MouseBIRN.HIDforAIDB (r1.1 vs. r1.8)
Diffs

 <<O>>  Difference Topic HIDforAIDB (r1.8 - 06 Mar 2008 - QueenieNg)

META TOPICPARENT MouseBIRNDataFederation

Modification of HID for AIDB

The Mouse BIRN group works with many types of images and deals with multiple data sources. Many of the groups work with 3D volumes (mostly MR volumes). These may be raw or processed data, including atlases (which contain several types of information associated with anatomy). Our goal with this work is for the AIDB to be one of the primary Mouse BIRN publicly accessible data sources for users to upload and expose their data using tools created by the FBIRN group that are modified to fit our needs.
Line: 7 to 7
  • Mouse BIRN source databases (clone relevant parts of their DB)
  • Any external users to access through simple user interfaces
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How to upload data to AIDB?


Information on HID


 <<O>>  Difference Topic HIDforAIDB (r1.7 - 04 Feb 2008 - JylBoline)

META TOPICPARENT MouseBIRNDataFederation

Modification of HID for AIDB

The Mouse BIRN group works with many types of images and deals with multiple data sources. Many of the groups work with 3D volumes (mostly MR volumes). These may be raw or processed data, including atlases (which contain several types of information associated with anatomy). Our goal with this work is for the AIDB to be one of the primary Mouse BIRN publicly accessible data sources for users to upload and expose their data using tools created by the FBIRN group that are modified to fit our needs.
Line: 41 to 41
    • Due to meetings and other deadlines, no progress on uploading to AIDB yet, meet again this month

  • 11/19/07: met with Jeff B, Dingying, Allan, and Jyl: meeting minutes. All groups will try to upload a single dataset and meet next Tuesday 27th 10 AM to discuss any problems.
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  • 12/11/07: Allan has been able to set up a project on the AIDB, but he's having problems uploading data. Jeff B has set up a project on the portal and is working on modifying the project XML file.

  • 1/29/07: Allan is still having problems with the Path and hasn't been able to upload data yet. Jeff B ran into several issues while trying to run the installation and has started working on the Subject XML (he will look at Allan's examples on this wiki to see if those help). Queenie will put together some documentation that's specific for Mouse BIRN to help us through this process.

META FILEATTACHMENT HIDmeeting9_25_07.doc attr="" comment="Minutes from the joint meeting 9/25/07" date="1191006701" path="HID meeting 9_25_07.doc" size="79360" user="jboline" version="1.1"
META FILEATTACHMENT HIDUserWorkflow?.doc attr="" comment="General Workflow used by FBIRN and specifics of EAE example from Allan" date="1191006827" path="HID User Workflow.doc" size="72704" user="jboline" version="1.1"
META FILEATTACHMENT EAE_ProjectSetup.xml attr="" comment="Project Setup Example XML from EAE experiment" date="1191007057" path="EAE_ProjectSetup.xml" size="3372" user="jboline" version="1.1"
META FILEATTACHMENT EAE_Visit.xml attr="" comment="Visit/Subject Example XML from EAE experiment" date="1191007102" path="EAE_Visit.xml" size="3694" user="jboline" version="1.1"
META FILEATTACHMENT Mouse_XML_Upload.zip attr="" comment="simple JAVA gui for creating project and subject XML files" date="1195171466" path="Mouse_XML_Upload.zip" size="103472" user="jboline" version="1.1"
META FILEATTACHMENT AIDBmeeting11_19_07.doc attr="" comment="meeting minutes" date="1195518480" path="AIDB meeting 11_19_07.doc" size="45056" user="jboline" version="1.1"
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META FILEATTACHMENT AIDBmeeting12_11_07.doc attr="" comment="Minutes from the joint meeting 12/11/07" date="1202157700" path="AIDB meeting 12_11_07.doc" size="53248" user="jboline" version="1.1"
META FILEATTACHMENT AIDBmeeting1_29_08.doc attr="" comment="Minutes from the joint meeting 1/29/08" date="1202157978" path="AIDB meeting 1_29_08.doc" size="48640" user="jboline" version="1.1"

 <<O>>  Difference Topic HIDforAIDB (r1.6 - 29 Jan 2008 - JylBoline)

META TOPICPARENT MouseBIRNDataFederation

Modification of HID for AIDB

The Mouse BIRN group works with many types of images and deals with multiple data sources. Many of the groups work with 3D volumes (mostly MR volumes). These may be raw or processed data, including atlases (which contain several types of information associated with anatomy). Our goal with this work is for the AIDB to be one of the primary Mouse BIRN publicly accessible data sources for users to upload and expose their data using tools created by the FBIRN group that are modified to fit our needs.
Line: 14 to 14
Added:
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Relevant Mouse Work


