MouseBIRN.IndSiteDBSchemas (r1.1 vs. r1.21)
Diffs

 <<O>>  Difference Topic IndSiteDBSchemas (r1.21 - 27 Apr 2006 - JylBoline)

META TOPICPARENT MouseBIRNDataFederation

Individual site Schemas

Line: 37 to 37
META FILEATTACHMENT duke_schema_w_segment9.pdf attr="" comment="Overview diagram" date="1118865280" path="duke_schema_w_segment9.pdf" size="31191" user="jboline" version="1.1"
META FILEATTACHMENT duke_civm_schema.pdf attr="" comment="Schema" date="1118865301" path="duke_civm_schema.pdf" size="18541" user="jboline" version="1.1"
META FILEATTACHMENT WebQTL?.pdf attr="" comment="Schema" date="1118865413" path="WebQTL.pdf" size="34042" user="jboline" version="1.1"
Deleted:
<
<
META FILEATTACHMENT DF_workplan_6_1_05.doc attr="" comment="DF Plan and Action Items. Word doc" date="1119653661" path="DF_workplan_6_1_05.doc" size="50688" user="jboline" version="1.1"
META FILEATTACHMENT DF_workplan_6_1_05.pdf attr="" comment="DF Plan and Action Items. PDF" date="1119653682" path="DF_workplan_6_1_05.pdf" size="26767" user="jboline" version="1.1"

META FILEATTACHMENT ccdb_schema-3.pdf attr="" comment="CCDB ER diagram" date="1119986067" path="ccdb_schema-3.pdf" size="19560" user="MaryannEMartone" version="1.1"
META FILEATTACHMENT CCDBconceptualoverview.jpg attr="" comment="Conceptual overview of CCDB schema" date="1119986327" path="CCDBconceptualoverview.jpg" size="23195" user="MaryannEMartone" version="1.1"
Deleted:
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META FILEATTACHMENT 3basiclevelsofdatamediation.doc attr="" comment="Diana Price's queries" date="1120684068" path="3 basic levels of data mediation.doc" size="25600" user="jboline" version="1.1"

META FILEATTACHMENT LONI_DB.pdf attr="" comment="PDF" date="1121377173" path="LONI_DB.pdf" size="19624" user="jboline" version="1.1"
Deleted:
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META FILEATTACHMENT mouseBIRN-global-schemaRWAG.doc attr="" comment="Revised global schema from Amarnath, Word Doc" date="1123722541" path="mouseBIRN-global-schemaRWAG.doc" size="32256" user="jboline" version="1.1"
META FILEATTACHMENT mouseBIRN-global-schemaRWAG2.doc attr="" comment="Revised global schema from Amarnath, Word Doc" date="1124816348" path="mouseBIRN-global-schemaRWAG2.doc" size="36352" user="jboline" version="1.1"
META FILEATTACHMENT SRBhierarchy_human.ppt attr="" comment="Common SRB hierarchy developed by Human BIRN IT working groups" date="1124818289" path="SRBhierarchy_human.ppt" size="48640" user="JeffreyGrethe" version="1.1"
META FILEATTACHMENT SRBhierarchy_mouse.ppt attr="" comment="First pass at adapting Human collection definition to Mouse projects" date="1124818334" path="SRBhierarchy_mouse.ppt" size="47616" user="JeffreyGrethe" version="1.1"
META FILEATTACHMENT mouseSchema1.xsd attr="" comment="Mike Fehnel's proposed mouse XML format" date="1127777836" path="mouseSchema 1.xsd" size="8574" user="jboline" version="1.1"
META FILEATTACHMENT SuggestedDataHierarchy?.pdf attr="" comment="Revised suggested SRB hierarchy" date="1128638297" path="Suggested Data Hierarchy.pdf" size="13793" user="jboline" version="1.1"
META FILEATTACHMENT Datainfosheet.doc attr="" comment="Required information of people wishing to share data outisde of BIRN" date="1128638390" path="Data info sheet.doc" size="79360" user="jboline" version="1.1"
META FILEATTACHMENT SRB_metadata.xls attr="" comment="potential metadata tags for the SRB" date="1139872543" path="SRB_metadata.xls" size="27136" user="jboline" version="1.1"

META TOPICMOVED jboline date="1146167409" from="MouseBIRN.MouseBIRNDataFederation" to="MouseBIRN.IndSiteDBSchemas"

 <<O>>  Difference Topic IndSiteDBSchemas (r1.20 - 27 Apr 2006 - JylBoline)
Changed:
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META TOPICPARENT MouseBIRNWorkGroups

Overview

Goals

Planning

Plans and Action Items

Sample Queries
  • Original queries: The questions scientists may want to ask of the mouse BIRN are what should drive the development of the database query interface. The original queries are posted on this site, http://nbirn.net/TestBeds/Mouse/SampleQueries.htm. To add and develop these queries, go to the page MouseBIRNQueries.
  • Additional Queries: Queries by Diana Price (broken into levels). This is an overview based on a statistical approach to examination of the data. 3basiclevelsofdatamediation.doc: Diana Price's queries

Working Pages

Minutes, etc.
  • Links to minutes, etc.

