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CCB Pipeline Workflows - Documentation and Usage
Overview
page is the home of the usage and docs pages of all newly developed and distributed Pipeline modules and workflows.
Automated Tissue Volume Extraction Workflow
This workflow takes raw un-skull-stripped volumes and generates tables of the total, GM, WM and CSF volumes.
Automated 56-ROI Brain Volume Extraction Workflow
This workflow takes raw un-skull-stripped volumes and generates tables of the volumes for all 56 ROIs currently automatically extracted using LONI BrainParser.
Template Workflow Usage/Docs page
Template Workflow Usage/Docs page
Committing Pipeline Workflows to core Pipeline server library
- IVO DINOV: Confirm that source code is in LONI SVN repo and validate application build.
- ALEN/SHRUTHI: Test the stand-alone application on known good datasets. Validate results.
- SYS ADMINS: Install application in /usr/local of cerebro-rcc and Cranium cluster.
- ALEN/SHRUTHI: Integrate the application into a Pipeline workflow. Test on development cluster and validate results.
- ALEN/SHRUTHI: Test on production cluster and validate results.
- ALEN/SHRUTHI:Deploy workflow on
* Development (Server:Cranium-Dev)
* Production(Server:Cranium-Prod)
* Try-Me (contact Amanda)
* Training (Server:Cranium-edu)
- Module/Workflow Wiki page (docs and usage).
- PIPELINE Group: Add workflow to Pipeline distribution.
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