcvs.py/eeg/mri_toolbox/segmentation/
Bayesian Complete and Automated Anatomical Segmentation of the Adult MOUSE Brain
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<		 A Unified Framework for Automated Spatial Registration and Volume Segmentation of the Brain (Mike Brady's Group) | | | Another Unified Framework for Automated Spatial Registration and Volume Segmentation of the Brain (PhD Thesis by YM Wang)
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>		 A Unified Framework for Automated Spatial Registration and Volume Segmentation of the Brain (Mike Brady's Group)
Another Unified Framework for Automated Spatial Registration and Volume Segmentation of the Brain (PhD Thesis by YM Wang)

Bayesian Complete and Automated Anatomical Segmentation of the Adult HUMAN Brain

Line: 27 to 27

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<		 The ultimage goal of the Global Segmentation is to accurately estimate the White Matter, Gray Matter and the Cerebro-Spinal Fluid in the entire brain.| Sample data can be obtain from this CCB Download places: http://www.loni.ucla.edu/CCB/Resources/; http://www.loni.ucla.edu/CCB/Resources/CCB_SIG_SEG_TestData.zip and https://services.loni.ucla.edu/ida/login.jsp?search=true|
>
>		 The ultimage goal of the Global Segmentation is to accurately estimate the White Matter, Gray Matter and the Cerebro-Spinal Fluid in the entire brain. Sample data can be obtain from this CCB Download places: http://www.loni.ucla.edu/CCB/Resources/; http://www.loni.ucla.edu/CCB/Resources/CCB_SIG_SEG_TestData.zip and https://services.loni.ucla.edu/ida/login.jsp?search=true

Name Description Literature Details Data
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Regional Segmentaiton Accurate and automated WM/GM/CSF subcortical Segmentation      
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Regional Segmentation Accurate and automated WM/GM/CSF subcortical Segmentation      

Microarray Analysis Develop new mathematical and statistical methods for microarray data analysis Math/Stat of Microarray Modeling Workshop at IMA    
Cortical modeling Cortical Surface Representation http://www.loni.ucla.edu/twiki/pub/CCB/CcbBiologicalProjects/Implicit_Parametric_Representation.pdf      
Topo-Surface Topologically correct surface representation of the cortex      
Line: 42 to 42
Feature Extraction Major sulcal curves http://www.loni.ucla.edu/ad/AD_protocol/sulcal.html    
Gyri Modeling Major Gyri      
Modeling single structures across species        
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Auto Feature Exttraction Unsupervised learning (and modeling) of distributions of feature morphologies (e.g., Bayesian adaptive probability priors on anatomical shapes) Lecture Notes and Code Samples    
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Auto Feature Extraction Unsupervised learning (and modeling) of distributions of feature morphologies (e.g., Bayesian adaptive probability priors on anatomical shapes) Lecture Notes and Code Samples    

Vasculature Automated vasculature segmentation and atlasing (MRA)      
Cytoarchitectonics Automatic cytoarchitectonic delineation      
Lesions WM: stroke, multiple sclerosis; GM: tumors, atrophy      

 <<O>>  Difference Topic CcbBiologicalProjects (r1.23 - 14 Jan 2006 - Main.ccb)

META TOPICPARENT WebHome

CCB Biological Projects

Line: 35 to 35
Cortical modeling Cortical Surface Representation http://www.loni.ucla.edu/twiki/pub/CCB/CcbBiologicalProjects/Implicit_Parametric_Representation.pdf      
Topo-Surface Topologically correct surface representation of the cortex      
Cortical ribbon (inner & outer surface), thickness assessment      
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Shape Representation parametric or implicit      
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Shape Representation parametric or implicit Mathematical Definition of Biological Shape, Form and Size    

Hippocampus Modeling      
Caudate Modeling      
Ventricles Ventricular surface modeling      
Line: 68 to 68

