MouseBIRN.AtlasStateExchange_2007 (r1.10 vs. r1.11)
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 <<O>>  Difference Topic AtlasStateExchange_2007 (r1.11 - 02 Mar 2007 - JylBoline)

META TOPICPARENT MouseBIRNAtlasing
See The original page where exchange of Atlas State was started
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Work resumed at the end of 2006 with a focus on setting up an Atlas Server that can be used in conjunction with the API for atlas exchange. This outlines the step by step plans of the group.

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Overview:

Work resumed at the end of 2006 with a focus on setting up an Atlas Server that can be used in conjunction with the API for atlas exchange. This outlines the step by step plans of the group.

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Synopsis of intitial work plans from a meeting 1/14/07 between Willy, and UCLA:
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Synopsis of intitial work plans:
Meeting 1/14/07 between Willy, and UCLA:

  • Immediate:
    • Willy will give Allan the origin and define the coordinates of SA in relation to the mouse looking at you
    • Allan will generate the transformations between the atlases and give Willy a transformation for a single Paxinos slice on Tuesday
Line: 14 to 16
    • Willy will give Steve the source code for testing access to the server
    • Steve and Heng will begin testing the atlas web-services API sent by Willy and Willy will send basic documentation and a test application for accessing this service
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Synopsis of follow up meeting 1/18/07 between Willy, Drexel, and UCLA:
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Synopsis of follow up meeting 1/18/07:
Willy, Drexel, and UCLA:

  • There was still some confusion about the coordinates used by the three systems, so to clarify, we went through them all together:
    • Confirmed that all three systems have the brain situated in the coordinate frame in pretty much the same manner (NT Y coordinate may be 5 at Bregma, but it still increases going down into the brain)
    • It’s a little unclear if the coronal planes used in SmartAtlas? are with the animal facing towards us or away from us, but it probably shouldn’t make too much of a difference for how we’ll likely handle the interactions
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Webservice created by Willy Wong for transformations:
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Webservice for transformations:
Created by Willy Wong


Topic: AtlasStateExchange_2007 . { View | Diffs | r1.12 | > | r1.11 | > | r1.10 | More }

Revision r1.10 - 01 Mar 2007 - 19:30 - JylBoline
Revision r1.11 - 02 Mar 2007 - 02:42 - JylBoline