CCB.SIGPNS_Summer2009_BG_CS (r1.1 vs. r1.7)
Diffs

 <<O>>  Difference Topic SIGPNS_Summer2009_BG_CS (r1.7 - 30 Oct 2009 - BorisGutman)

META TOPICPARENT SIGPNS

CCB SIG: Pipeline Neuroimaging Solutions (SIG-PNS) - Minimum Distance Template (MDT) Atlasing Pipeline (October 16, 2009; 2:30 PM, DIVE)

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META FILEATTACHMENT LONI_MDT_Atlas_NRU_Data.wmv attr="h" comment="" date="1255724167" path="LONI_MDT_Atlas_NRU_Data.wmv" size="1637735" user="dinov" version="1.1"
META FILEATTACHMENT NRU_1SungleBrainTemlpateReg.wmv attr="h" comment="" date="1255724213" path="NRU_1SungleBrainTemlpateReg.wmv" size="1493735" user="dinov" version="1.1"
META FILEATTACHMENT NRU_ImgVaria_DefCom_20091016_cinepak1.wmv attr="h" comment="" date="1255724319" path="NRU_ImgVaria_DefCom_20091016_cinepak1.wmv" size="2261735" user="dinov" version="1.1"
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META FILEATTACHMENT MDT_with_KLMI_v7.pipe attr="" comment="This is the original MDT atlas construction" date="1255727270" path="MDT_with_KLMI_v7.pipe" size="128354" user="bgutman" version="1.1"
META FILEATTACHMENT KL_MI_existing_atlas.pipe attr="" comment="general use of KL_MI with an existing standard atlas" date="1255727329" path="KL_MI_existing_atlas.pipe" size="93513" user="bgutman" version="1.1"
META FILEATTACHMENT KL_MI_existing_atlas_nru.pipe attr="" comment="" date="1255727358" path="KL_MI_existing_atlas_nru.pipe" size="37777" user="bgutman" version="1.1"
META FILEATTACHMENT MDT_with_KLMI_no_inverse.pipe attr="" comment="This is the MDT construction minus the mapping ot the middle of the common space" date="1255727439" path="MDT_with_KLMI_no_inverse.pipe" size="112118" user="bgutman" version="1.1"
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META FILEATTACHMENT MDT_with_KLMI_v7.pipe attr="" comment="This is the original MDT atlas construction" date="1256867853" path="MDT_with_KLMI_v7.pipe" size="124904" user="bgutman" version="1.2"
META FILEATTACHMENT KL_MI_existing_atlas.pipe attr="" comment="general use of KL_MI with an existing standard atlas" date="1256868511" path="KL_MI_existing_atlas.pipe" size="88102" user="bgutman" version="1.2"
META FILEATTACHMENT KL_MI_existing_atlas_nru.pipe attr="" comment="" date="1256868527" path="KL_MI_existing_atlas_nru.pipe" size="30367" user="bgutman" version="1.2"
META FILEATTACHMENT MDT_with_KLMI_no_inverse.pipe attr="" comment="This is the MDT construction minus the mapping ot the middle of the common space" date="1256868546" path="MDT_with_KLMI_no_inverse.pipe" size="114118" user="bgutman" version="1.2"

 <<O>>  Difference Topic SIGPNS_Summer2009_BG_CS (r1.6 - 16 Oct 2009 - IvoDinov)

META TOPICPARENT SIGPNS

CCB SIG: Pipeline Neuroimaging Solutions (SIG-PNS) - Minimum Distance Template (MDT) Atlasing Pipeline (October 16, 2009; 2:30 PM, DIVE)

Line: 26 to 26
  • Quantitative: The ICBM data will be registered to the MDT, NRU and ICBM 462 atlases and mean displacement stats across all subjects will be reported for each voxel. The distributions of these mean displacement magnitudes for all 3 atlases will also be shown.
  • Qualitative (visual): The resulting MDT atlas will be visually compared to the ICBM 462 atlas and the Danish NRU atlas constructed of the same 100+ subjects.
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Pipeline modules