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META FILEATTACHMENT REX_BEMA.pdf attr="" comment="LONI BEMA Segmentation Comparison" date="1112736897" path="REX_BEMA.pdf" size="739001" user="ccb" version="1.1"
META FILEATTACHMENT Rottenberg_Seg_Comparison.pdf attr="" comment="Rottenberg Segmentation Review" date="1112736938" path="Rottenberg_Seg_Comparison.pdf" size="468527" user="ccb" version="1.1"
META FILEATTACHMENT Shattuck01.pdf attr="" comment="Shattuck Brain Suite" date="1112736963" path="Shattuck01.pdf" size="1236459" user="ccb" version="1.1"
Line: 81 to 83
META FILEATTACHMENT Brady_Unified_Registr_Segment.pdf attr="" comment="Unified Framework for Spatial Registration and Volume Segmentation" date="1125084483" path="Brady_Unified_Registr_Segment.pdf" size="207600" user="ccb" version="1.1"
META FILEATTACHMENT Thesis_YMWang.pdf attr="" comment="YM Wang's PhD Thesis on Unified Statistical Framework for Registration and Segmentation (2000)" date="1127159924" path="Thesis_YMWang.pdf" size="2801062" user="ccb" version="1.1"
META FILEATTACHMENT 01318723.pdf attr="" comment="" date="1132707109" path="01318723.pdf" size="1217787" user="ccb" version="1.1"
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META FILEATTACHMENT Monteiro_ShapeFormSize_Paper.pdf attr="" comment="Mathematical Definition of Biological Shape, Form and Size" date="1137201509" path="Monteiro_ShapeFormSize_Paper.pdf" size="168922" user="ccb" version="1.1"

META TOPICMOVED linda date="1109106608" from="CCB.CcbBiologicalProblems" to="CCB.CcbBiologicalProjects"

 <<O>>  Difference Topic CcbBiologicalProjects (r1.22 - 07 Dec 2005 - Main.ccb)

META TOPICPARENT WebHome

CCB Biological Projects

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  • Specific Biological Problems addressed by the CCB SIGs

 <<O>>  Difference Topic CcbBiologicalProjects (r1.21 - 07 Dec 2005 - Main.ccb)

META TOPICPARENT WebHome

CCB Biological Projects

Deleted:
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Name Description Literature Details Data
Skull-stripping automatic removal of extra-cerebral tissue      
Global Segmentaiton Accurate and automated WM/GM/CSF Brain Segmentation http://www.loni.ucla.edu/twiki/pub/CCB/CcbBiologicalProjects/REX_BEMA.pdf
http://www.loni.ucla.edu/twiki/pub/CCB/CcbBiologicalProjects/Rottenberg_Seg_Comparison.pdf
http://www.loni.ucla.edu/twiki/pub/CCB/CcbBiologicalProjects/Shattuck01.pdf
http://www.pascal-network.org/Workshops/IOR04/Programme/
Online Lecture Notes on Digital Image Analysis and Understanding 		   

Cortical Shape Representation Using Directed Graphs

Shape Modeling and Representation Primer


Changed:
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<		 Wavelet-based Segmentation, Denoising and Registration
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Changed:
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<		 Fast Image Segmentaiton using Wavelets
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  • Specific Biological Problems addressed by the CCB SIGs

Changed:
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<		 http://cvs.sourceforge.net/viewcvs.py/eeg/mri_toolbox/segmentation/

Bayesian Complete and Automated Anatomical Segmentation of the Adult MOUSE Brain

A Unified Framework for Automated Spatial Registration and Volume Segmentation of the Brain (Mike Brady's Group)

>
>

Added:
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Name Description Literature Details Data
Skull-stripping automatic removal of extra-cerebral tissue      
|Global Segmentaiton | Accurate and automated WM/GM/CSF Brain Segmentation | http://www.loni.ucla.edu/twiki/pub/CCB/CcbBiologicalProjects/REX_BEMA.pdf
http://www.loni.ucla.edu/twiki/pub/CCB/CcbBiologicalProjects/Rottenberg_Seg_Comparison.pdf
http://www.loni.ucla.edu/twiki/pub/CCB/CcbBiologicalProjects/Shattuck01.pdf
http://www.pascal-network.org/Workshops/IOR04/Programme/
Online Lecture Notes on Digital Image Analysis and Understanding
Cortical Shape Representation Using Directed Graphs
Shape Modeling and Representation Primer
Wavelet-based Segmentation, Denoising and Registration
Fast Image Segmentaiton using Wavelets
http://cvs.sourceforge.net/viewcvs.py/eeg/mri_toolbox/segmentation/
Bayesian Complete and Automated Anatomical Segmentation of the Adult MOUSE Brain
A Unified Framework for Automated Spatial Registration and Volume Segmentation of the Brain (Mike Brady's Group) | | |