Other important information and links

Updates/Progress

  • Link to update documents
  • Or enter individual updates here

Previous Global Conceptual Schema

http://bcc-dev-0-1.nbirn.net:8080/MouseBeta/iview/
Potential schema items that arise from the queries (some are already part of the current global conceptual schema)

Revised Global Conceptual Schema 8/9/05

Facilitation of Data Exchange in Mouse BIRN

Data-Collection SRB metadata

2/13/06

Data-Collection SRB Hierarchy

Attached at the end of the page are Power Point documents containing the description of the Human data collection hierarchy SRBhierarchy_human.ppt and a pass at the mouse variant SRBhierarchy_mouse.ppt.

Revised SRB hierarchy for the mouse 10/06/05

XML standards

This XML file was suggested as a standard by Mike Fehnel as part of the first period of the mouse BIRN.

Facilitation of Data Exchange outside of Mouse BIRN

Information necessary for sharing data to those outside of BIRN

  • Datainfosheet.doc: Required information of people wishing to share data outisde of BIRN

>
>
META TOPICPARENT MouseBIRNDataFederation

Individual site Schemas

Added:
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>

Caltech
Changed:
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http://www.gg.caltech.edu/~edriss/

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Deleted:
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Deleted:
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Deleted:
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Duke
Deleted:
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Deleted:
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Line: 108 to 19

UCLA
Deleted:
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Deleted:
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UCSD
Changed:
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http://ccdb.ucsd.edu/

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>
  • http://ccdb.ucsd.edu/?

Deleted:
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  • Conceptual overview of CCDB schema:
    Conceptual overview of CCDB schema
Line: 146 to 51
META FILEATTACHMENT SuggestedDataHierarchy?.pdf attr="" comment="Revised suggested SRB hierarchy" date="1128638297" path="Suggested Data Hierarchy.pdf" size="13793" user="jboline" version="1.1"
META FILEATTACHMENT Datainfosheet.doc attr="" comment="Required information of people wishing to share data outisde of BIRN" date="1128638390" path="Data info sheet.doc" size="79360" user="jboline" version="1.1"
META FILEATTACHMENT SRB_metadata.xls attr="" comment="potential metadata tags for the SRB" date="1139872543" path="SRB_metadata.xls" size="27136" user="jboline" version="1.1"
Added:
>
>
META TOPICMOVED jboline date="1146167409" from="MouseBIRN.MouseBIRNDataFederation" to="MouseBIRN.IndSiteDBSchemas"

 <<O>>  Difference Topic IndSiteDBSchemas (r1.19 - 27 Apr 2006 - JylBoline)

META TOPICPARENT MouseBIRNWorkGroups

Overview

Line: 21 to 21

Working Pages
Changed:
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>

Minutes, etc.
  • Links to minutes, etc.
Line: 29 to 30

Other important information and links

Changed:
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  • Links to areas of interest to the topic
>
>


 <<O>>  Difference Topic IndSiteDBSchemas (r1.18 - 27 Apr 2006 - JylBoline)

META TOPICPARENT MouseBIRNWorkGroups
Changed:
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<

Data Federation Plan and Action Items generated at June 2005 mouse AHM:

>
>

Overview


Changed:
<
<

Data Mediation Work page

>
>

Goals


Added:
>
>

Planning

Plans and Action Items

Sample Queries
  • Original queries: The questions scientists may want to ask of the mouse BIRN are what should drive the development of the database query interface. The original queries are posted on this site, http://nbirn.net/TestBeds/Mouse/SampleQueries.htm. To add and develop these queries, go to the page MouseBIRNQueries.
  • Additional Queries: Queries by Diana Price (broken into levels). This is an overview based on a statistical approach to examination of the data. 3basiclevelsofdatamediation.doc: Diana Price's queries

Changed:
<
<

Sample Queries

Original queries
The questions scientists may want to ask of the mouse BIRN are what should drive the development of the database query interface. The original queries are posted on this site, http://nbirn.net/TestBeds/Mouse/SampleQueries.htm. To add and develop these queries, go to the page MouseBIRNQueries.
>
>
Working Pages

Changed:
<
<
Additional Queries
Queries by Diana Price (broken into levels). This is an overview based on a statistical approach to examination of the data.
>
>
Minutes, etc.
  • Links to minutes, etc.

