(r1.1 vs. r1.46) SigFlow < CCB

CCB.SigFlow (r1.1 vs. r1.46)

Diffs

<<O>> Difference Topic SigFlow (r1.46 - 19 Nov 2009 - IvoDinov)

META TOPICPARENT	CCBSIGS

CCB Special Interest Group on Automated Pipeline Workflows for Neuroimaging Data Analysis

Line: 39 to 39

Others

Progress & Status

Added:

>
>

11/24/09

<<O>> Difference Topic SigFlow (r1.45 - 17 Nov 2009 - IvoDinov)

META TOPICPARENT	CCBSIGS

CCB Special Interest Group on Automated Pipeline Workflows for Neuroimaging Data Analysis

Line: 39 to 39

Others

Progress & Status

Added:

>
>

11/19/09

<<O>> Difference Topic SigFlow (r1.44 - 13 Nov 2009 - IvoDinov)

META TOPICPARENT	CCBSIGS

CCB Special Interest Group on Automated Pipeline Workflows for Neuroimaging Data Analysis

Line: 39 to 39

Others

Progress & Status

Added:

>
>

11/17/09

<<O>> Difference Topic SigFlow (r1.43 - 11 Nov 2009 - IvoDinov)

META TOPICPARENT	CCBSIGS

CCB Special Interest Group on Automated Pipeline Workflows for Neuroimaging Data Analysis

Line: 39 to 39

Others

Progress & Status

Added:

>
>

11/12/09

<<O>> Difference Topic SigFlow (r1.42 - 05 Nov 2009 - IvoDinov)

META TOPICPARENT	CCBSIGS

CCB Special Interest Group on Automated Pipeline Workflows for Neuroimaging Data Analysis

Line: 39 to 39

Others

Progress & Status

Added:

>
>

11/10/09

<<O>> Difference Topic SigFlow (r1.41 - 05 Nov 2009 - IvoDinov)

META TOPICPARENT	CCBSIGS

CCB Special Interest Group on Automated Pipeline Workflows for Neuroimaging Data Analysis

Line: 6 to 6

SIG Home
CCB SIG Meeting Calendar
CCB SIGFlow site Inside CCB (password protected)

Changed:

<
<

LONI Pipeline page

>
>

LONI Pipeline page
Complete Pipeline Workflows

TOC: No TOC in "CCB.SigFlow"

<<O>> Difference Topic SigFlow (r1.40 - 03 Nov 2009 - IvoDinov)

META TOPICPARENT	CCBSIGS

CCB Special Interest Group on Automated Pipeline Workflows for Neuroimaging Data Analysis

Line: 23 to 23

Meeting Data/Time/Place

The SIG-FLOW group meeting is meeting Tue/Thu, 11:00AM in T-Room

Changed:

<
<

Currently Discussed Pipeline Workflows

>
>

Currently Discussed Pipeline Workflows

Minimum Distance Template (MDT), Atlasing
Tensor Based Morphometry (TBM), Cal Tech
Stats Tools Modules

<<O>> Difference Topic SigFlow (r1.39 - 03 Nov 2009 - IvoDinov)

META TOPICPARENT	CCBSIGS

CCB Special Interest Group on Automated Pipeline Workflows for Neuroimaging Data Analysis

Line: 38 to 38

Others

Progress & Status

Changed:

<
<

11/02/09

>
>

Line: 83 to 84

* Production(Server:Cranium-Prod) * Try-Me (contact Amanda) * Training (Server:Cranium-edu)

Changed:

<
<

PIPELINE GRP: Add workflow to Pipeline distro.

>
>

Module/Workflow Wiki page (docs and usage).
PIPELINE Group: Add workflow to Pipeline distribution.

LONI Grid Server Matrix

<<O>> Difference Topic SigFlow (r1.38 - 29 Oct 2009 - IvoDinov)

META TOPICPARENT	CCBSIGS

CCB Special Interest Group on Automated Pipeline Workflows for Neuroimaging Data Analysis

Line: 38 to 38

Others

Progress & Status

Added:

>
>

<<O>> Difference Topic SigFlow (r1.37 - 22 Oct 2009 - IvoDinov)

META TOPICPARENT	CCBSIGS

CCB Special Interest Group on Automated Pipeline Workflows for Neuroimaging Data Analysis

Line: 38 to 38

Others

Progress & Status

Added:

>
>

10/27/09

<<O>> Difference Topic SigFlow (r1.36 - 20 Oct 2009 - IvoDinov)

META TOPICPARENT	CCBSIGS

CCB Special Interest Group on Automated Pipeline Workflows for Neuroimaging Data Analysis