Another Unified Framework for Automated Spatial Registration and Volume Segmentation of the Brain (PhD Thesis by YM Wang)

Bayesian Complete and Automated Anatomical Segmentation of the Adult HUMAN Brain


 <<O>>  Difference Topic CcbBiologicalProjects (r1.20 - 23 Nov 2005 - Main.ccb)

META TOPICPARENT WebHome

CCB Biological Projects

Line: 8 to 8
Skull-stripping automatic removal of extra-cerebral tissue      
Global Segmentaiton Accurate and automated WM/GM/CSF Brain Segmentation http://www.loni.ucla.edu/twiki/pub/CCB/CcbBiologicalProjects/REX_BEMA.pdf
http://www.loni.ucla.edu/twiki/pub/CCB/CcbBiologicalProjects/Rottenberg_Seg_Comparison.pdf
http://www.loni.ucla.edu/twiki/pub/CCB/CcbBiologicalProjects/Shattuck01.pdf
http://www.pascal-network.org/Workshops/IOR04/Programme/
Online Lecture Notes on Digital Image Analysis and Understanding 		   
Added:
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>		 Cortical Shape Representation Using Directed Graphs

Shape Modeling and Representation Primer

Wavelet-based Segmentation, Denoising and Registration

Line: 67 to 69

  • Thesis_YMWang.pdf: YM Wang's PhD Thesis on Unified Statistical Framework for Registration and Segmentation (2000)
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META FILEATTACHMENT REX_BEMA.pdf attr="" comment="LONI BEMA Segmentation Comparison" date="1112736897" path="REX_BEMA.pdf" size="739001" user="ccb" version="1.1"
META FILEATTACHMENT Rottenberg_Seg_Comparison.pdf attr="" comment="Rottenberg Segmentation Review" date="1112736938" path="Rottenberg_Seg_Comparison.pdf" size="468527" user="ccb" version="1.1"
META FILEATTACHMENT Shattuck01.pdf attr="" comment="Shattuck Brain Suite" date="1112736963" path="Shattuck01.pdf" size="1236459" user="ccb" version="1.1"
Line: 79 to 83
META FILEATTACHMENT Complete_LevelSet_SegmentationTutorial.pdf attr="" comment="The Complete Level-Set Brain Image Processing Archive" date="1123713038" path="Complete_LevelSet_SegmentationTutorial.pdf" size="716145" user="ccb" version="1.1"
META FILEATTACHMENT Brady_Unified_Registr_Segment.pdf attr="" comment="Unified Framework for Spatial Registration and Volume Segmentation" date="1125084483" path="Brady_Unified_Registr_Segment.pdf" size="207600" user="ccb" version="1.1"
META FILEATTACHMENT Thesis_YMWang.pdf attr="" comment="YM Wang's PhD Thesis on Unified Statistical Framework for Registration and Segmentation (2000)" date="1127159924" path="Thesis_YMWang.pdf" size="2801062" user="ccb" version="1.1"
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META FILEATTACHMENT 01318723.pdf attr="" comment="" date="1132707109" path="01318723.pdf" size="1217787" user="ccb" version="1.1"

META TOPICMOVED linda date="1109106608" from="CCB.CcbBiologicalProblems" to="CCB.CcbBiologicalProjects"

 <<O>>  Difference Topic CcbBiologicalProjects (r1.19 - 02 Oct 2005 - Main.ccb)

META TOPICPARENT WebHome

CCB Biological Projects

Line: 22 to 22

Another Unified Framework for Automated Spatial Registration and Volume Segmentation of the Brain (PhD Thesis by YM Wang)

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<		 Bayesian Complete and Automated Anatomical Segmentation of the Adult HUMAN Brain
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>		 Bayesian Complete and Automated Anatomical Segmentation of the Adult HUMAN Brain

The most comlete tutorial on level-set-based tools for brain image progessing - a must-read for anyone using level-sets