 <<O>>  Difference Topic HIDforAIDB (r1.5 - 20 Nov 2007 - JylBoline)

META TOPICPARENT MouseBIRNDataFederation

Modification of HID for AIDB

The Mouse BIRN group works with many types of images and deals with multiple data sources. Many of the groups work with 3D volumes (mostly MR volumes). These may be raw or processed data, including atlases (which contain several types of information associated with anatomy). Our goal with this work is for the AIDB to be one of the primary Mouse BIRN publicly accessible data sources for users to upload and expose their data using tools created by the FBIRN group that are modified to fit our needs.
Line: 38 to 38
  • 11/07: Mouse_XML_Upload.zip: simple JAVA gui for creating project and subject XML files
    • Due to meetings and other deadlines, no progress on uploading to AIDB yet, meet again this month
Added:
>
>
  • 11/19/07: met with Jeff B, Dingying, Allan, and Jyl: meeting minutes. All groups will try to upload a single dataset and meet next Tuesday 27th 10 AM to discuss any problems.


META FILEATTACHMENT HIDmeeting9_25_07.doc attr="" comment="Minutes from the joint meeting 9/25/07" date="1191006701" path="HID meeting 9_25_07.doc" size="79360" user="jboline" version="1.1"
META FILEATTACHMENT HIDUserWorkflow?.doc attr="" comment="General Workflow used by FBIRN and specifics of EAE example from Allan" date="1191006827" path="HID User Workflow.doc" size="72704" user="jboline" version="1.1"
META FILEATTACHMENT EAE_ProjectSetup.xml attr="" comment="Project Setup Example XML from EAE experiment" date="1191007057" path="EAE_ProjectSetup.xml" size="3372" user="jboline" version="1.1"
META FILEATTACHMENT EAE_Visit.xml attr="" comment="Visit/Subject Example XML from EAE experiment" date="1191007102" path="EAE_Visit.xml" size="3694" user="jboline" version="1.1"
META FILEATTACHMENT Mouse_XML_Upload.zip attr="" comment="simple JAVA gui for creating project and subject XML files" date="1195171466" path="Mouse_XML_Upload.zip" size="103472" user="jboline" version="1.1"
Added:
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META FILEATTACHMENT AIDBmeeting11_19_07.doc attr="" comment="meeting minutes" date="1195518480" path="AIDB meeting 11_19_07.doc" size="45056" user="jboline" version="1.1"

 <<O>>  Difference Topic HIDforAIDB (r1.4 - 16 Nov 2007 - JylBoline)

META TOPICPARENT MouseBIRNDataFederation

Modification of HID for AIDB

The Mouse BIRN group works with many types of images and deals with multiple data sources. Many of the groups work with 3D volumes (mostly MR volumes). These may be raw or processed data, including atlases (which contain several types of information associated with anatomy). Our goal with this work is for the AIDB to be one of the primary Mouse BIRN publicly accessible data sources for users to upload and expose their data using tools created by the FBIRN group that are modified to fit our needs.
Line: 35 to 35
      • Dingying will try to get their local upload script working and look at it to make sure it’s what we want.
      • Meet again before and at the AHM
Added:
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  • 11/07: Mouse_XML_Upload.zip: simple JAVA gui for creating project and subject XML files
    • Due to meetings and other deadlines, no progress on uploading to AIDB yet, meet again this month

META FILEATTACHMENT HIDmeeting9_25_07.doc attr="" comment="Minutes from the joint meeting 9/25/07" date="1191006701" path="HID meeting 9_25_07.doc" size="79360" user="jboline" version="1.1"
META FILEATTACHMENT HIDUserWorkflow?.doc attr="" comment="General Workflow used by FBIRN and specifics of EAE example from Allan" date="1191006827" path="HID User Workflow.doc" size="72704" user="jboline" version="1.1"
META FILEATTACHMENT EAE_ProjectSetup.xml attr="" comment="Project Setup Example XML from EAE experiment" date="1191007057" path="EAE_ProjectSetup.xml" size="3372" user="jboline" version="1.1"
META FILEATTACHMENT EAE_Visit.xml attr="" comment="Visit/Subject Example XML from EAE experiment" date="1191007102" path="EAE_Visit.xml" size="3694" user="jboline" version="1.1"
Added:
>
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META FILEATTACHMENT Mouse_XML_Upload.zip attr="" comment="simple JAVA gui for creating project and subject XML files" date="1195171466" path="Mouse_XML_Upload.zip" size="103472" user="jboline" version="1.1"

 <<O>>  Difference Topic HIDforAIDB (r1.3 - 28 Sep 2007 - JylBoline)

