CCB.ShapeToolLibraryProgram (r1.1 vs. r1.271)
Diffs

 <<O>>  Difference Topic ShapeToolLibraryProgram (r1.271 - 01 Apr 2008 - CraigSchwartz)

META TOPICPARENT CCBSIGS
Line: 57 to 57
These projects are being planned:
Deleted:
<
<		 Shape Split - splits a shape into pieces.

Array IO Library - provides readers and writers of numerical arrays, stored in a variety of file formats.

<!--

Line: 122 to 120

ShapeDistance - A program to measure the distance between the vertices of two (homologous) shapes.

Added:
>
>		 Shape Split - splits a shape into pieces.

Shape Statistics - calculate per-vertex statistics for a population of shapes.

ShapeTransform - A program that applies an AIR transform or a user specified rotation to the coordinates of a Shape's vertices.


 <<O>>  Difference Topic ShapeToolLibraryProgram (r1.270 - 14 Mar 2008 - CraigSchwartz)

META TOPICPARENT CCBSIGS
Line: 57 to 57
These projects are being planned:
Added:
>
>		 Shape Split - splits a shape into pieces.

Array IO Library - provides readers and writers of numerical arrays, stored in a variety of file formats.

<!--


 <<O>>  Difference Topic ShapeToolLibraryProgram (r1.269 - 04 Mar 2008 - CraigSchwartz)

META TOPICPARENT CCBSIGS
Line: 40 to 40

DataReaderWriter Library?: A java library providing a consistent interface to a variety of data sources and sinks.

Deleted:
<
<		 DirectoryTool : Provides cross platform directory utilities useful in creating application protocols.

ListFilter : Selects lines from a text list.

Renamer : renames a set of files to new file names , based on a list of names, and a transformation pattern.

Array IO Library - provides readers and writers of numerical arrays, stored in a variety of file formats.


<!--

Line: 64 to 57
These projects are being planned:
Changed:
<
<		 <!--
>
>		 Array IO Library - provides readers and writers of numerical arrays, stored in a variety of file formats.

Added:
>
>		 <!--

DelaunayTriangulation - Creates a Delauny triangulation of a surface.
Deleted:
<
<

-->
Deleted:
<
<

<!-- Elastic Warp - Warps images using an elastic warp. -->
Line: 87 to 78

Convex Hull - A program to create convex hull of a given set of points.

Added:
>
>		 DirectoryTool : Provides cross platform directory utilities useful in creating application protocols.

DuffOffTranslator - A program that can convert between the Duff and Off formats.

Extract4DucfAttributes - A program that extracts from a Ucf file it's data attribute column. (obsoleted by ExtractAttributes)

Line: 103 to 96

InterpolateContour - A program to interpolate the vertices and data attributes of contour files (was InterpolateUcf?).

Added:
>
>		 ListFilter : Selects lines from a text list.

Map Contour - Maps a contour according to a transform defined by the corrospondences of the faces of two homologous shapes.

Medial Distance Calculator - a Java application that computes and stores the distance between the vertices of a shape , defined as a group of contours, and a line passing through the centers of each of the contours.

ObjTranslation - A program to translate Minc Obj format files into OFF files.

Added:
>
>		 Renamer : renames a set of files to new file names , based on a list of names, and a transformation pattern.

RigidAtlas - Computes an atlas from a group of shapes, using the RigidQuaternionTransform to align the shapes to the atlas.

Rigid Quaternion Transform - Calculates a rigid quaternion transform that maps one set of vertices onto another, given the correspondences between the two sets of vertices.


 <<O>>  Difference Topic ShapeToolLibraryProgram (r1.268 - 27 Feb 2008 - CraigSchwartz)

META TOPICPARENT CCBSIGS
Line: 42 to 42

DirectoryTool : Provides cross platform directory utilities useful in creating application protocols.

Added:
>
>		 ListFilter : Selects lines from a text list.

Renamer : renames a set of files to new file names , based on a list of names, and a transformation pattern.

Array IO Library - provides readers and writers of numerical arrays, stored in a variety of file formats.