 <<O>>  Difference Topic CcbBiologicalProjects (r1.18 - 19 Sep 2005 - Main.ccb)

META TOPICPARENT WebHome

CCB Biological Projects

Line: 18 to 18

Bayesian Complete and Automated Anatomical Segmentation of the Adult MOUSE Brain

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<		 A Unified Framework for Automated Spatial Registration and Volume Segmentation of the Brain
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>		 A Unified Framework for Automated Spatial Registration and Volume Segmentation of the Brain (Mike Brady's Group)

Another Unified Framework for Automated Spatial Registration and Volume Segmentation of the Brain (PhD Thesis by YM Wang)


Bayesian Complete and Automated Anatomical Segmentation of the Adult HUMAN Brain

Line: 63 to 65

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  • Thesis_YMWang.pdf: YM Wang's PhD Thesis on Unified Statistical Framework for Registration and Segmentation (2000)

META FILEATTACHMENT REX_BEMA.pdf attr="" comment="LONI BEMA Segmentation Comparison" date="1112736897" path="REX_BEMA.pdf" size="739001" user="ccb" version="1.1"
META FILEATTACHMENT Rottenberg_Seg_Comparison.pdf attr="" comment="Rottenberg Segmentation Review" date="1112736938" path="Rottenberg_Seg_Comparison.pdf" size="468527" user="ccb" version="1.1"
META FILEATTACHMENT Shattuck01.pdf attr="" comment="Shattuck Brain Suite" date="1112736963" path="Shattuck01.pdf" size="1236459" user="ccb" version="1.1"
Line: 74 to 78
META FILEATTACHMENT Fischl_HumanAutoSeg.pdf attr="" comment="Fischl's Complete Automated Human Brain Segmentation" date="1123528071" path="Fischl_HumanAutoSeg.pdf" size="462601" user="ccb" version="1.1"
META FILEATTACHMENT Complete_LevelSet_SegmentationTutorial.pdf attr="" comment="The Complete Level-Set Brain Image Processing Archive" date="1123713038" path="Complete_LevelSet_SegmentationTutorial.pdf" size="716145" user="ccb" version="1.1"
META FILEATTACHMENT Brady_Unified_Registr_Segment.pdf attr="" comment="Unified Framework for Spatial Registration and Volume Segmentation" date="1125084483" path="Brady_Unified_Registr_Segment.pdf" size="207600" user="ccb" version="1.1"
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META FILEATTACHMENT Thesis_YMWang.pdf attr="" comment="YM Wang's PhD Thesis on Unified Statistical Framework for Registration and Segmentation (2000)" date="1127159924" path="Thesis_YMWang.pdf" size="2801062" user="ccb" version="1.1"

META TOPICMOVED linda date="1109106608" from="CCB.CcbBiologicalProblems" to="CCB.CcbBiologicalProjects"

 <<O>>  Difference Topic CcbBiologicalProjects (r1.17 - 26 Aug 2005 - Main.ccb)

META TOPICPARENT WebHome

CCB Biological Projects

Line: 18 to 18

Bayesian Complete and Automated Anatomical Segmentation of the Adult MOUSE Brain

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>		 A Unified Framework for Automated Spatial Registration and Volume Segmentation of the Brain

Bayesian Complete and Automated Anatomical Segmentation of the Adult HUMAN Brain

The most comlete tutorial on level-set-based tools for brain image progessing - a must-read for anyone using level-sets

