MouseBIRN.LONIMBATSchedule (r1.1 vs. r1.63)
Diffs

 <<O>>  Difference Topic LONIMBATSchedule (r1.63 - 07 Jan 2009 - DarenLee)

|*META TOPICPARENT*|MouseBIRNProgrammers ||
Line: 1777 to 1777

JANUARY
 Jan 5
Added:
>
>
  • Demo of prototype
  • BrainGraph Viewer Hyperbolic Library
    • Prefuse library
  • clean up resources
    • jar libraries
    • icons (move to common?)
  • mbManagerGraph
    • add hyperbolic functionality
    • fix graph viewing/orientation
      1. tree view
      2. force view
    • mbManagerDocking integration [Daren]
    • mbGraph Events/Listeners
    • mbManagerIO - read into mbGraph (Prefuse subclass?)
      1. standard file format (OBO/GO/OWL) [Seth]
  • BrainGraph Viewer Timeline
  • ToolTip code convert to JTable
    • mbSelectableAnnotated hierarchy?
  • Cross-IDE support?
  • DataSource view: add subtables foreach datatype
  • mbat3.0 config.xml / plugin directory structure
  • build.xml: add svn version to mbat.jar
    1. LiteratureSearch plugin
      • GoPubmed
      • Go3R
      • GUI frontend
    2. GENSAT download script
    3. semantic/ontology search research
    4. mbSecurity: design framework
    5. mbDataSourceBase::getTermMapping()
      1. plugin defines mapping
      2. stored in UMD server (need db ID)
      3. web app to enter term mapping?
    6. mbDataSource.getDefaultColumnDesc()?
    7. plugin sample for local DB
    1. mbViewer framework
      • bump up timeline? (mbViewer, mbViewerPlugins)
    2. Image3D API
    3. mbViewer: Info tabsheet with annotations
    4. mbViewer: load .atlas and .hdr
    5. mbRegistration: load atlas slice from mbManagerCart
    6. mbManagerCart: add tooltips
    7. mbManagerCart: add thumbnail preview
    8. mbSearch: add tabsheets for viewing results by datasource/by datatype
    9. BrainGraph: file formats to support?
    1. CalTech AIR workflow
      1. via Pipeline command line to cranium server [platform independent]
      2. local Pipeline [need to redo scripts for target OS]

     Jan 12
     Jan 19
     Jan 26

     <<O>>  Difference Topic LONIMBATSchedule (r1.62 - 16 Dec 2008 - DarenLee)

    		|*META TOPICPARENT*|MouseBIRNProgrammers ||
    Line: 1720 to 1720
  • jar libraries
  • icons (move to common?)
    • Added:
    >
    >
  • Demo of prototype

  • BrainGraph Viewer Hyperbolic Library
    • Prefuse library
    • Line: 1735 to 1736
    1. LiteratureSearch plugin
    Changed:
    <
    <
  • IEEE
    • >
    >
  • IEEE
  • GUI frontend

    • Added:
    >
    >
  • GENSAT download script
  • semantic/ontology search research

  • mbSecurity: design framework
  • mbDataSourceBase::getTermMapping()
    • Line: 1747 to 1751
  • mbDataSource.getDefaultColumnDesc()?
  • plugin sample for local DB
    • Deleted:
    <
    <
  • GENSAT download script

    1. mbViewer framework

     <<O>>  Difference Topic LONIMBATSchedule (r1.61 - 16 Dec 2008 - DarenLee)

    		|*META TOPICPARENT*|MouseBIRNProgrammers ||
    Line: 1678 to 1678
    1. LiteratureSearch plugin
    Changed:
    <
    <
  • Google scholar
  • Pubmed
  • Springer-Link
    • >
    >
  • Google scholar
  • Pubmed
  • Springer-Link

  • mbSecurity: design framework
    • Line: 1709 to 1709
    1. CalTech AIR workflow
    Added:
    >
    >
    1. via Pipeline command line to cranium server [platform independent]
    2. local Pipeline [need to redo scripts for target OS]