META TOPICPARENT MouseBIRNDataFederation

Modification of HID for AIDB

The Mouse BIRN group works with many types of images and deals with multiple data sources. Many of the groups work with 3D volumes (mostly MR volumes). These may be raw or processed data, including atlases (which contain several types of information associated with anatomy). Our goal with this work is for the AIDB to be one of the primary Mouse BIRN publicly accessible data sources for users to upload and expose their data using tools created by the FBIRN group that are modified to fit our needs.
Line: 16 to 16

Relevant Mouse Work

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  • Outcomes from working with the FBIRN group

Progress tracking

  • Renewed work began summer 2007 to upload MR data into the HID
  • Mouse BIRN working group was formed including Jeff B, Edriss, Diana, Allan, Queenie, and Jyl tasked with getting data into AIDB
Changed:
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  • Planned in person meeting 9/25/07 at Irvine with Dave Keator, Dingying Wei, and Jeff Grethe to run through test data
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  • In person meeting 9/25/07 at Irvine with Dave Keator, Dingying Wei, and Jeff Grethe to run through test data: Documentation
    • HIDmeeting9_25_07.doc: Minutes from the joint meeting 9/25/07
    • HIDUserWorkflow.doc: General Workflow used by FBIRN and specifics of EAE example from Allan
    • EAE_ProjectSetup.xml: Project Setup Example XML from EAE experiment
    • EAE_Visit.xml: Visit/Subject Example XML from EAE experiment
    • What's next:
      • Allan and Deepthi will take the XML scripts modified by Dingying and Dave today and try to make them work at UCLA.
      • Dingying will try to get their local upload script working and look at it to make sure it’s what we want.
      • Meet again before and at the AHM

Added:
>
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META FILEATTACHMENT HIDmeeting9_25_07.doc attr="" comment="Minutes from the joint meeting 9/25/07" date="1191006701" path="HID meeting 9_25_07.doc" size="79360" user="jboline" version="1.1"
META FILEATTACHMENT HIDUserWorkflow?.doc attr="" comment="General Workflow used by FBIRN and specifics of EAE example from Allan" date="1191006827" path="HID User Workflow.doc" size="72704" user="jboline" version="1.1"
META FILEATTACHMENT EAE_ProjectSetup.xml attr="" comment="Project Setup Example XML from EAE experiment" date="1191007057" path="EAE_ProjectSetup.xml" size="3372" user="jboline" version="1.1"
META FILEATTACHMENT EAE_Visit.xml attr="" comment="Visit/Subject Example XML from EAE experiment" date="1191007102" path="EAE_Visit.xml" size="3694" user="jboline" version="1.1"

 <<O>>  Difference Topic HIDforAIDB (r1.2 - 24 Sep 2007 - JylBoline)

META TOPICPARENT MouseBIRNDataFederation

Modification of HID for AIDB

The Mouse BIRN group works with many types of images and deals with multiple data sources. Many of the groups work with 3D volumes (mostly MR volumes). These may be raw or processed data, including atlases (which contain several types of information associated with anatomy). Our goal with this work is for the AIDB to be one of the primary Mouse BIRN publicly accessible data sources for users to upload and expose their data using tools created by the FBIRN group that are modified to fit our needs.
Line: 14 to 14
Added:
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Relevant Mouse Work


Progress tracking

  • Renewed work began summer 2007 to upload MR data into the HID
  • Mouse BIRN working group was formed including Jeff B, Edriss, Diana, Allan, Queenie, and Jyl tasked with getting data into AIDB

 <<O>>  Difference Topic HIDforAIDB (r1.1 - 21 Sep 2007 - JylBoline)
Line: 1 to 1
Added:
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META TOPICPARENT MouseBIRNDataFederation

Modification of HID for AIDB

The Mouse BIRN group works with many types of images and deals with multiple data sources. Many of the groups work with 3D volumes (mostly MR volumes). These may be raw or processed data, including atlases (which contain several types of information associated with anatomy). Our goal with this work is for the AIDB to be one of the primary Mouse BIRN publicly accessible data sources for users to upload and expose their data using tools created by the FBIRN group that are modified to fit our needs.

This resource would be available for:

  • Mouse BIRN source databases (clone relevant parts of their DB)
  • Any external users to access through simple user interfaces

Information on HID

Progress tracking

  • Renewed work began summer 2007 to upload MR data into the HID
  • Mouse BIRN working group was formed including Jeff B, Edriss, Diana, Allan, Queenie, and Jyl tasked with getting data into AIDB
  • Planned in person meeting 9/25/07 at Irvine with Dave Keator, Dingying Wei, and Jeff Grethe to run through test data

Topic: HIDforAIDB . { View | Diffs | r1.8 | > | r1.7 | > | r1.6 | More }

Revision r1.1 - 21 Sep 2007 - 17:10 - JylBoline
Revision r1.8 - 06 Mar 2008 - 07:12 - QueenieNg