Line: 59 to 61

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META FILEATTACHMENT REX_BEMA.pdf attr="" comment="LONI BEMA Segmentation Comparison" date="1112736897" path="REX_BEMA.pdf" size="739001" user="ccb" version="1.1"
META FILEATTACHMENT Rottenberg_Seg_Comparison.pdf attr="" comment="Rottenberg Segmentation Review" date="1112736938" path="Rottenberg_Seg_Comparison.pdf" size="468527" user="ccb" version="1.1"
META FILEATTACHMENT Shattuck01.pdf attr="" comment="Shattuck Brain Suite" date="1112736963" path="Shattuck01.pdf" size="1236459" user="ccb" version="1.1"
Line: 69 to 73
META FILEATTACHMENT Ali_MouseAutoSeg.pdf attr="" comment="A.Ali's Complete Automatic Mouse Brain Segmentation" date="1123528006" path="Ali_MouseAutoSeg.pdf" size="1826876" user="ccb" version="1.1"
META FILEATTACHMENT Fischl_HumanAutoSeg.pdf attr="" comment="Fischl's Complete Automated Human Brain Segmentation" date="1123528071" path="Fischl_HumanAutoSeg.pdf" size="462601" user="ccb" version="1.1"
META FILEATTACHMENT Complete_LevelSet_SegmentationTutorial.pdf attr="" comment="The Complete Level-Set Brain Image Processing Archive" date="1123713038" path="Complete_LevelSet_SegmentationTutorial.pdf" size="716145" user="ccb" version="1.1"
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META FILEATTACHMENT Brady_Unified_Registr_Segment.pdf attr="" comment="Unified Framework for Spatial Registration and Volume Segmentation" date="1125084483" path="Brady_Unified_Registr_Segment.pdf" size="207600" user="ccb" version="1.1"

META TOPICMOVED linda date="1109106608" from="CCB.CcbBiologicalProblems" to="CCB.CcbBiologicalProjects"

 <<O>>  Difference Topic CcbBiologicalProjects (r1.16 - 23 Aug 2005 - Main.ccb)

META TOPICPARENT WebHome

CCB Biological Projects

Line: 39 to 39
Feature Extraction Major sulcal curves http://www.loni.ucla.edu/ad/AD_protocol/sulcal.html    
Gyri Modeling Major Gyri      
Modeling single structures across species        
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Auto Feature Exttraction Unsupervised learning (and modeling) of distributions of feature morphologies (e.g., Bayesian adaptive probability priors on anatomical shapes)      
>
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Auto Feature Exttraction Unsupervised learning (and modeling) of distributions of feature morphologies (e.g., Bayesian adaptive probability priors on anatomical shapes) Lecture Notes and Code Samples    

Vasculature Automated vasculature segmentation and atlasing (MRA)      
Cytoarchitectonics Automatic cytoarchitectonic delineation      
Lesions WM: stroke, multiple sclerosis; GM: tumors, atrophy      

 <<O>>  Difference Topic CcbBiologicalProjects (r1.15 - 10 Aug 2005 - Main.ccb)

META TOPICPARENT WebHome

CCB Biological Projects

Line: 20 to 20

Bayesian Complete and Automated Anatomical Segmentation of the Adult HUMAN Brain

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>		 The most comlete tutorial on level-set-based tools for brain image progessing - a must-read for anyone using level-sets

The ultimage goal of the Global Segmentation is to accurately estimate the White Matter, Gray Matter and the Cerebro-Spinal Fluid in the entire brain.| Sample data can be obtain from this CCB Download places: http://www.loni.ucla.edu/CCB/Resources/; http://www.loni.ucla.edu/CCB/Resources/CCB_SIG_SEG_TestData.zip and https://services.loni.ucla.edu/ida/login.jsp?search=true|

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META FILEATTACHMENT REX_BEMA.pdf attr="" comment="LONI BEMA Segmentation Comparison" date="1112736897" path="REX_BEMA.pdf" size="739001" user="ccb" version="1.1"
META FILEATTACHMENT Rottenberg_Seg_Comparison.pdf attr="" comment="Rottenberg Segmentation Review" date="1112736938" path="Rottenberg_Seg_Comparison.pdf" size="468527" user="ccb" version="1.1"
META FILEATTACHMENT Shattuck01.pdf attr="" comment="Shattuck Brain Suite" date="1112736963" path="Shattuck01.pdf" size="1236459" user="ccb" version="1.1"
Line: 63 to 68
META FILEATTACHMENT Implicit_Parametric_Representation.pdf attr="" comment="Implicit and Parameteric Surfaces: Pros & Cons" date="1121972673" path="Implicit_Parametric_Representation.pdf" size="293201" user="ccb" version="1.1"
META FILEATTACHMENT Ali_MouseAutoSeg.pdf attr="" comment="A.Ali's Complete Automatic Mouse Brain Segmentation" date="1123528006" path="Ali_MouseAutoSeg.pdf" size="1826876" user="ccb" version="1.1"
META FILEATTACHMENT Fischl_HumanAutoSeg.pdf attr="" comment="Fischl's Complete Automated Human Brain Segmentation" date="1123528071" path="Fischl_HumanAutoSeg.pdf" size="462601" user="ccb" version="1.1"
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META FILEATTACHMENT Complete_LevelSet_SegmentationTutorial.pdf attr="" comment="The Complete Level-Set Brain Image Processing Archive" date="1123713038" path="Complete_LevelSet_SegmentationTutorial.pdf" size="716145" user="ccb" version="1.1"