     Dec 15
    Added:
    >
    >
  • clean up resources
    • jar libraries
    • icons (move to common?)
  • BrainGraph Viewer Hyperbolic Library
    • Prefuse library
  • BrainGraph Viewer Timeline
  • ToolTip code convert to JTable
  • Cross-IDE support?
  • DataSource view: add subtables foreach datatype
  • mbat3.0 config.xml / plugin directory structure
  • build.xml: add svn version to mbat.jar
    1. LiteratureSearch plugin
      • IEEE
    2. mbSecurity: design framework
    3. mbDataSourceBase::getTermMapping()
      1. plugin defines mapping
      2. stored in UMD server (need db ID)
      3. web app to enter term mapping?
    4. mbDataSource.getDefaultColumnDesc()?
    5. plugin sample for local DB
    6. GENSAT download script
    1. mbViewer framework
    2. Image3D API
    3. mbViewer: Info tabsheet with annotations
    4. mbViewer: load .atlas and .hdr
    5. mbRegistration: load atlas slice from mbManagerCart
    6. mbManagerCart: add tooltips
    7. mbManagerCart: add thumbnail preview
    8. mbSearch: add tabsheets for viewing results by datasource/by datatype
    9. BrainGraph: file formats to support?
    1. CalTech AIR workflow
      1. via Pipeline command line to cranium server [platform independent]
      2. local Pipeline [need to redo scripts for target OS]

     Dec 22
     Dec 29

     <<O>>  Difference Topic LONIMBATSchedule (r1.60 - 09 Dec 2008 - DarenLee)

    		|*META TOPICPARENT*|MouseBIRNProgrammers ||
    Line: 1549 to 1549

     Nov 24
    Added:
    >
    >
  • clean up resources
    • jar libraries
    • icons (move to common?)
  • BrainGraph Viewer Hyperbolic Library
    • Prefuse library
  • BrainGraph Viewer Timeline
  • ToolTip code convert to JTable
  • Cross-IDE support?
  • DataSource view: add subtables foreach datatype
  • mbat3.0 config.xml / plugin directory structure
  • build.xml: add svn version to mbat.jar
    1. LiteratureSearch plugin
      • results in external browser
    2. mbSecurity: design framework
    3. mbDataSourceBase::getTermMapping()
      1. plugin defines mapping
      2. stored in UMD server (need db ID)
      3. web app to enter term mapping?
    4. mbDataSource.getDefaultColumnDesc()?
    5. plugin sample for local DB
    6. GENSAT download script
    1. mbManagerIO: design framework
    2. mbManagerIO: integrate ImageJ plugins
    3. mbViewer framework
    4. Image3D API
    5. mbViewer: Info tabsheet with annotations
    6. mbViewer: load .atlas and .hdr
    7. mbRegistration: load atlas slice from mbManagerCart
    8. mbManagerCart: add tooltips
    9. mbManagerCart: add thumbnail preview
    10. mbSearch: add tabsheets for viewing results by datasource/by datatype
    11. BrainGraph: file formats to support?
    1. CalTech AIR workflow
      • Win32/MacOSX builds for LONI pipeline [Seth]

    DECEMBER
     Dec 1
    Added:
    >
    >
  • clean up resources
    • jar libraries
    • icons (move to common?)
  • BrainGraph Viewer Hyperbolic Library
    • Prefuse library
  • BrainGraph Viewer Timeline
  • ToolTip code convert to JTable
  • Cross-IDE support?
  • DataSource view: add subtables foreach datatype
  • mbat3.0 config.xml / plugin directory structure
  • build.xml: add svn version to mbat.jar
    1. LiteratureSearch plugin
      • results in external browser
    2. mbSecurity: design framework
    3. mbDataSourceBase::getTermMapping()
      1. plugin defines mapping
      2. stored in UMD server (need db ID)
      3. web app to enter term mapping?
    4. mbDataSource.getDefaultColumnDesc()?
    5. plugin sample for local DB
    6. GENSAT download script
    1. mbViewer framework
    2. Image3D API
    3. mbViewer: Info tabsheet with annotations
    4. mbViewer: load .atlas and .hdr
    5. mbRegistration: load atlas slice from mbManagerCart
    6. mbManagerCart: add tooltips
    7. mbManagerCart: add thumbnail preview
    8. mbSearch: add tabsheets for viewing results by datasource/by datatype
    9. BrainGraph: file formats to support?
    1. CalTech AIR workflow