Line: 38 to 38

Others

Progress & Status

Added:

>
>

10/22/09

<<O>> Difference Topic SigFlow (r1.35 - 15 Oct 2009 - IvoDinov)

META TOPICPARENT	CCBSIGS

CCB Special Interest Group on Automated Pipeline Workflows for Neuroimaging Data Analysis

Line: 38 to 38

Others

Progress & Status

Added:

>
>

10/20/09

<<O>> Difference Topic SigFlow (r1.34 - 14 Oct 2009 - IvoDinov)

META TOPICPARENT	CCBSIGS

CCB Special Interest Group on Automated Pipeline Workflows for Neuroimaging Data Analysis

Line: 38 to 38

Others

Progress & Status

Added:

>
>

10/15/09

<<O>> Difference Topic SigFlow (r1.33 - 06 Oct 2009 - IvoDinov)

META TOPICPARENT	CCBSIGS

CCB Special Interest Group on Automated Pipeline Workflows for Neuroimaging Data Analysis

Line: 38 to 38

Others

Progress & Status

Added:

>
>

10/13/09

<<O>> Difference Topic SigFlow (r1.32 - 02 Oct 2009 - IvoDinov)

META TOPICPARENT	CCBSIGS

CCB Special Interest Group on Automated Pipeline Workflows for Neuroimaging Data Analysis

Line: 38 to 38

Others

Progress & Status

Added:

>
>

10/06/09

<<O>> Difference Topic SigFlow (r1.31 - 29 Sep 2009 - IvoDinov)

META TOPICPARENT	CCBSIGS

CCB Special Interest Group on Automated Pipeline Workflows for Neuroimaging Data Analysis

Line: 38 to 38

Others

Progress & Status

Added:

>
>

10/01/09

<<O>> Difference Topic SigFlow (r1.30 - 28 Sep 2009 - IvoDinov)

META TOPICPARENT	CCBSIGS

CCB Special Interest Group on Automated Pipeline Workflows for Neuroimaging Data Analysis

Line: 38 to 38

Others

Progress & Status

Added:

>
>

09/29/09

<<O>> Difference Topic SigFlow (r1.29 - 23 Sep 2009 - IvoDinov)

META TOPICPARENT	CCBSIGS

CCB Special Interest Group on Automated Pipeline Workflows for Neuroimaging Data Analysis

Line: 38 to 38

Others

Progress & Status

Added:

>
>

09/24/09

<<O>> Difference Topic SigFlow (r1.28 - 17 Sep 2009 - IvoDinov)

META TOPICPARENT	CCBSIGS

CCB Special Interest Group on Automated Pipeline Workflows for Neuroimaging Data Analysis

Line: 38 to 38

Others

Progress & Status

Added:

>
>

09/22/09

<<O>> Difference Topic SigFlow (r1.27 - 15 Sep 2009 - IvoDinov)

META TOPICPARENT	CCBSIGS

CCB Special Interest Group on Automated Pipeline Workflows for Neuroimaging Data Analysis

Line: 38 to 38

Others

Progress & Status

Added:

>
>

09/17/09

<<O>> Difference Topic SigFlow (r1.26 - 15 Sep 2009 - IvoDinov)

META TOPICPARENT	CCBSIGS

CCB Special Interest Group on Automated Pipeline Workflows for Neuroimaging Data Analysis

Line: 38 to 38

Others

Progress & Status

Added:

>
>

09/15/09

<<O>> Difference Topic SigFlow (r1.25 - 10 Sep 2009 - IvoDinov)

META TOPICPARENT	CCBSIGS

CCB Special Interest Group on Automated Pipeline Workflows for Neuroimaging Data Analysis

Line: 38 to 38

Others

Progress & Status

Added:

>
>

09/10/09

<<O>> Difference Topic SigFlow (r1.24 - 27 Aug 2009 - ShruthiChakrapani)

META TOPICPARENT	CCBSIGS

CCB Special Interest Group on Automated Pipeline Workflows for Neuroimaging Data Analysis

Line: 38 to 38

Others

Progress & Status

Added:

>
>

08/27/09

<<O>> Difference Topic SigFlow (r1.23 - 20 Aug 2009 - IvoDinov)

META TOPICPARENT	CCBSIGS

CCB Special Interest Group on Automated Pipeline Workflows for Neuroimaging Data Analysis

Line: 38 to 38

Others

Progress & Status

Added:

>
>

08/25/09

<<O>> Difference Topic SigFlow (r1.22 - 18 Aug 2009 - IvoDinov)