 <<O>>  Difference Topic ShapeToolLibraryProgram (r1.267 - 14 Feb 2008 - CraigSchwartz)

META TOPICPARENT CCBSIGS
Line: 32 to 32

 These projects are active:
Deleted:
<
<		 ArrayStatistics: calculates statistics for a set of numerical arrays.

Shape Viewer : An application program which uses Java3D to display shapes in a 3 dimensional viewer (v1.2).
Line: 42 to 40

DataReaderWriter Library?: A java library providing a consistent interface to a variety of data sources and sinks.

Added:
>
>		 DirectoryTool : Provides cross platform directory utilities useful in creating application protocols.

Changed:
<
<		 Automatic Statistical Shape Analysis A collection of applications that automate creation of an atlas of shapes, labelled with statistical significance (p-values).
>
>		 Renamer : renames a set of files to new file names , based on a list of names, and a transformation pattern.

Changed:
<
<		 DirectoryTool : Provides cross platform directory utilities useful in creating application protocols.
>
>		 Array IO Library - provides readers and writers of numerical arrays, stored in a variety of file formats.

<!--

Added:
>
>		 ContourTopologyChecker - Checks whether a contour is entirely contained on a surface manifold, or not.

ContourVolume: an application to calculate the volume outlined by a set of (Ucf) contours. Blend Surfaces combines a flattened map of a surface and it's dual into a Shape. FlatMapToolsLibrary: A Java library that simplifies maninpulation of shapes represented as a FlatMap.
Line: 62 to 62
These projects are being planned:
Deleted:
<
<		 Renamer : renames a set of files to new file names , based on a list of names, and a transformation pattern.

<!--
Deleted:
<
<		 ContourTopologyChecker - Checks whether a contour is entirely contained on a surface manifold, or not.

Deleted:
<
<		 Array IO Library - defines a numerical array file format and provides readers and writers of these files.

DelaunayTriangulation - Creates a Delauny triangulation of a surface.

Line: 85 to 79

Applications

Added:
>
>		 ArrayStatistics: calculates statistics for a set of numerical arrays.

ArrayToImage: creates an image from an array of numbers.

Convex Hull - A program to create convex hull of a given set of points.

Line: 177 to 173

rShape - An interface to ShapeTools from within the R statistics package. Allows R users to read and write ucf file data.

Added:
>
>

These projects are partially completed, but not under active development:

Automatic Statistical Shape Analysis A collection of applications that automate creation of an atlas of shapes, labelled with statistical significance (p-values).


<!--
These projects are being planned:
Line: 218 to 221

 -->

Coming Events

Changed:
<
<
>
>

Past Events

Changed:
<
<
>
>

File Formats


 <<O>>  Difference Topic ShapeToolLibraryProgram (r1.266 - 08 Feb 2008 - CraigSchwartz)

META TOPICPARENT CCBSIGS
Line: 46 to 46

 Automatic Statistical Shape Analysis A collection of applications that automate creation of an atlas of shapes, labelled with statistical significance (p-values).
Added:
>
>		 DirectoryTool : Provides cross platform directory utilities useful in creating application protocols.

<!--

ContourVolume: an application to calculate the volume outlined by a set of (Ucf) contours.


 <<O>>  Difference Topic ShapeToolLibraryProgram (r1.265 - 28 Jan 2008 - CraigSchwartz)

META TOPICPARENT CCBSIGS
Line: 49 to 49

 <!--

ContourVolume: an application to calculate the volume outlined by a set of (Ucf) contours.

Changed:
<
<		 Blend Surfaces? combines a flattened map of a surface and it's dual into a Shape.
>
>		 Blend Surfaces combines a flattened map of a surface and it's dual into a Shape.

FlatMapToolsLibrary: A Java library that simplifies maninpulation of shapes represented as a FlatMap. TopologicalContourAverager: Averages contours, accounting for a complex surface connectivity DecodeShape: Constructs a 3d shape surface from coordinates encocded as a pair of LONI UIF files.