     Dec 8
    Added:
    >
    >
  • clean up resources
    • jar libraries
    • icons (move to common?)
  • BrainGraph Viewer Hyperbolic Library
    • Prefuse library
  • BrainGraph Viewer Timeline
  • ToolTip code convert to JTable
  • Cross-IDE support?
  • DataSource view: add subtables foreach datatype
  • mbat3.0 config.xml / plugin directory structure
  • build.xml: add svn version to mbat.jar
    1. LiteratureSearch plugin
      • Google scholar
      • Pubmed
      • Springer-Link
    2. mbSecurity: design framework
    3. mbDataSourceBase::getTermMapping()
      1. plugin defines mapping
      2. stored in UMD server (need db ID)
      3. web app to enter term mapping?
    4. mbDataSource.getDefaultColumnDesc()?
    5. plugin sample for local DB
    6. GENSAT download script
    1. mbViewer framework
    2. Image3D API
    3. mbViewer: Info tabsheet with annotations
    4. mbViewer: load .atlas and .hdr
    5. mbRegistration: load atlas slice from mbManagerCart
    6. mbManagerCart: add tooltips
    7. mbManagerCart: add thumbnail preview
    8. mbSearch: add tabsheets for viewing results by datasource/by datatype
    9. BrainGraph: file formats to support?
    1. CalTech AIR workflow

     Dec 15
     Dec 22
     Dec 29

     <<O>>  Difference Topic LONIMBATSchedule (r1.59 - 18 Nov 2008 - DarenLee)

    		|*META TOPICPARENT*|MouseBIRNProgrammers ||
    Line: 1441 to 1441
  • jar libraries
  • icons (move to common?)
    • Changed:
    <
    <
  • Merge MBATSearch and SearchSubworkspaceQueryTerms?
    • >
    >
  • Merge MBATSearch and SearchSubworkspaceQueryTerms?

  • BrainGraph Viewer Hyperbolic Library
    • Prefuse library
    • Line: 1492 to 1492

     Nov 17
    Added:
    >
    >
  • clean up resources
    • jar libraries
    • icons (move to common?)
  • BrainGraph Viewer Hyperbolic Library
    • Prefuse library
  • BrainGraph Viewer Timeline
  • ToolTip code convert to JTable
  • Cross-IDE support?
  • DataSource view: add subtables foreach datatype
  • mbat3.0 config.xml / plugin directory structure
  • build.xml: add svn version to mbat.jar
    1. LiteratureSearch plugin
      • results in external browser
    2. mbSecurity: design framework
    3. mbDataSourceBase::getTermMapping()
      1. plugin defines mapping
      2. stored in UMD server (need db ID)
      3. web app to enter term mapping?
    4. mbDataSource.getDefaultColumnDesc()?
    5. plugin sample for local DB
    6. GENSAT download script
    1. mbManagerIO: design framework
    2. mbManagerIO: integrate ImageJ plugins
    3. mbViewer framework
    4. Image3D API
    5. mbViewer: Info tabsheet with annotations
    6. mbViewer: load .atlas and .hdr
    7. mbRegistration: load atlas slice from mbManagerCart
    8. mbManagerCart: add tooltips
    9. mbManagerCart: add thumbnail preview
    10. mbSearch: add tabsheets for viewing results by datasource/by datatype
    11. BrainGraph: file formats to support?
    1. CalTech AIR workflow
      • Win32/MacOSX builds for LONI pipeline [Seth]

     Nov 24

    DECEMBER

     <<O>>  Difference Topic LONIMBATSchedule (r1.58 - 12 Nov 2008 - DarenLee)

    		|*META TOPICPARENT*|MouseBIRNProgrammers ||
    Line: 1430 to 1430
  • BrainGraph: file formats to support?
    Changed:
    <
    <
  • CalTech AIR pipeline
    • >
    >
  • CalTech AIR workflow