Changed:
<
<
>
>

Other important information and links

  • Links to areas of interest to the topic

Added:
>
>

Updates/Progress

  • Link to update documents
  • Or enter individual updates here


 <<O>>  Difference Topic IndSiteDBSchemas (r1.17 - 13 Feb 2006 - JylBoline)

META TOPICPARENT MouseBIRNWorkGroups

Data Federation Plan and Action Items generated at June 2005 mouse AHM:

Line: 36 to 36

Facilitation of Data Exchange in Mouse BIRN

Changed:
<
<

Data-Collection Hierarchy

>
>

Data-Collection SRB metadata

2/13/06

Data-Collection SRB Hierarchy


Attached at the end of the page are Power Point documents containing the description of the Human data collection hierarchy SRBhierarchy_human.ppt and a pass at the mouse variant SRBhierarchy_mouse.ppt.

Line: 122 to 126
META FILEATTACHMENT mouseSchema1.xsd attr="" comment="Mike Fehnel's proposed mouse XML format" date="1127777836" path="mouseSchema 1.xsd" size="8574" user="jboline" version="1.1"
META FILEATTACHMENT SuggestedDataHierarchy?.pdf attr="" comment="Revised suggested SRB hierarchy" date="1128638297" path="Suggested Data Hierarchy.pdf" size="13793" user="jboline" version="1.1"
META FILEATTACHMENT Datainfosheet.doc attr="" comment="Required information of people wishing to share data outisde of BIRN" date="1128638390" path="Data info sheet.doc" size="79360" user="jboline" version="1.1"
Added:
>
>
META FILEATTACHMENT SRB_metadata.xls attr="" comment="potential metadata tags for the SRB" date="1139872543" path="SRB_metadata.xls" size="27136" user="jboline" version="1.1"

 <<O>>  Difference Topic IndSiteDBSchemas (r1.16 - 14 Dec 2005 - JylBoline)

META TOPICPARENT MouseBIRNWorkGroups

Data Federation Plan and Action Items generated at June 2005 mouse AHM:

Added:
>
>

Data Mediation Work page


Sample Queries

Original queries
The questions scientists may want to ask of the mouse BIRN are what should drive the development of the database query interface. The original queries are posted on this site, http://nbirn.net/TestBeds/Mouse/SampleQueries.htm. To add and develop these queries, go to the page MouseBIRNQueries.

 <<O>>  Difference Topic IndSiteDBSchemas (r1.15 - 06 Oct 2005 - JylBoline)

META TOPICPARENT MouseBIRNWorkGroups

Data Federation Plan and Action Items generated at June 2005 mouse AHM:

Line: 35 to 35

Attached at the end of the page are Power Point documents containing the description of the Human data collection hierarchy SRBhierarchy_human.ppt and a pass at the mouse variant SRBhierarchy_mouse.ppt.

Added:
>
>		 Revised SRB hierarchy for the mouse 10/06/05

XML standards

This XML file was suggested as a standard by Mike Fehnel as part of the first period of the mouse BIRN.
Added:
>
>

Facilitation of Data Exchange outside of Mouse BIRN

Information necessary for sharing data to those outside of BIRN

  • Datainfosheet.doc: Required information of people wishing to share data outisde of BIRN

Individual site Schemas

Line: 103 to 115
META FILEATTACHMENT SRBhierarchy_human.ppt attr="" comment="Common SRB hierarchy developed by Human BIRN IT working groups" date="1124818289" path="SRBhierarchy_human.ppt" size="48640" user="JeffreyGrethe" version="1.1"
META FILEATTACHMENT SRBhierarchy_mouse.ppt attr="" comment="First pass at adapting Human collection definition to Mouse projects" date="1124818334" path="SRBhierarchy_mouse.ppt" size="47616" user="JeffreyGrethe" version="1.1"
META FILEATTACHMENT mouseSchema1.xsd attr="" comment="Mike Fehnel's proposed mouse XML format" date="1127777836" path="mouseSchema 1.xsd" size="8574" user="jboline" version="1.1"
Added:
>
>
META FILEATTACHMENT SuggestedDataHierarchy?.pdf attr="" comment="Revised suggested SRB hierarchy" date="1128638297" path="Suggested Data Hierarchy.pdf" size="13793" user="jboline" version="1.1"
META FILEATTACHMENT Datainfosheet.doc attr="" comment="Required information of people wishing to share data outisde of BIRN" date="1128638390" path="Data info sheet.doc" size="79360" user="jboline" version="1.1"