META TOPICPARENT	CCBSIGS

CCB Special Interest Group on Automated Pipeline Workflows for Neuroimaging Data Analysis

Line: 38 to 38

Others

Progress & Status

Added:

>
>

08/20/09

<<O>> Difference Topic SigFlow (r1.21 - 14 Aug 2009 - IvoDinov)

META TOPICPARENT	CCBSIGS

CCB Special Interest Group on Automated Pipeline Workflows for Neuroimaging Data Analysis

Line: 38 to 38

Others

Progress & Status

Added:

>
>

08/18/09

<<O>> Difference Topic SigFlow (r1.20 - 08 Aug 2009 - IvoDinov)

META TOPICPARENT	CCBSIGS

CCB Special Interest Group on Automated Pipeline Workflows for Neuroimaging Data Analysis

Line: 38 to 38

Others

Progress & Status

Added:

>
>

08/11/09

<<O>> Difference Topic SigFlow (r1.19 - 05 Aug 2009 - IvoDinov)

META TOPICPARENT	CCBSIGS

CCB Special Interest Group on Automated Pipeline Workflows for Neuroimaging Data Analysis

Line: 38 to 38

Others

Progress & Status

Added:

>
>

08/06/09

<<O>> Difference Topic SigFlow (r1.18 - 29 Jul 2009 - IvoDinov)

META TOPICPARENT	CCBSIGS

CCB Special Interest Group on Automated Pipeline Workflows for Neuroimaging Data Analysis

Line: 38 to 38

Others

Progress & Status

Added:

>
>

07/30/09

<<O>> Difference Topic SigFlow (r1.17 - 24 Jul 2009 - IvoDinov)

META TOPICPARENT	CCBSIGS

CCB Special Interest Group on Automated Pipeline Workflows for Neuroimaging Data Analysis

Line: 38 to 38

Others

Progress & Status

Added:

>
>

07/28/09

<<O>> Difference Topic SigFlow (r1.16 - 22 Jul 2009 - IvoDinov)

META TOPICPARENT	CCBSIGS

CCB Special Interest Group on Automated Pipeline Workflows for Neuroimaging Data Analysis

Line: 38 to 38

Others

Progress & Status

Added:

>
>

07/23/09

<<O>> Difference Topic SigFlow (r1.15 - 17 Jul 2009 - IvoDinov)

META TOPICPARENT	CCBSIGS

CCB Special Interest Group on Automated Pipeline Workflows for Neuroimaging Data Analysis

Line: 38 to 38

Others

Progress & Status

Added:

>
>

07/21/09

<<O>> Difference Topic SigFlow (r1.14 - 14 Jul 2009 - IvoDinov)

META TOPICPARENT	CCBSIGS

CCB Special Interest Group on Automated Pipeline Workflows for Neuroimaging Data Analysis

Line: 38 to 38

Others

Progress & Status

Added:

>
>

07/16/09

<<O>> Difference Topic SigFlow (r1.13 - 10 Jul 2009 - IvoDinov)

META TOPICPARENT	CCBSIGS

CCB Special Interest Group on Automated Pipeline Workflows for Neuroimaging Data Analysis

Line: 38 to 38

Others

Progress & Status

Added:

>
>

07/14/09

<<O>> Difference Topic SigFlow (r1.12 - 07 Jul 2009 - IvoDinov)

META TOPICPARENT	CCBSIGS

CCB Special Interest Group on Automated Pipeline Workflows for Neuroimaging Data Analysis

Line: 38 to 38

Others

Progress & Status

Added:

>
>

07/09/09

<<O>> Difference Topic SigFlow (r1.11 - 07 Jul 2009 - IvoDinov)

META TOPICPARENT	CCBSIGS

CCB Special Interest Group on Automated Pipeline Workflows for Neuroimaging Data Analysis

Line: 57 to 57

* Training (Server:Cranium-edu)

PIPELINE GRP: Add workflow to Pipeline distro.