    • Win32 or MacOSX? only
     Nov 10
    Added:
    >
    >
  • clean up resources
    • jar libraries
    • icons (move to common?)
  • Merge MBATSearch and SearchSubworkspaceQueryTerms?
  • BrainGraph Viewer Hyperbolic Library
    • Prefuse library
  • BrainGraph Viewer Timeline
  • Cross-IDE support?
  • DataSource view: add subtables foreach datatype
  • mbat3.0 config.xml / plugin directory structure
  • build.xml: add svn version to mbat.jar
    1. LiteratureSearch plugin
      • results in external browser
    2. mbSecurity: design framework
    3. mbDataSourceBase::getTermMapping()
      1. plugin defines mapping
      2. stored in UMD server (need db ID)
      3. web app to enter term mapping?
    4. mbDataSource.getDefaultColumnDesc()?
    5. plugin sample for local DB
    6. GENSAT download script
    1. mbManagerIO: design framework
    2. mbManagerIO: integrate ImageJ plugins
    3. mbViewer framework
    4. mbViewer: Info tabsheet with annotations
    5. mbViewer: load .atlas and .hdr
    6. mbRegistration: load atlas slice from mbManagerCart
    7. mbManagerCart: add tooltips
    8. mbManagerCart: add thumbnail preview
    9. mbSearch: add tabsheets for viewing results by datasource/by datatype
    10. BrainGraph: file formats to support?
    1. CalTech AIR workflow
      • Win32/MacOSX builds for LONI pipeline [Seth]

     Nov 17
     Nov 24

     <<O>>  Difference Topic LONIMBATSchedule (r1.57 - 12 Nov 2008 - DarenLee)

    		|*META TOPICPARENT*|MouseBIRNProgrammers ||
    Line: 1382 to 1382
    1. Debug & Test
    1. Debug & Test
    Changed:
    <
    <
    ----Oct 19Oct 20-22 BIRN AHM
    >
    >
     Oct 19Oct 20-22 BIRN AHM

    		-->
    NOVEMBER
    Changed:
    <
    <
    ----Nov 3
    >
    >
     Nov 3
  • clean up resources
    • jar libraries
    • Line: 1416 to 1416
  • migrate GN: assign to UT
    Deleted:
    <
    <
  • ImageJ testing
  • mbViewer framework

  • mbManagerIO: design framework
  • mbManagerIO: integrate ImageJ plugins
    • Added:
    >
    >
  • mbViewer framework

  • mbViewer: Info tabsheet with annotations
  • mbViewer: load .atlas and .hdr
    • Line: 1436 to 1435
  • Win32 or MacOSX? only
    • Added:
    >
    >
     Nov 10
     Nov 17
     Nov 24

    DECEMBER
     Dec 1
     Dec 8
     Dec 15
     Dec 22
     Dec 29
    Added:
    >
    >
    JANUARY
     Jan 5
     Jan 12
     Jan 19
     Jan 26


     <<O>>  Difference Topic LONIMBATSchedule (r1.56 - 12 Nov 2008 - QueenieNg)

    		|*META TOPICPARENT*|MouseBIRNProgrammers ||
    Line: 10 to 10
    Wk

    		Date

    Changed:
    <
    <
    Steve

    		Queenie

    		Daren

    		Davit
    >
    >
    Steve

    		Queenie

    		 Daren

    		Davit

    		<!--
    JANUARY
    Changed:
    <
    <
    --Jan 21
    >
    >
    ---- Jan 21

    CODE FREEZE
    Line: 30 to 32

    Changed:
    <
    <
  • SVN
    • >
    >
  • SVN

    • Deleted:
    <
    <

    37Jan 28
    Line: 1381 to 1382
    1. Debug & Test
    1. Debug & Test
    Changed:
    <
    <
    --Oct 19Oct 20-22 BIRN AHM
    >
    >
    ----Oct 19Oct 20-22 BIRN AHM

    		-->
    NOVEMBER
    Changed:
    <
    <
    --Nov 3
    >
    >
    ----Nov 3
  • clean up resources
    • jar libraries

    •  <<O>>  Difference Topic LONIMBATSchedule (r1.55 - 12 Nov 2008 - DarenLee)

    		|*META TOPICPARENT*|MouseBIRNProgrammers ||
    Line: 631 to 631
    18Jun 08
    17Jun 15
    16Jun 22
    Deleted:
    <
    <    		 -->