 <<O>>  Difference Topic IndSiteDBSchemas (r1.14 - 26 Sep 2005 - JylBoline)

META TOPICPARENT MouseBIRNWorkGroups

Data Federation Plan and Action Items generated at June 2005 mouse AHM:

Line: 17 to 17

Changed:
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<

Current Global Conceptual Schema

>
>

Previous Global Conceptual Schema


http://bcc-dev-0-1.nbirn.net:8080/MouseBeta/iview/
Changed:
<
<

Potential schema items that arise from the queries (some are already part of the current global conceptual schema)

Subject
  • ID
  • species
  • strain
  • age
  • gender
  • weight
  • breeding info
  • genetic manipulation(appropriate here?)

Model
  • disease model/normal
  • stage of disease
  • gene or protein manipulated

Image
  • modality
  • experiment or label(?)
    • intensity of label
    • density of stain

Processing
  • registered to atlas-yes/no or type of atlas
  • volumes delineated
  • other processing of image (? # of spines in an area)

Region of interest
  • brain region (i.e. cortex, cerebellum, thalamus, etc)
  • white or gray matter
>
>
Potential schema items that arise from the queries (some are already part of the current global conceptual schema)

Revised Global Conceptual Schema 8/9/05

Added:
>
>

Facilitation of Data Exchange in Mouse BIRN

Data-Collection Hierarchy

Attached at the end of the page are Power Point documents containing the description of the Human data collection hierarchy SRBhierarchy_human.ppt and a pass at the mouse variant SRBhierarchy_mouse.ppt.

XML standards

This XML file was suggested as a standard by Mike Fehnel as part of the first period of the mouse BIRN.

Line: 102 to 84

Deleted:
<
<

Data-Collection Hierarchy

Attached at the end of the page are Power Point documents containing the description of the Human data collection hierarchy SRBhierarchy_human.ppt and a pass at the mouse variant SRBhierarchy_mouse.ppt.


Deleted:
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<

META FILEATTACHMENT Caltech_ER_Diagram_Overview.pdf attr="" comment="Overview diagram" date="1118861752" path="Caltech_ER_Diagram_Overview.pdf" size="56526" user="jboline" version="1.1"
META FILEATTACHMENT Caltech_ER_Diagram_Detailed..pdf attr="" comment="Detailed diagram" date="1118861780" path="Caltech_ER_Diagram_Detailed..pdf" size="163142" user="jboline" version="1.1"
META FILEATTACHMENT caltech_birn_schema.pdf attr="" comment="Schema" date="1118861834" path="caltech_birn_schema.pdf" size="12752" user="jboline" version="1.1"
Line: 126 to 102
META FILEATTACHMENT mouseBIRN-global-schemaRWAG2.doc attr="" comment="Revised global schema from Amarnath, Word Doc" date="1124816348" path="mouseBIRN-global-schemaRWAG2.doc" size="36352" user="jboline" version="1.1"
META FILEATTACHMENT SRBhierarchy_human.ppt attr="" comment="Common SRB hierarchy developed by Human BIRN IT working groups" date="1124818289" path="SRBhierarchy_human.ppt" size="48640" user="JeffreyGrethe" version="1.1"
META FILEATTACHMENT SRBhierarchy_mouse.ppt attr="" comment="First pass at adapting Human collection definition to Mouse projects" date="1124818334" path="SRBhierarchy_mouse.ppt" size="47616" user="JeffreyGrethe" version="1.1"
Added:
>
>
META FILEATTACHMENT mouseSchema1.xsd attr="" comment="Mike Fehnel's proposed mouse XML format" date="1127777836" path="mouseSchema 1.xsd" size="8574" user="jboline" version="1.1"

 <<O>>  Difference Topic IndSiteDBSchemas (r1.13 - 23 Aug 2005 - JeffreyGrethe)

META TOPICPARENT MouseBIRNWorkGroups

Data Federation Plan and Action Items generated at June 2005 mouse AHM:

Line: 100 to 100
  • Conceptual overview of CCDB schema:
    Conceptual overview of CCDB schema
Added:
>
>

Data-Collection Hierarchy

Attached at the end of the page are Power Point documents containing the description of the Human data collection hierarchy SRBhierarchy_human.ppt and a pass at the mouse variant SRBhierarchy_mouse.ppt.