 <<O>>  Difference Topic ShapeToolLibraryProgram (r1.264 - 24 Jan 2008 - CraigSchwartz)

META TOPICPARENT CCBSIGS
Line: 55 to 55

 DecodeShape: Constructs a 3d shape surface from coordinates encocded as a pair of LONI UIF files. EncodeShape: Encodes a 3d shape as pair of LONI UIF files. Blend Surface: combines the flattened map of a surface and it's dual mapping into a single flattened two dimensional mapped surface.
Added:
>
>		 InflateFlatmap - Maps a 2D, flattened surface, to either a sphere, or an icosahedron.

-->
These projects are being planned:

 <<O>>  Difference Topic ShapeToolLibraryProgram (r1.263 - 23 Jan 2008 - CraigSchwartz)

META TOPICPARENT CCBSIGS
Line: 59 to 59
These projects are being planned:
Changed:
<
<		 *Renamer : renames a set of files to new file names , based on a list of names, and a transformation pattern.
>
>		 Renamer : renames a set of files to new file names , based on a list of names, and a transformation pattern.

<!-- ContourTopologyChecker - Checks whether a contour is entirely contained on a surface manifold, or not.


 <<O>>  Difference Topic ShapeToolLibraryProgram (r1.262 - 18 Jan 2008 - CraigSchwartz)

META TOPICPARENT CCBSIGS
Line: 54 to 54

 TopologicalContourAverager: Averages contours, accounting for a complex surface connectivity DecodeShape: Constructs a 3d shape surface from coordinates encocded as a pair of LONI UIF files. EncodeShape: Encodes a 3d shape as pair of LONI UIF files.
Changed:
<
<		 Blend Surface?: combines the flattened map of a surface and it's dual mapping into a single flattened two dimensional mapped surface.
>
>		 Blend Surface: combines the flattened map of a surface and it's dual mapping into a single flattened two dimensional mapped surface.

-->
These projects are being planned:

 <<O>>  Difference Topic ShapeToolLibraryProgram (r1.261 - 17 Jan 2008 - CraigSchwartz)

META TOPICPARENT CCBSIGS
Line: 53 to 54

 TopologicalContourAverager: Averages contours, accounting for a complex surface connectivity DecodeShape: Constructs a 3d shape surface from coordinates encocded as a pair of LONI UIF files. EncodeShape: Encodes a 3d shape as pair of LONI UIF files.
Changed:
<
<
>
>		 Blend Surface?: combines the flattened map of a surface and it's dual mapping into a single flattened two dimensional mapped surface.

-->
These projects are being planned:

 <<O>>  Difference Topic ShapeToolLibraryProgram (r1.260 - 10 Jan 2008 - CraigSchwartz)

META TOPICPARENT CCBSIGS
Line: 58 to 58
These projects are being planned:
Added:
>
>		 *Renamer : renames a set of files to new file names , based on a list of names, and a transformation pattern.

<!--


 <<O>>  Difference Topic ShapeToolLibraryProgram (r1.259 - 19 Dec 2007 - CraigSchwartz)

META TOPICPARENT CCBSIGS
Line: 108 to 108

Rigid Quaternion Transform - Calculates a rigid quaternion transform that maps one set of vertices onto another, given the correspondences between the two sets of vertices.

Added:
>
>		 Shape Attribute - Adds a scalar values to the vertices of a shape.

ShapeAverage - Averages a the coordinates and, optionally, per vertex attributes, of a population of shapes.

ShapeCurvature - A program that calculates and saves the curvature of a surface at its vertices (v1.1).

Line: 120 to 122

ShapeTransform - A program that applies an AIR transform or a user specified rotation to the coordinates of a Shape's vertices.

Added:
>
>		 TTest? - calculate independent and dependent T-Test on two populations of values, read from ascii text tables.

ShapeToDX - A program which translates a variety of Shape files into an OpenDX general format data file.

ShapeToObj : a Java application that triangulates an arbitrary surface and saves the triangulated surface as a Minc Obj polygon file.


 <<O>>  Difference Topic ShapeToolLibraryProgram (r1.258 - 14 Dec 2007 - RyanCabeen)

META TOPICPARENT CCBSIGS
Line: 141 to 141

 DXJava Library: A java library providing classes which assists reading and writing OpenDX general format data files.
Changed:
<
<		 Landmark Warp? : A Java library and set of applications for estimating transformations from landmarks.
>
>		 LandmarkWarpTools : A Java library and set of applications for estimating transformations from landmarks.