    JULY
    15Jul 06
    1. Query Results Table
    Line: 1383 to 1382

    1. Debug & Test
    --Oct 19Oct 20-22 BIRN AHM
    Added:
    >
    >    		 -->
    NOVEMBER
    --Nov 3
    1. clean up resources
      • jar libraries
      • icons (move to common?)
    2. Merge MBATSearch and SearchSubworkspaceQueryTerms?
    3. BrainGraph Viewer Timeline
    4. BrainGraph Viewer Hyperbolic Library
    5. Cross-IDE support?
    6. DataSource view: add subtables foreach datatype
    7. mbat3.0 config.xml / plugin directory structure
    8. build.xml: add svn version to mbat.jar
    1. LiteratureSearch plugin Timeline
    2. mbDataSourceBase::getTermMapping()
      1. plugin defines mapping
      2. stored in UMD server (need db ID)
      3. web app to enter term mapping?
    3. mbDataSource.getDefaultColumnDesc()?
    4. plugin sample for local DB
    5. GENSAT download script
    6. mbSecurity: design framework
    7. migrate GN: assign to UT
    1. ImageJ testing
    2. mbViewer framework
    3. mbManagerIO: design framework
    4. mbManagerIO: integrate ImageJ plugins
    5. mbViewer: Info tabsheet with annotations
    6. mbViewer: load .atlas and .hdr
    7. mbRegistration: load atlas slice from mbManagerCart
    8. mbManagerCart: add tooltips
    9. mbManagerCart: add thumbnail preview
    10. mbSearch: add tabsheets for viewing results by datasource/by datatype
    11. BrainGraph: file formats to support?
    1. CalTech AIR pipeline
      • Win32 or MacOSX? only


     <<O>>  Difference Topic LONIMBATSchedule (r1.54 - 11 Oct 2008 - DarenLee)

    		|*META TOPICPARENT*|MouseBIRNProgrammers ||
    Line: 1322 to 1322
  • update look and feel
    • OCTOBER
    Changed:
    <
    <
    2Oct 05
    1. Debug & Test
    1. Debug & Test
    1. Debug & Test
    >
    >
    2Oct 05
  • Mantis bugs
  • clean up resources
    • jar libraries
    • icons (move to common?)
  • Merge MBATSearch and SearchSubworkspaceQueryTerms?
  • Cross-IDE support?
  • DataSource view: add subtables foreach datatype
  • Lookinto extracting BrainGraph Hyperbolic View module
  • mbat3.0 config.xml / plugin directory structure
  • build.xml: add svn version to mbat.jar
    1. QA query term searches
    2. Mantis bugs
    3. update production server
    4. update BMDB production server
    5. GENSAT image IDs not matching NCBI
    6. mbDataSourceBase::getTermMapping()
      1. plugin defines mapping
      2. stored in UMD server (need db ID)
      3. web app to enter term mapping?
    7. mbDataSource.getDefaultColumnDesc()?
    8. plugin sample for local DB
    9. GENSAT download script
    10. mbSecurity: design framework
    11. migrate GN: assign to UT
    1. wiki documentation
      1. mbManagerCart - cart listeners
      2. mbDataSource - developing plugins
    2. mbat: Welcome workspace text
    3. Mantis bugs
    4. mbManagerIO: design framework
    5. mbManagerIO: integrate ImageJ plugins
    6. mbViewer: Info tabsheet with annotations
    7. mbViewer: load .atlas and .hdr
    8. mbRegistration: load atlas slice from mbManagerCart
    9. mbManagerCart: add tooltips
    10. mbManagerCart: add thumbnail preview
    11. mbSearch: add tabsheets for viewing results by datasource/by datatype
    12. BrainGraph: file formats to support?

    1Oct 12
    1. Debug & Test
    1. Debug & Test

     <<O>>  Difference Topic LONIMBATSchedule (r1.53 - 03 Oct 2008 - DarenLee)

    		|*META TOPICPARENT*|MouseBIRNProgrammers ||
    Line: 1271 to 1271
  • Anatomical Area: keep only "any", "CNS", "Other body part"
  • mbAnnotatedObject::setDataSource() for source description
    • Added:
    >
    >
  • mbat: About CSS

  • QA query term searches
  • Mantis bugs
  • update production server
    • Line: 1301 to 1302
  • mbManagerCart - cart listeners
  • mbDataSource - developing plugins
    • Changed:
    <
    <
  • mbat: About dialog
    • >
    >
  • mbat: About dialog

  • mbat: Welcome workspace text
  • Mantis bugs

    •  <<O>>  Difference Topic LONIMBATSchedule (r1.52 - 01 Oct 2008 - DarenLee)

    		|*META TOPICPARENT*|MouseBIRNProgrammers ||
    Line: 1244 to 1244

    3Sep 28
    Changed:
    <
    <
  • Query Results Table
    • >
    >
  • Query Results Table