Added:
>
>

META FILEATTACHMENT Caltech_ER_Diagram_Overview.pdf attr="" comment="Overview diagram" date="1118861752" path="Caltech_ER_Diagram_Overview.pdf" size="56526" user="jboline" version="1.1"
META FILEATTACHMENT Caltech_ER_Diagram_Detailed..pdf attr="" comment="Detailed diagram" date="1118861780" path="Caltech_ER_Diagram_Detailed..pdf" size="163142" user="jboline" version="1.1"
Line: 117 to 124
META FILEATTACHMENT LONI_DB.pdf attr="" comment="PDF" date="1121377173" path="LONI_DB.pdf" size="19624" user="jboline" version="1.1"
META FILEATTACHMENT mouseBIRN-global-schemaRWAG.doc attr="" comment="Revised global schema from Amarnath, Word Doc" date="1123722541" path="mouseBIRN-global-schemaRWAG.doc" size="32256" user="jboline" version="1.1"
META FILEATTACHMENT mouseBIRN-global-schemaRWAG2.doc attr="" comment="Revised global schema from Amarnath, Word Doc" date="1124816348" path="mouseBIRN-global-schemaRWAG2.doc" size="36352" user="jboline" version="1.1"
Added:
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META FILEATTACHMENT SRBhierarchy_human.ppt attr="" comment="Common SRB hierarchy developed by Human BIRN IT working groups" date="1124818289" path="SRBhierarchy_human.ppt" size="48640" user="JeffreyGrethe" version="1.1"
META FILEATTACHMENT SRBhierarchy_mouse.ppt attr="" comment="First pass at adapting Human collection definition to Mouse projects" date="1124818334" path="SRBhierarchy_mouse.ppt" size="47616" user="JeffreyGrethe" version="1.1"

 <<O>>  Difference Topic IndSiteDBSchemas (r1.12 - 23 Aug 2005 - JylBoline)

META TOPICPARENT MouseBIRNWorkGroups

Data Federation Plan and Action Items generated at June 2005 mouse AHM:

Line: 53 to 53
  • white or gray matter

Revised Global Conceptual Schema 8/9/05

Changed:
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<
>
>

Line: 99 to 101

 Conceptual overview of CCDB schema
Added:
>
>


META FILEATTACHMENT Caltech_ER_Diagram_Overview.pdf attr="" comment="Overview diagram" date="1118861752" path="Caltech_ER_Diagram_Overview.pdf" size="56526" user="jboline" version="1.1"
META FILEATTACHMENT Caltech_ER_Diagram_Detailed..pdf attr="" comment="Detailed diagram" date="1118861780" path="Caltech_ER_Diagram_Detailed..pdf" size="163142" user="jboline" version="1.1"
META FILEATTACHMENT caltech_birn_schema.pdf attr="" comment="Schema" date="1118861834" path="caltech_birn_schema.pdf" size="12752" user="jboline" version="1.1"
Line: 112 to 116
META FILEATTACHMENT 3basiclevelsofdatamediation.doc attr="" comment="Diana Price's queries" date="1120684068" path="3 basic levels of data mediation.doc" size="25600" user="jboline" version="1.1"
META FILEATTACHMENT LONI_DB.pdf attr="" comment="PDF" date="1121377173" path="LONI_DB.pdf" size="19624" user="jboline" version="1.1"
META FILEATTACHMENT mouseBIRN-global-schemaRWAG.doc attr="" comment="Revised global schema from Amarnath, Word Doc" date="1123722541" path="mouseBIRN-global-schemaRWAG.doc" size="32256" user="jboline" version="1.1"
Added:
>
>
META FILEATTACHMENT mouseBIRN-global-schemaRWAG2.doc attr="" comment="Revised global schema from Amarnath, Word Doc" date="1124816348" path="mouseBIRN-global-schemaRWAG2.doc" size="36352" user="jboline" version="1.1"

 <<O>>  Difference Topic IndSiteDBSchemas (r1.11 - 11 Aug 2005 - JylBoline)

META TOPICPARENT MouseBIRNWorkGroups

Data Federation Plan and Action Items generated at June 2005 mouse AHM:

Line: 53 to 53
  • white or gray matter

Revised Global Conceptual Schema 8/9/05

Changed:
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>
>

Line: 111 to 111
META FILEATTACHMENT CCDBconceptualoverview.jpg attr="" comment="Conceptual overview of CCDB schema" date="1119986327" path="CCDBconceptualoverview.jpg" size="23195" user="MaryannEMartone" version="1.1"
META FILEATTACHMENT 3basiclevelsofdatamediation.doc attr="" comment="Diana Price's queries" date="1120684068" path="3 basic levels of data mediation.doc" size="25600" user="jboline" version="1.1"
META FILEATTACHMENT LONI_DB.pdf attr="" comment="PDF" date="1121377173" path="LONI_DB.pdf" size="19624" user="jboline" version="1.1"
Changed:
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<
META FILEATTACHMENT mouseBIRN-global-schemaRWAG.txt attr="" comment="Revised global schema from Amarnath" date="1123716425" path="mouseBIRN-global-schemaRWAG.txt" size="10209" user="jboline" version="1.1"
>
>
META FILEATTACHMENT mouseBIRN-global-schemaRWAG.doc attr="" comment="Revised global schema from Amarnath, Word Doc" date="1123722541" path="mouseBIRN-global-schemaRWAG.doc" size="32256" user="jboline" version="1.1"