Changed:

<
<

Committing Binary executable to /usr/local

>
>

LONI Grid Server Matrix

Hostname	Alias	CPU/Slot Count	Status	Ownership
pipeline‐lsh1.loni.ucla.edu	try-me	8	production	sysadmin & pipeline
cerebro‐lsh1.loni.ucla.edu	pipeline-dev	16	development	pipeline
cerebro‐lsh2.loni.ucla.edu	cranium primary	590	production	sysadmin & pipeline
cerebro‐lsh3.loni.ucla.edu	cranium secondary	590	production	sysadmin & pipeline
cerebro‐lsh5.loni.ucla.edu	pipeline-qa	192	development/qa	pipeline
cerebro‐lsh6.loni.ucla.edu	pipeline-ext	50	production	sysadmin & pipeline

META TOPICMOVED	MichaelJPan^?	date="1134062952" from="CCB.PipelineFlow" to="CCB.SigFlow"

<<O>> Difference Topic SigFlow (r1.10 - 07 Jul 2009 - ShruthiChakrapani)

META TOPICPARENT	CCBSIGS

CCB Special Interest Group on Automated Pipeline Workflows for Neuroimaging Data Analysis

Line: 45 to 45

The following 2 protocols should be followed to commit tools/libraries and pipeline workflows to production.

Committing Pipeline Workflows to core Pipeline server library

Changed:

<
<

Confirm that source code is in LONI SVN repo and validate application build.
Test the stand-alone application on known good datasets. Validate results.
Install application in /usr/local of cerebro-rcc and Cranium cluster.
Integrate the application into a Pipeline workflow. Test on development cluster and validate results.
Test on production cluster and validate results.
Deploy workflow on a) development, b)production, c) Try-Me and d) pipeline-lsh6 pipeline servers.
Add workflow to Pipeline distro.

>
>

IVO DINOV: Confirm that source code is in LONI SVN repo and validate application build.
ALEN/SHRUTHI: Test the stand-alone application on known good datasets. Validate results.
SYS ADMINS: Install application in /usr/local of cerebro-rcc and Cranium cluster.
ALEN/SHRUTHI: Integrate the application into a Pipeline workflow. Test on development cluster and validate results.
ALEN/SHRUTHI: Test on production cluster and validate results.
ALEN/SHRUTHI:Deploy workflow on * Development (Server:Cranium-Dev) * Production(Server:Cranium-Prod) * Try-Me (contact Amanda) * Training (Server:Cranium-edu)
PIPELINE GRP: Add workflow to Pipeline distro.

Committing Binary executable to /usr/local

<<O>> Difference Topic SigFlow (r1.9 - 07 Jul 2009 - IvoDinov)

META TOPICPARENT	CCBSIGS

CCB Special Interest Group on Automated Pipeline Workflows for Neuroimaging Data Analysis

Line: 41 to 41

Added:

>
>

Protocols for committing Pipeline Libraries and Workflows to production

The following 2 protocols should be followed to commit tools/libraries and pipeline workflows to production.

Committing Pipeline Workflows to core Pipeline server library

Confirm that source code is in LONI SVN repo and validate application build.
Test the stand-alone application on known good datasets. Validate results.
Install application in /usr/local of cerebro-rcc and Cranium cluster.
Integrate the application into a Pipeline workflow. Test on development cluster and validate results.
Test on production cluster and validate results.
Deploy workflow on a) development, b)production, c) Try-Me and d) pipeline-lsh6 pipeline servers.
Add workflow to Pipeline distro.

Committing Binary executable to /usr/local

META TOPICMOVED	MichaelJPan^?	date="1134062952" from="CCB.PipelineFlow" to="CCB.SigFlow"

<<O>> Difference Topic SigFlow (r1.8 - 06 Jul 2009 - IvoDinov)

META TOPICPARENT	CCBSIGS

CCB Special Interest Group on Automated Pipeline Workflows for Neuroimaging Data Analysis

Line: 38 to 38

Others

Progress & Status

Added:

>
>

07/07/09

06/30/09

META TOPICMOVED	MichaelJPan^?	date="1134062952" from="CCB.PipelineFlow" to="CCB.SigFlow"

<<O>> Difference Topic SigFlow (r1.7 - 30 Jun 2009 - IvoDinov)

META TOPICPARENT	CCBSIGS

CCB Special Interest Group on Automated Pipeline Workflows for Neuroimaging Data Analysis

SIG Home

Changed:

<
<

SIG Meeting Schedule: Winter'06 CCB SIG Meeting Calendar

>
>

CCB SIG Meeting Calendar

CCB SIGFlow site Inside CCB (password protected)
LONI Pipeline page

Line: 34 to 33

ShapeTools^? Modules/Pipelines
fMRI/FEAT
Local Shape Analysis (LSA)

Added:

>
>

Automated 56 ROI volume extraction workflow
Direct Hippo Mapping (DHM, Yonggang) workflow

Others

Added:

>
>

Progress & Status

06/30/09

META TOPICMOVED	MichaelJPan^?	date="1134062952" from="CCB.PipelineFlow" to="CCB.SigFlow"

<<O>> Difference Topic SigFlow (r1.6 - 26 Jun 2009 - IvoDinov)