<!-- Multigrid PDE solver library - A java library for rapidly solving systems of partial differential equations.


 <<O>>  Difference Topic ShapeToolLibraryProgram (r1.257 - 11 Dec 2007 - CraigSchwartz)

META TOPICPARENT CCBSIGS
Line: 39 to 39

 ShapeTools Library: A java library providing support functions to applications developers (v.1.3).
Deleted:
<
<		 ContourVolume: an application to calculate the volume outlined by a set of (Ucf) contours.

DataReaderWriter Library?: A java library providing a consistent interface to a variety of data sources and sinks.
Line: 47 to 45

 Automatic Statistical Shape Analysis A collection of applications that automate creation of an atlas of shapes, labelled with statistical significance (p-values).
Deleted:
<
<

<!--
Added:
>
>		 ContourVolume: an application to calculate the volume outlined by a set of (Ucf) contours. Blend Surfaces? combines a flattened map of a surface and it's dual into a Shape.

FlatMapToolsLibrary: A Java library that simplifies maninpulation of shapes represented as a FlatMap. TopologicalContourAverager: Averages contours, accounting for a complex surface connectivity DecodeShape: Constructs a 3d shape surface from coordinates encocded as a pair of LONI UIF files.

 <<O>>  Difference Topic ShapeToolLibraryProgram (r1.256 - 29 Nov 2007 - CraigSchwartz)

META TOPICPARENT CCBSIGS
Line: 97 to 97

ImageToShape - A program to samples a 2d image from a 3D image volume, and creates a ShapeTools rectangular grid from the voxels so obtained, using an ImageJ plugin to read the image volume.

Changed:
<
<		 InterpolateContour - A program to interpolate the vertices and data attributes of contour files (_was InterpolateContour).
>
>		 InterpolateContour - A program to interpolate the vertices and data attributes of contour files (was InterpolateUcf?).

Map Contour - Maps a contour according to a transform defined by the corrospondences of the faces of two homologous shapes.


 <<O>>  Difference Topic ShapeToolLibraryProgram (r1.255 - 29 Nov 2007 - CraigSchwartz)

META TOPICPARENT CCBSIGS
Line: 148 to 148

 Multigrid PDE solver library - A java library for rapidly solving systems of partial differential equations. -->
Changed:
<
<		 LONI_Reader Library:
>
>		 LONI_Reader Library: A set of ImageJ plugins that decode LONI UIF, Ucf and Minc Contour OBJ files.

RegularDiscreteDataTools - a Java library that manages collections of regularly sampled data.

ShapeTools Library: A java library providing support functions to applications developers (v.1.2,v. 1.0).

Deleted:
<
<		 ShapeToolsData: A java library for reading data from a variety of input sources and writing data to a variety of output sources.

ShapeToolsImage Library: A java library that reads images.


 <<O>>  Difference Topic ShapeToolLibraryProgram (r1.254 - 29 Nov 2007 - CraigSchwartz)

META TOPICPARENT CCBSIGS
Line: 113 to 113

ShapeCurvature - A program that calculates and saves the curvature of a surface at its vertices (v1.1).

Changed:
<
<		 ShapeGroupDistance - This is an abstract class whose subclasses can calculate various distance between a reference shape and all other shapes.
>
>		 ShapeGroupDistance - Calculate the distances between a reference shape and a group of other shapes.

ShapeDistance - A program to measure the distance between the vertices of two (homologous) shapes.

Line: 192 to 192

 ShapeTools enable researchers to perform various data analysis protocols.
Added:
>
>		 <!--

Preview Releases

Line: 204 to 205

And a CCB Software Tool Summary

Added:
>
>

-->


Coming Events

Changed:
<
<		 (none are scheduled)
>
>

Changed:
<
<

Past Events

>
>

Past Events


Changed:
<
<
>
>

File Formats

Added:
>
>

Source Code

The Java language source code for any of our completed applications or libraries is available, on request. If you use our tools, or our source code, please acknowledge us in your software and publications. Send source code requests to Dr. Roger Woods.