 <<O>>  Difference Topic IndSiteDBSchemas (r1.10 - 10 Aug 2005 - JylBoline)

META TOPICPARENT MouseBIRNWorkGroups

Data Federation Plan and Action Items generated at June 2005 mouse AHM:

Line: 19 to 19

Current Global Conceptual Schema

http://bcc-dev-0-1.nbirn.net:8080/MouseBeta/iview/
Changed:
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>

Potential schema items that arise from the queries (some are already part of the current global conceptual schema)

Subject
  • ID
Line: 51 to 51
Region of interest
  • brain region (i.e. cortex, cerebellum, thalamus, etc)
  • white or gray matter
Changed:
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<
>
>

Revised Global Conceptual Schema 8/9/05


Line: 108 to 111
META FILEATTACHMENT CCDBconceptualoverview.jpg attr="" comment="Conceptual overview of CCDB schema" date="1119986327" path="CCDBconceptualoverview.jpg" size="23195" user="MaryannEMartone" version="1.1"
META FILEATTACHMENT 3basiclevelsofdatamediation.doc attr="" comment="Diana Price's queries" date="1120684068" path="3 basic levels of data mediation.doc" size="25600" user="jboline" version="1.1"
META FILEATTACHMENT LONI_DB.pdf attr="" comment="PDF" date="1121377173" path="LONI_DB.pdf" size="19624" user="jboline" version="1.1"
Added:
>
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META FILEATTACHMENT mouseBIRN-global-schemaRWAG.txt attr="" comment="Revised global schema from Amarnath" date="1123716425" path="mouseBIRN-global-schemaRWAG.txt" size="10209" user="jboline" version="1.1"

 <<O>>  Difference Topic IndSiteDBSchemas (r1.9 - 14 Jul 2005 - JylBoline)

META TOPICPARENT MouseBIRNWorkGroups

Data Federation Plan and Action Items generated at June 2005 mouse AHM:

Line: 83 to 83
UCLA
Added:
>
>

UCSD
Line: 105 to 107
META FILEATTACHMENT ccdb_schema-3.pdf attr="" comment="CCDB ER diagram" date="1119986067" path="ccdb_schema-3.pdf" size="19560" user="MaryannEMartone" version="1.1"
META FILEATTACHMENT CCDBconceptualoverview.jpg attr="" comment="Conceptual overview of CCDB schema" date="1119986327" path="CCDBconceptualoverview.jpg" size="23195" user="MaryannEMartone" version="1.1"
META FILEATTACHMENT 3basiclevelsofdatamediation.doc attr="" comment="Diana Price's queries" date="1120684068" path="3 basic levels of data mediation.doc" size="25600" user="jboline" version="1.1"
Added:
>
>
META FILEATTACHMENT LONI_DB.pdf attr="" comment="PDF" date="1121377173" path="LONI_DB.pdf" size="19624" user="jboline" version="1.1"

 <<O>>  Difference Topic IndSiteDBSchemas (r1.8 - 13 Jul 2005 - JylBoline)

META TOPICPARENT MouseBIRNWorkGroups

Data Federation Plan and Action Items generated at June 2005 mouse AHM:

Line: 20 to 20

Current Global Conceptual Schema

http://bcc-dev-0-1.nbirn.net:8080/MouseBeta/iview/
Added:
>
>

Potential schema items that arise from the queries (some are already part of the current global conceptual schema)

Subject
  • ID
  • species
  • strain
  • age
  • gender
  • weight
  • breeding info
  • genetic manipulation(appropriate here?)