Module 1

Module 2

Module 3

MDT Pipeline Workflow


Animations

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Feedback & suggestions

  • TBD
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Pipeline Workflows


META FILEATTACHMENT MDT_Atlas_Pipeline_Fig1.png attr="h" comment="" date="1255582203" path="MDT_Atlas_Pipeline_Fig1.png" size="195815" user="dinov" version="1.1"

 <<O>>  Difference Topic SIGPNS_Summer2009_BG_CS (r1.5 - 16 Oct 2009 - BorisGutman)

META TOPICPARENT SIGPNS

CCB SIG: Pipeline Neuroimaging Solutions (SIG-PNS) - Minimum Distance Template (MDT) Atlasing Pipeline (October 16, 2009; 2:30 PM, DIVE)

Line: 43 to 43

Feedback & suggestions

  • TBD
Added:
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META FILEATTACHMENT MDT_Atlas_Pipeline_Fig1.png attr="h" comment="" date="1255582203" path="MDT_Atlas_Pipeline_Fig1.png" size="195815" user="dinov" version="1.1"
META FILEATTACHMENT LONI_MDT_Atlas_NRU_Data.wmv attr="h" comment="" date="1255724167" path="LONI_MDT_Atlas_NRU_Data.wmv" size="1637735" user="dinov" version="1.1"
META FILEATTACHMENT NRU_1SungleBrainTemlpateReg.wmv attr="h" comment="" date="1255724213" path="NRU_1SungleBrainTemlpateReg.wmv" size="1493735" user="dinov" version="1.1"
META FILEATTACHMENT NRU_ImgVaria_DefCom_20091016_cinepak1.wmv attr="h" comment="" date="1255724319" path="NRU_ImgVaria_DefCom_20091016_cinepak1.wmv" size="2261735" user="dinov" version="1.1"
Added:
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META FILEATTACHMENT MDT_with_KLMI_v7.pipe attr="" comment="This is the original MDT atlas construction" date="1255727270" path="MDT_with_KLMI_v7.pipe" size="128354" user="bgutman" version="1.1"
META FILEATTACHMENT KL_MI_existing_atlas.pipe attr="" comment="general use of KL_MI with an existing standard atlas" date="1255727329" path="KL_MI_existing_atlas.pipe" size="93513" user="bgutman" version="1.1"
META FILEATTACHMENT KL_MI_existing_atlas_nru.pipe attr="" comment="" date="1255727358" path="KL_MI_existing_atlas_nru.pipe" size="37777" user="bgutman" version="1.1"
META FILEATTACHMENT MDT_with_KLMI_no_inverse.pipe attr="" comment="This is the MDT construction minus the mapping ot the middle of the common space" date="1255727439" path="MDT_with_KLMI_no_inverse.pipe" size="112118" user="bgutman" version="1.1"

 <<O>>  Difference Topic SIGPNS_Summer2009_BG_CS (r1.4 - 16 Oct 2009 - IvoDinov)

META TOPICPARENT SIGPNS

CCB SIG: Pipeline Neuroimaging Solutions (SIG-PNS) - Minimum Distance Template (MDT) Atlasing Pipeline (October 16, 2009; 2:30 PM, DIVE)

Line: 37 to 35

MDT Pipeline Workflow

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Feedback & suggestions

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Animations

Feedback & suggestions


  • TBD

META FILEATTACHMENT MDT_Atlas_Pipeline_Fig1.png attr="h" comment="" date="1255582203" path="MDT_Atlas_Pipeline_Fig1.png" size="195815" user="dinov" version="1.1"
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META FILEATTACHMENT LONI_MDT_Atlas_NRU_Data.wmv attr="h" comment="" date="1255724167" path="LONI_MDT_Atlas_NRU_Data.wmv" size="1637735" user="dinov" version="1.1"
META FILEATTACHMENT NRU_1SungleBrainTemlpateReg.wmv attr="h" comment="" date="1255724213" path="NRU_1SungleBrainTemlpateReg.wmv" size="1493735" user="dinov" version="1.1"
META FILEATTACHMENT NRU_ImgVaria_DefCom_20091016_cinepak1.wmv attr="h" comment="" date="1255724319" path="NRU_ImgVaria_DefCom_20091016_cinepak1.wmv" size="2261735" user="dinov" version="1.1"