META FILEATTACHMENT Shape_29_Mar_2005.jar attr="h" comment="Shape Tools library - 29 March 2005" date="1112200598" path="Shape_29_Mar_2005.jar" size="57760" user="craig" version="1.1"
META FILEATTACHMENT ShapeTools?_src_18_April_2005.jar attr="h" comment="Shape Tools library - 18 April 2005" date="1113869924" path="ShapeTools_src_18_April_2005.jar" size="65714" user="craig" version="1.1"

 <<O>>  Difference Topic ShapeToolLibraryProgram (r1.253 - 29 Nov 2007 - CraigSchwartz)

META TOPICPARENT CCBSIGS
Line: 144 to 144

Landmark Warp? : A Java library and set of applications for estimating transformations from landmarks.

Added:
>
>		 <!--

Multigrid PDE solver library - A java library for rapidly solving systems of partial differential equations.
Added:
>
>		 -->

LONI_Reader Library:

Added:
>
>		 RegularDiscreteDataTools - a Java library that manages collections of regularly sampled data.

ShapeTools Library: A java library providing support functions to applications developers (v.1.2,v. 1.0).

 <<O>>  Difference Topic ShapeToolLibraryProgram (r1.252 - 28 Nov 2007 - CraigSchwartz)

META TOPICPARENT CCBSIGS
Line: 31 to 31

 These projects are active:
Added:
>
>		 ArrayStatistics: calculates statistics for a set of numerical arrays.

Shape Viewer : An application program which uses Java3D to display shapes in a 3 dimensional viewer (v1.2).

Line: 77 to 78

 These projects have been completed:

Applications

Deleted:
<
<		 ArrayStatistics: calculates statistics for a set of numerical arrays.

ArrayToImage: creates an image from an array of numbers.

Line: 91 to 91

FDRShape - A program which calculates the FDR threshold of a Shape containing per-vertex attributes that are statistical p-values.

Deleted:
<
<		 GeodesicDistance? - This program finds the shortest distance on a surface connecting two vertices of that surface.

GeodesicPath - This program finds the shortest path on a surface connecting two vertices of that surface.

ImageJ Plugins - a collection of ImageJ plugin extensions that enable ImageJ to view selected LONI image and contour files.

Line: 141 to 139

Libraries

Added:
>
>		 DXJava Library: A java library providing classes which assists reading and writing OpenDX general format data files.

Landmark Warp? : A Java library and set of applications for estimating transformations from landmarks.

Multigrid PDE solver library - A java library for rapidly solving systems of partial differential equations.

Deleted:
<
<		 OpenDx Library: A java library providing classes which assist reading and writing OpenDX general format data files.

LONI_Reader Library:

ShapeTools Library:


 <<O>>  Difference Topic ShapeToolLibraryProgram (r1.251 - 28 Nov 2007 - BaecheolShin)

META TOPICPARENT CCBSIGS
Line: 91 to 91

FDRShape - A program which calculates the FDR threshold of a Shape containing per-vertex attributes that are statistical p-values.

Added:
>
>		 GeodesicDistance? - This program finds the shortest distance on a surface connecting two vertices of that surface.

GeodesicPath - This program finds the shortest path on a surface connecting two vertices of that surface.

ImageJ Plugins - a collection of ImageJ plugin extensions that enable ImageJ to view selected LONI image and contour files.

Line: 101 to 103

Map Contour - Maps a contour according to a transform defined by the corrospondences of the faces of two homologous shapes.

Changed:
<
<		 Medial Distance Calculator : a Java application that computes and stores the distance between the vertices of a shape , defined as a group of contours, and a line passing through the centers of each of the contours.
>
>		 Medial Distance Calculator - a Java application that computes and stores the distance between the vertices of a shape , defined as a group of contours, and a line passing through the centers of each of the contours.

ObjTranslation - A program to translate Minc Obj format files into OFF files.


RigidAtlas - Computes an atlas from a group of shapes, using the RigidQuaternionTransform to align the shapes to the atlas.