Model
  • disease model/normal
  • stage of disease
  • gene or protein manipulated

Image
  • modality
  • experiment or label(?)
    • intensity of label
    • density of stain

Processing
  • registered to atlas-yes/no or type of atlas
  • volumes delineated
  • other processing of image (? # of spines in an area)

Region of interest
  • brain region (i.e. cortex, cerebellum, thalamus, etc)
  • white or gray matter

Individual site Schemas


 <<O>>  Difference Topic IndSiteDBSchemas (r1.7 - 13 Jul 2005 - JylBoline)

META TOPICPARENT MouseBIRNWorkGroups
Changed:
<
<

Data Federation Plan and Action Items generated at June 2005 mouse AHM:

>
>

Data Federation Plan and Action Items generated at June 2005 mouse AHM:


Changed:
<
<
Sample Queries
Original queries
>
>

Sample Queries

Original queries

The questions scientists may want to ask of the mouse BIRN are what should drive the development of the database query interface. The original queries are posted on this site, http://nbirn.net/TestBeds/Mouse/SampleQueries.htm. To add and develop these queries, go to the page MouseBIRNQueries.
Changed:
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<
Additional Queries
>
>
Additional Queries

Queries by Diana Price (broken into levels). This is an overview based on a statistical approach to examination of the data.

Line: 14 to 15
Deleted:
<
<

Changed:
<
<
Current Global Conceptual Schema
>
>

Current Global Conceptual Schema


http://bcc-dev-0-1.nbirn.net:8080/MouseBeta/iview/

Added:
>
>

Individual site Schemas


Caltech

http://www.gg.caltech.edu/~edriss/


 <<O>>  Difference Topic IndSiteDBSchemas (r1.6 - 08 Jul 2005 - JylBoline)

META TOPICPARENT MouseBIRNWorkGroups

Data Federation Plan and Action Items generated at June 2005 mouse AHM:

Sample Queries
Added:
>
>
Original queries

The questions scientists may want to ask of the mouse BIRN are what should drive the development of the database query interface. The original queries are posted on this site, http://nbirn.net/TestBeds/Mouse/SampleQueries.htm. To add and develop these queries, go to the page MouseBIRNQueries.
Added:
>
>
Additional Queries

Queries by Diana Price (broken into levels). This is an overview based on a statistical approach to examination of the data.


 <<O>>  Difference Topic IndSiteDBSchemas (r1.5 - 06 Jul 2005 - JylBoline)

META TOPICPARENT MouseBIRNWorkGroups

Data Federation Plan and Action Items generated at June 2005 mouse AHM:

Line: 7 to 7
Sample Queries
The questions scientists may want to ask of the mouse BIRN are what should drive the development of the database query interface. The original queries are posted on this site, http://nbirn.net/TestBeds/Mouse/SampleQueries.htm. To add and develop these queries, go to the page MouseBIRNQueries.
Added:
>
>		 Queries by Diana Price (broken into levels). This is an overview based on a statistical approach to examination of the data.


Current Global Conceptual Schema
Line: 61 to 66
META FILEATTACHMENT DF_workplan_6_1_05.pdf attr="" comment="DF Plan and Action Items. PDF" date="1119653682" path="DF_workplan_6_1_05.pdf" size="26767" user="jboline" version="1.1"
META FILEATTACHMENT ccdb_schema-3.pdf attr="" comment="CCDB ER diagram" date="1119986067" path="ccdb_schema-3.pdf" size="19560" user="MaryannEMartone" version="1.1"
META FILEATTACHMENT CCDBconceptualoverview.jpg attr="" comment="Conceptual overview of CCDB schema" date="1119986327" path="CCDBconceptualoverview.jpg" size="23195" user="MaryannEMartone" version="1.1"
Added:
>
>
META FILEATTACHMENT 3basiclevelsofdatamediation.doc attr="" comment="Diana Price's queries" date="1120684068" path="3 basic levels of data mediation.doc" size="25600" user="jboline" version="1.1"

 <<O>>  Difference Topic IndSiteDBSchemas (r1.4 - 28 Jun 2005 - MaryannEMartone)

META TOPICPARENT MouseBIRNWorkGroups

Data Federation Plan and Action Items generated at June 2005 mouse AHM:

Line: 44 to 44
UCSD
Added:
>
>		 http://ccdb.ucsd.edu/

Added:
>
>

  • Conceptual overview of CCDB schema:
    Conceptual overview of CCDB schema

META FILEATTACHMENT Caltech_ER_Diagram_Overview.pdf attr="" comment="Overview diagram" date="1118861752" path="Caltech_ER_Diagram_Overview.pdf" size="56526" user="jboline" version="1.1"
META FILEATTACHMENT Caltech_ER_Diagram_Detailed..pdf attr="" comment="Detailed diagram" date="1118861780" path="Caltech_ER_Diagram_Detailed..pdf" size="163142" user="jboline" version="1.1"
Line: 54 to 59
META FILEATTACHMENT WebQTL?.pdf attr="" comment="Schema" date="1118865413" path="WebQTL.pdf" size="34042" user="jboline" version="1.1"
META FILEATTACHMENT DF_workplan_6_1_05.doc attr="" comment="DF Plan and Action Items. Word doc" date="1119653661" path="DF_workplan_6_1_05.doc" size="50688" user="jboline" version="1.1"
META FILEATTACHMENT DF_workplan_6_1_05.pdf attr="" comment="DF Plan and Action Items. PDF" date="1119653682" path="DF_workplan_6_1_05.pdf" size="26767" user="jboline" version="1.1"
Added:
>
>
META FILEATTACHMENT ccdb_schema-3.pdf attr="" comment="CCDB ER diagram" date="1119986067" path="ccdb_schema-3.pdf" size="19560" user="MaryannEMartone" version="1.1"
META FILEATTACHMENT CCDBconceptualoverview.jpg attr="" comment="Conceptual overview of CCDB schema" date="1119986327" path="CCDBconceptualoverview.jpg" size="23195" user="MaryannEMartone" version="1.1"

 <<O>>  Difference Topic IndSiteDBSchemas (r1.3 - 24 Jun 2005 - JylBoline)

META TOPICPARENT MouseBIRNWorkGroups
Added:
>
>

Data Federation Plan and Action Items generated at June 2005 mouse AHM:


Sample Queries
The questions scientists may want to ask of the mouse BIRN are what should drive the development of the database query interface. The original queries are posted on this site, http://nbirn.net/TestBeds/Mouse/SampleQueries.htm. To add and develop these queries, go to the page MouseBIRNQueries.
Line: 47 to 52
META FILEATTACHMENT duke_schema_w_segment9.pdf attr="" comment="Overview diagram" date="1118865280" path="duke_schema_w_segment9.pdf" size="31191" user="jboline" version="1.1"
META FILEATTACHMENT duke_civm_schema.pdf attr="" comment="Schema" date="1118865301" path="duke_civm_schema.pdf" size="18541" user="jboline" version="1.1"
META FILEATTACHMENT WebQTL?.pdf attr="" comment="Schema" date="1118865413" path="WebQTL.pdf" size="34042" user="jboline" version="1.1"
Added:
>
>
META FILEATTACHMENT DF_workplan_6_1_05.doc attr="" comment="DF Plan and Action Items. Word doc" date="1119653661" path="DF_workplan_6_1_05.doc" size="50688" user="jboline" version="1.1"
META FILEATTACHMENT DF_workplan_6_1_05.pdf attr="" comment="DF Plan and Action Items. PDF" date="1119653682" path="DF_workplan_6_1_05.pdf" size="26767" user="jboline" version="1.1"

 <<O>>  Difference Topic IndSiteDBSchemas (r1.2 - 24 Jun 2005 - JylBoline)

META TOPICPARENT MouseBIRNWorkGroups
Changed:
<
<		 Worksite for Data Management groups to interact.
>
>
Sample Queries
The questions scientists may want to ask of the mouse BIRN are what should drive the development of the database query interface. The original queries are posted on this site, http://nbirn.net/TestBeds/Mouse/SampleQueries.htm. To add and develop these queries, go to the page MouseBIRNQueries.

Added:
>
>

Current Global Conceptual Schema
http://bcc-dev-0-1.nbirn.net:8080/MouseBeta/iview/

 <<O>>  Difference Topic IndSiteDBSchemas (r1.1 - 15 Jun 2005 - JylBoline)
Line: 1 to 1
Added:
>
>
META TOPICPARENT MouseBIRNWorkGroups
Worksite for Data Management groups to interact.

Current Global Conceptual Schema
http://bcc-dev-0-1.nbirn.net:8080/MouseBeta/iview/

Caltech

http://www.gg.caltech.edu/~edriss/

Duke

Drexel, UTHSC

UCLA

UCSD

META FILEATTACHMENT Caltech_ER_Diagram_Overview.pdf attr="" comment="Overview diagram" date="1118861752" path="Caltech_ER_Diagram_Overview.pdf" size="56526" user="jboline" version="1.1"
META FILEATTACHMENT Caltech_ER_Diagram_Detailed..pdf attr="" comment="Detailed diagram" date="1118861780" path="Caltech_ER_Diagram_Detailed..pdf" size="163142" user="jboline" version="1.1"
META FILEATTACHMENT caltech_birn_schema.pdf attr="" comment="Schema" date="1118861834" path="caltech_birn_schema.pdf" size="12752" user="jboline" version="1.1"
META FILEATTACHMENT duke_schema_w_segment9.pdf attr="" comment="Overview diagram" date="1118865280" path="duke_schema_w_segment9.pdf" size="31191" user="jboline" version="1.1"
META FILEATTACHMENT duke_civm_schema.pdf attr="" comment="Schema" date="1118865301" path="duke_civm_schema