META TOPICMOVED linda date="1109106608" from="CCB.CcbBiologicalProblems" to="CCB.CcbBiologicalProjects"

 <<O>>  Difference Topic CcbBiologicalProjects (r1.14 - 09 Aug 2005 - CraigSchwartz)

META TOPICPARENT WebHome

CCB Biological Projects

Line: 6 to 6

Name Description Literature Details Data
Skull-stripping automatic removal of extra-cerebral tissue      
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Name Description Literature Details Data
|Global Segmentaiton | Accurate and automated WM/GM/CSF Brain Segmentation | http://www.loni.ucla.edu/twiki/pub/CCB/CcbBiologicalProjects/REX_BEMA.pdf http://www.loni.ucla.edu/twiki/pub/CCB/CcbBiologicalProjects/Rottenberg_Seg_Comparison.pdf http://www.loni.ucla.edu/twiki/pub/CCB/CcbBiologicalProjects/Shattuck01.pdf http://www.pascal-network.org/Workshops/IOR04/Programme/ and Online Lecture Notes on Digital Image Analysis and Understanding
>
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Global Segmentaiton Accurate and automated WM/GM/CSF Brain Segmentation http://www.loni.ucla.edu/twiki/pub/CCB/CcbBiologicalProjects/REX_BEMA.pdf
http://www.loni.ucla.edu/twiki/pub/CCB/CcbBiologicalProjects/Rottenberg_Seg_Comparison.pdf
http://www.loni.ucla.edu/twiki/pub/CCB/CcbBiologicalProjects/Shattuck01.pdf
http://www.pascal-network.org/Workshops/IOR04/Programme/
Online Lecture Notes on Digital Image Analysis and Understanding 		   

Shape Modeling and Representation Primer

Line: 23 to 20

Bayesian Complete and Automated Anatomical Segmentation of the Adult HUMAN Brain

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The ultimage goal of the Global Segmentation is to accurately estimate the White Matter, Gray Matter and the Cerebro-Spinal Fluid in the entire brain.| Sample data can be obtain from this CCB Download places: http://www.loni.ucla.edu/CCB/Resources/; http://www.loni.ucla.edu/CCB/Resources/CCB_SIG_SEG_TestData.zip and https://services.loni.ucla.edu/ida/login.jsp?search=true|

Name Description Literature Details Data
Regional Segmentaiton Accurate and automated WM/GM/CSF subcortical Segmentation      
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Name Description Literature Details Data

Microarray Analysis Develop new mathematical and statistical methods for microarray data analysis Math/Stat of Microarray Modeling Workshop at IMA    
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Name Description Literature Details Data

Cortical modeling Cortical Surface Representation http://www.loni.ucla.edu/twiki/pub/CCB/CcbBiologicalProjects/Implicit_Parametric_Representation.pdf      
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Name Description Literature Details Data

Topo-Surface Topologically correct surface representation of the cortex      
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Name Description Literature Details Data

Cortical ribbon (inner & outer surface), thickness assessment      
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Name Description Literature Details Data

Shape Representation parametric or implicit      
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Name Description Literature Details Data

Hippocampus Modeling      
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Name Description Literature Details Data

Caudate Modeling      
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Name Description Literature Details Data

Ventricles Ventricular surface modeling      
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Name Description Literature Details Data

Feature Extraction Major sulcal curves http://www.loni.ucla.edu/ad/AD_protocol/sulcal.html    
Deleted:
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Name Description Literature Details Data

Gyri Modeling Major Gyri      
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Name Description Literature Details Data

Modeling single structures across species        
Deleted:
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Name Description Literature Details Data

Auto Feature Exttraction Unsupervised learning (and modeling) of distributions of feature morphologies (e.g., Bayesian adaptive probability priors on anatomical shapes)      
Deleted:
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Name Description Literature Details Data