Line: 111 to 115

ShapeCurvature - A program that calculates and saves the curvature of a surface at its vertices (v1.1).

Added:
>
>		 ShapeGroupDistance - This is an abstract class whose subclasses can calculate various distance between a reference shape and all other shapes.

ShapeDistance - A program to measure the distance between the vertices of two (homologous) shapes.

Shape Statistics - calculate per-vertex statistics for a population of shapes.

Line: 142 to 148

 OpenDx Library: A java library providing classes which assist reading and writing OpenDX general format data files.
Added:
>
>		 LONI_Reader Library:

ShapeTools Library: A java library providing support functions to applications developers (v.1.2,v. 1.0).
Added:
>
>		 ShapeToolsData: A java library for reading data from a variety of input sources and writing data to a variety of output sources.

ShapeToolsImage Library: A java library that reads images.

Virtual File System Browser - a Java application component that uses sFtp and ssh to securely find and read files stored on remote computers.


 <<O>>  Difference Topic ShapeToolLibraryProgram (r1.250 - 28 Nov 2007 - CraigSchwartz)

META TOPICPARENT CCBSIGS
Line: 137 to 137

Landmark Warp? : A Java library and set of applications for estimating transformations from landmarks.

Changed:
<
<		 MultigridPDELibrary - A java library for rapidly solving systems of partial differential equations.
>
>		 Multigrid PDE solver library - A java library for rapidly solving systems of partial differential equations.

OpenDx Library: A java library providing classes which assist reading and writing OpenDX general format data files.


 <<O>>  Difference Topic ShapeToolLibraryProgram (r1.249 - 27 Nov 2007 - CraigSchwartz)

META TOPICPARENT CCBSIGS
Line: 43 to 43

 DataReaderWriter Library?: A java library providing a consistent interface to a variety of data sources and sinks.
Deleted:
<
<


Automatic Statistical Shape Analysis A collection of applications that automate creation of an atlas of shapes, labelled with statistical significance (p-values).
Deleted:
<
<		 ArrayToImage: creates an image from an array of numbers.

ArrayStatistics: calculates statistics for a set of numerical arrays.


<!--

Changed:
<
<		 MultigridPDELibrary: A Java library providing methods to solve systems of partial differential equations using multi-grid methods.
>
>

FlatMapToolsLibrary: A Java library that simplifies maninpulation of shapes represented as a FlatMap. TopologicalContourAverager: Averages contours, accounting for a complex surface connectivity
Deleted:
<
<		 -->

<!--


DecodeShape: Constructs a 3d shape surface from coordinates encocded as a pair of LONI UIF files. EncodeShape: Encodes a 3d shape as pair of LONI UIF files.
Line: 76 to 68

 DelaunayTriangulation - Creates a Delauny triangulation of a surface. -->
Deleted:
<
<		 MultigridPDELibrary - A java library for rapidly solving systems of partial differential equations.

<!-- Elastic Warp - Warps images using an elastic warp.

Line: 86 to 77

 These projects have been completed:

Applications

Added:
>
>		 ArrayStatistics: calculates statistics for a set of numerical arrays.

ArrayToImage: creates an image from an array of numbers.


Convex Hull - A program to create convex hull of a given set of points.

Line: 143 to 137

Landmark Warp? : A Java library and set of applications for estimating transformations from landmarks.

Added:
>
>		 MultigridPDELibrary - A java library for rapidly solving systems of partial differential equations.

OpenDx Library: A java library providing classes which assist reading and writing OpenDX general format data files.

 <<O>>  Difference Topic ShapeToolLibraryProgram (r1.248 - 27 Nov 2007 - CraigSchwartz)

META TOPICPARENT CCBSIGS
Line: 105 to 105

InterpolateContour - A program to interpolate the vertices and data attributes of contour files (_was InterpolateContour).

Deleted:
<
<		 Landmark Warp? : A Java library and set of applications for estimating transformations from landmarks.

Map Contour - Maps a contour according to a transform defined by the corrospondences of the faces of two homologous shapes.

Medial Distance Calculator : a Java application that computes and stores the distance between the vertices of a shape , defined as a group of contours, and a line passing through the centers of each of the contours.