 <<O>>  Difference Topic SIGPNS_Summer2009_BG_CS (r1.3 - 15 Oct 2009 - IvoDinov)

META TOPICPARENT SIGPNS

CCB SIG: Pipeline Neuroimaging Solutions (SIG-PNS) - Minimum Distance Template (MDT) Atlasing Pipeline (October 16, 2009; 2:30 PM, DIVE)

Line: 9 to 9

Logistics

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MDT_Atlas_Pipeline_Fig1.png

Overview

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<		 This demo will present the redesigned automated Pipeline workflow for constructing hte Minimum Distance Template (MDT) atlas for a given population, based on one specific image modality (e.g., sMRI).
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>		 This demo will present the redesigned automated Pipeline workflow for constructing the Minimum Distance Template (MDT) atlas for a given population, based on one specific image modality (e.g., sMRI). There will be two specific validation examples based on 100+ ICBM subjects:
  • Quantitative: The ICBM data will be registered to the MDT, NRU and ICBM 462 atlases and mean displacement stats across all subjects will be reported for each voxel. The distributions of these mean displacement magnitudes for all 3 atlases will also be shown.
  • Qualitative (visual): The resulting MDT atlas will be visually compared to the ICBM 462 atlas and the Danish NRU atlas constructed of the same 100+ subjects.

Pipeline modules

Module 1

Line: 27 to 40

Feedback & suggestions

  • TBD
Added:
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META FILEATTACHMENT MDT_Atlas_Pipeline_Fig1.png attr="h" comment="" date="1255582203" path="MDT_Atlas_Pipeline_Fig1.png" size="195815" user="dinov" version="1.1"

 <<O>>  Difference Topic SIGPNS_Summer2009_BG_CS (r1.2 - 09 Oct 2009 - IvoDinov)

META TOPICPARENT SIGPNS
Changed:
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CCB SIG: Pipeline Neuroimaging Solutions (SIG-PNS) - Minimum Distance Template (MDT) Atlasing Pipeline (October 08, 2009; 3:30 PM, DIVE)

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CCB SIG: Pipeline Neuroimaging Solutions (SIG-PNS) - Minimum Distance Template (MDT) Atlasing Pipeline (October 16, 2009; 2:30 PM, DIVE)


Line: 10 to 10

Logistics

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  • Date/Time/Place: Thu., October 08, 2009; 3:30 PM, DIVE
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  • Date/Time/Place: Fri., October 16, 2009; 2:30 PM, DIVE

Overview

This demo will present the redesigned automated Pipeline workflow for constructing hte Minimum Distance Template (MDT) atlas for a given population, based on one specific image modality (e.g., sMRI).

 <<O>>  Difference Topic SIGPNS_Summer2009_BG_CS (r1.1 - 30 Sep 2009 - IvoDinov)
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META TOPICPARENT SIGPNS

CCB SIG: Pipeline Neuroimaging Solutions (SIG-PNS) - Minimum Distance Template (MDT) Atlasing Pipeline (October 08, 2009; 3:30 PM, DIVE)

Logistics

Overview

This demo will present the redesigned automated Pipeline workflow for constructing hte Minimum Distance Template (MDT) atlas for a given population, based on one specific image modality (e.g., sMRI).

Pipeline modules

Module 1

Module 2

Module 3

MDT Pipeline Workflow

Feedback & suggestions

  • TBD

Topic: SIGPNS_Summer2009_BG_CS . { View | Diffs | r1.7 | > | r1.6 | > | r1.5 | More }

Revision r1.1 - 30 Sep 2009 - 16:56 - IvoDinov
Revision r1.7 - 30 Oct 2009 - 02:00 - BorisGutman