Vasculature Automated vasculature segmentation and atlasing (MRA)      
Deleted:
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Name Description Literature Details Data

Cytoarchitectonics Automatic cytoarchitectonic delineation      
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Name Description Literature Details Data

Lesions WM: stroke, multiple sclerosis; GM: tumors, atrophy      
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Name Description Literature Details Data

DTI Segmentation & denoising of DTI data      


 <<O>>  Difference Topic CcbBiologicalProjects (r1.13 - 08 Aug 2005 - Main.ccb)

META TOPICPARENT WebHome

CCB Biological Projects

Line: 9 to 9

Name Description Literature Details Data
|Global Segmentaiton | Accurate and automated WM/GM/CSF Brain Segmentation | http://www.loni.ucla.edu/twiki/pub/CCB/CcbBiologicalProjects/REX_BEMA.pdf http://www.loni.ucla.edu/twiki/pub/CCB/CcbBiologicalProjects/Rottenberg_Seg_Comparison.pdf http://www.loni.ucla.edu/twiki/pub/CCB/CcbBiologicalProjects/Shattuck01.pdf http://www.pascal-network.org/Workshops/IOR04/Programme/
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<		 and Online Lecture Notes on Digital Image Analysis and Understanding Shape Modeling and Representation Primer
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>		 and Online Lecture Notes on Digital Image Analysis and Understanding

Shape Modeling and Representation Primer


Wavelet-based Segmentation, Denoising and Registration
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Fast Image Segmentaiton using Wavelets
Added:
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http://cvs.sourceforge.net/viewcvs.py/eeg/mri_toolbox/segmentation/
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Bayesian Complete and Automated Anatomical Segmentation of the Adult MOUSE Brain

Bayesian Complete and Automated Anatomical Segmentation of the Adult HUMAN Brain


   
Line: 77 to 87

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META FILEATTACHMENT REX_BEMA.pdf attr="" comment="LONI BEMA Segmentation Comparison" date="1112736897" path="REX_BEMA.pdf" size="739001" user="ccb" version="1.1"
META FILEATTACHMENT Rottenberg_Seg_Comparison.pdf attr="" comment="Rottenberg Segmentation Review" date="1112736938" path="Rottenberg_Seg_Comparison.pdf" size="468527" user="ccb" version="1.1"
META FILEATTACHMENT Shattuck01.pdf attr="" comment="Shattuck Brain Suite" date="1112736963" path="Shattuck01.pdf" size="1236459" user="ccb" version="1.1"
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META FILEATTACHMENT 91-pdf.pdf attr="" comment="Wavelet-based Segmentation, Denoising and Registration" date="1118363860" path="91-pdf.pdf" size="1214049" user="ccb" version="1.1"
META FILEATTACHMENT sdarticle.pdf attr="" comment="Fast Image Segmentaiton using Wavelets" date="1118364441" path="sdarticle.pdf" size="434911" user="ccb" version="1.1"
META FILEATTACHMENT Implicit_Parametric_Representation.pdf attr="" comment="Implicit and Parameteric Surfaces: Pros & Cons" date="1121972673" path="Implicit_Parametric_Representation.pdf" size="293201" user="ccb" version="1.1"
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META FILEATTACHMENT Ali_MouseAutoSeg.pdf attr="" comment="A.Ali's Complete Automatic Mouse Brain Segmentation" date="1123528006" path="Ali_MouseAutoSeg.pdf" size="1826876" user="ccb" version="1.1"
META FILEATTACHMENT Fischl_HumanAutoSeg.pdf attr="" comment="Fischl's Complete Automated Human Brain Segmentation" date="1123528071" path="Fischl_HumanAutoSeg.pdf" size="462601" user="ccb" version="1.1"

META TOPICMOVED linda date="1109106608" from="CCB.CcbBiologicalProblems" to="CCB.CcbBiologicalProjects"

 <<O>>  Difference Topic CcbBiologicalProjects (r1.12 - 21 Jul 2005 - Main.ccb)

META TOPICPARENT WebHome

CCB Biological Projects

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Microarray Analysis Develop new mathematical and statistical methods for microarray data analysis <