Line: 143 to 141

Libraries

Added:
>
>		 Landmark Warp? : A Java library and set of applications for estimating transformations from landmarks.

OpenDx Library: A java library providing classes which assist reading and writing OpenDX general format data files.

 <<O>>  Difference Topic ShapeToolLibraryProgram (r1.247 - 26 Nov 2007 - CraigSchwartz)

META TOPICPARENT CCBSIGS
Line: 204 to 204
Added:
>
>

File Formats


 <<O>>  Difference Topic ShapeToolLibraryProgram (r1.246 - 22 Nov 2007 - CraigSchwartz)

META TOPICPARENT CCBSIGS
Line: 99 to 99

GeodesicPath - This program finds the shortest path on a surface connecting two vertices of that surface.

Changed:
<
<		 ImageJ Plugins - a collection of ImageJ plugin extensions that enable ImageJ? to view selected LONI image and contour files.
>
>		 ImageJ Plugins - a collection of ImageJ plugin extensions that enable ImageJ to view selected LONI image and contour files.

ImageToShape - A program to samples a 2d image from a 3D image volume, and creates a ShapeTools rectangular grid from the voxels so obtained, using an ImageJ plugin to read the image volume.

Line: 123 to 123

Shape Statistics - calculate per-vertex statistics for a population of shapes.

Changed:
<
<		 ShapeTransform - A program that applies an AIR transform to the coordinates of a Shape's vertices.
>
>		 ShapeTransform - A program that applies an AIR transform or a user specified rotation to the coordinates of a Shape's vertices.

ShapeToDX - A program which translates a variety of Shape files into an OpenDX general format data file.


 <<O>>  Difference Topic ShapeToolLibraryProgram (r1.245 - 21 Nov 2007 - CraigSchwartz)

META TOPICPARENT CCBSIGS
Line: 51 to 51

ArrayStatistics: calculates statistics for a set of numerical arrays.

Changed:
<
<		 Vertex Selector: selects vertices from a ahspe, based on user specified criteria.
>
>

<!-- MultigridPDELibrary: A Java library providing methods to solve systems of partial differential equations using multi-grid methods. FlatMapToolsLibrary: A Java library that simplifies maninpulation of shapes represented as a FlatMap.
Line: 139 to 139

UcfReorder - A program to correct common flaws in hippocampal contours stored as a Loni UCF.

Added:
>
>		 Vertex Selector: selects vertices from a shape, based on user specified criteria.

Libraries


 <<O>>  Difference Topic ShapeToolLibraryProgram (r1.244 - 21 Nov 2007 - CraigSchwartz)

META TOPICPARENT CCBSIGS
Line: 51 to 51

ArrayStatistics: calculates statistics for a set of numerical arrays.

Added:
>
>		 Vertex Selector: selects vertices from a ahspe, based on user specified criteria.

<!-- MultigridPDELibrary: A Java library providing methods to solve systems of partial differential equations using multi-grid methods. FlatMapToolsLibrary: A Java library that simplifies maninpulation of shapes represented as a FlatMap.

 <<O>>  Difference Topic ShapeToolLibraryProgram (r1.243 - 06 Nov 2007 - CraigSchwartz)

META TOPICPARENT CCBSIGS
Line: 66 to 66

 These projects are being planned:
Deleted:
<
<		 Map Contour - Maps a contour according to a transform defined by the corrospondences of the faces of two homologous shapes.

Deleted:
<
<		 Array IO Library - defines a numerical array file format and provides readers and writers of these files.

<!--
Added:
>
>		 ContourTopologyChecker - Checks whether a contour is entirely contained on a surface manifold, or not.

Array IO Library - defines a numerical array file format and provides readers and writers of these files.


DelaunayTriangulation - Creates a Delauny triangulation of a surface. -->
Line: 96 to 98

GeodesicPath - This program finds the shortest path on a surface connecting two vertices of that surface.

Changed:
<
<		 ImageJ Plugins - a collection of ImageJ? plugin extensions that enable ImageJ? to view selected LONI image and contour files.
>
>		 Ima