  META TOPICPARENT  CCBSIGS
-<
<
+  CCB Special Interest Group on Workflows for Data Analysis
->
>
+  CCB Special Interest Group on Automated Pipeline Workflows for Neuroimaging Data Analysis
 SIG Home

SIG Meeting Schedule: Winter'06 CCB SIG Meeting Calendar
->
>
+CCB SIGFlow site Inside CCB (password protected)

LONI Pipeline page
-<
<
+CCB SIGFlow site Inside CCB (password protected)
->
>
+TOC: No TOC in "CCB.SigFlow"
-<
<
+LONI Pipeline Wiki
->
>
+  Overview 
The SIG-FLOW group meets regularly to address challenges and report progress on the Design, Revisions, Validation and Dissemination of old and new Pipeline workflows.
-<
<
+  Calendar of Events 


 SIGFlow research meeting

 Every other Friday, starting 13 January 2005



 Pipeline User Training Workshop

 Every other Friday, starting 6 January 2005
->
>
+  Members 

 AlenZamanyan

 ShruthiChakrapani

 IvoDinov

 Other Pipeline Developers



  Meeting Data/Time/Place  

 The SIG-FLOW group meeting is meeting Tue/Thu, 11:00AM in T-Room




  Currently Discussed Pipeline Workflows 

 Minimum Distance Template (MDT), Atlasing

 Tensor Based Morphometry (TBM), Cal Tech

 Stats Tools Modules

 Datasets and Atlases

 Auto Tissue Volume Workflow (auto calculation of total WM GM ICV volumes)

 Global Shape Analysis (GSA)

 ShapeTools^? Modules/Pipelines

 fMRI/FEAT

 Local Shape Analysis (LSA)

 Others
  META TOPICMOVED  MichaelJPan^?  date="1134062952" from="CCB.PipelineFlow" to="CCB.SigFlow"
- META TOPICMOVED
+ date="1134062952" from="CCB.PipelineFlow" to="CCB.SigFlow"

<<O>> Difference Topic SigFlow (r1.5 - 24 Aug 2006 - LindaCapetilloCunliffe)

META TOPICPARENT	CCBSIGS

CCB Special Interest Group on Workflows for Data Analysis

<<O>> Difference Topic SigFlow (r1.4 - 16 Dec 2005 - Main.ccb)

Changed:

<
<

META TOPICPARENT	CcbGroups

>
>

META TOPICPARENT	CCBSIGS

CCB Special Interest Group on Workflows for Data Analysis

Added:

>
>

SIG Home
SIG Meeting Schedule: Winter'06 CCB SIG Meeting Calendar

<<O>> Difference Topic SigFlow (r1.3 - 16 Dec 2005 - Main.ccb)

META TOPICPARENT	CcbGroups

CCB Special Interest Group on Workflows for Data Analysis

Added:

>
>

SIG Home
SIG Meeting Schedule: Winter'06 CCB SIG Meeting Calendar

CCB SIGFlow site Inside CCB (password protected)

LONI Pipeline Wiki

<<O>> Difference Topic SigFlow (r1.2 - 08 Dec 2005 - MichaelJPan)

META TOPICPARENT	CcbGroups

Changed:

<
<

CCB Special Interest Group on Graphical Flow Data Analysis (SIG-FLOW)

CCB SIG-SEG site Inside CCB (password protected)

>
>

CCB Special Interest Group on Workflows for Data Analysis

CCB SIGFlow site Inside CCB (password protected)

Changed:

<
<

Processing Flow (Pipeline)

>
>

LONI Pipeline Wiki

Added:

>
>

Calendar of Events

SIGFlow research meeting
- Every other Friday, starting 13 January 2005
Pipeline User Training Workshop
- Every other Friday, starting 6 January 2005

META TOPICMOVED	MichaelJPan^?	date="1134062952" from="CCB.PipelineFlow" to="CCB.SigFlow"

<<O>> Difference Topic SigFlow (r1.1 - 25 Nov 2005 - Main.ccb)

Line: 1 to 1

Added:

>
>

META TOPICPARENT	CcbGroups

CCB Special Interest Group on Graphical Flow Data Analysis (SIG-FLOW)

CCB SIG-SEG site Inside CCB (password protected)

Processing Flow (Pipeline)

Topic: SigFlow . { View | Diffs | r1.46 | > | r1.45 | > | r1.44 | More }

Revision r1.1 - 25 Nov 2005 - 23:44 - Main.ccb
Revision r1.46 - 19 Nov 2009 - 19:06 - IvoDinov