    Changed:
    <
    <
  • offset tooltip (y-direction)
  • mouse exit event via table headers
    • >
    >
  • offset tooltip (y-direction)
  • mouse exit event via table headers

  • fix query term dependencies
  • Mantis bugs
    • Line: 1264 to 1264
  • build.xml: add svn version to mbat.jar
    Changed:
    <
    <
  • query terms:
    • >
    >
  • query terms:

    1. Experimental Info: remove "Experimental Type"
    2. Experimental Info: Project: Keep only "any" and "keyword"
    Changed:
    <
    <
  • Anatomical Area: keep only "any", "CNS", "Other body part"
    • >
    >
  • Anatomical Area: keep only "any", "CNS", "Other body part"

    • Added:
    >
    >
  • mbAnnotatedObject::setDataSource() for source description

  • QA query term searches
    • Deleted:
    <
    <
  • mbAnnotatedObject::setDataSource() for source description

  • Mantis bugs
  • update production server
  • update BMDB production server
    • Line: 1301 to 1301
  • mbManagerCart - cart listeners
  • mbDataSource - developing plugins
    • Added:
    >
    >
  • mbat: About dialog
  • mbat: Welcome workspace text

  • Mantis bugs
  • mbManagerIO: design framework

    •  <<O>>  Difference Topic LONIMBATSchedule (r1.51 - 01 Oct 2008 - DarenLee)

    		|*META TOPICPARENT*|MouseBIRNProgrammers ||
    Line: 1242 to 1242
  • update look and feel
    • Changed:
    <
    <
    3Sep 28
    1. Debug & Test
    1. Debug & Test
    1. Debug & Test
    >
    >
    3Sep 28
    1. Query Results Table
      1. offset tooltip (y-direction)
      2. mouse exit event via table headers
    2. fix query term dependencies
    3. Mantis bugs
    4. clean up resources
      • jar libraries
      • icons (move to common?)
    5. Cross-IDE support?
    6. DataSource view: add subtables foreach datatype
    7. Lookinto extracting BrainGraph Hyperbolic View module
    8. mbat3.0 config.xml / plugin directory structure
    9. build.xml: add svn version to mbat.jar
    1. query terms:
      1. Experimental Info: remove "Experimental Type"
      2. Experimental Info: Project: Keep only "any" and "keyword"
      3. Anatomical Area: keep only "any", "CNS", "Other body part"
    2. QA query term searches
    3. mbAnnotatedObject::setDataSource() for source description
    4. Mantis bugs
    5. update production server
    6. update BMDB production server
    7. GENSAT image IDs not matching NCBI
    8. mbDataSourceBase::getTermMapping()
      1. plugin defines mapping
      2. stored in UMD server (need db ID)
      3. web app to enter term mapping?
    9. mbDataSource.getDefaultColumnDesc()?
    10. plugin sample for local DB
    11. GENSAT download script
    12. mbSecurity: design framework
    13. migrate GN: assign to UT
    1. mbSearch: SourceResultPanel filter by experimental type
    2. mbat: plugin directory structure
    3. mbat: Eclipse builders and build.xml scripts
    4. mbat: install4J
    5. wiki documentation
      1. Architecture - mbObject
      2. mbWorkspaceBase - developing new workspace
      3. mbManagerCart - cart listeners
      4. mbDataSource - developing plugins
    6. Mantis bugs
    7. mbManagerIO: design framework
    8. mbManagerIO: integrate ImageJ plugins
    9. mbViewer: Info tabsheet with annotations
    10. mbViewer: load .atlas and .hdr
    11. mbRegistration: load atlas slice from mbManagerCart
    12. mbManagerCart: add tooltips
    13. mbManagerCart: add thumbnail preview
    14. mbSearch: add tabsheets for viewing results by datasource/by datatype
    15. BrainGraph: file formats to support?
    1. normalized landmark positions
    2. update look and feel

    OCTOBER
    2Oct 05
    1. Debug & Test

     <<O>>  Difference Topic LONIMBATSchedule (r1.50 - 24 Sep 2008 - DarenLee)

    		|*META TOPICPARENT*|MouseBIRNProgrammers ||
    Line: 1184 to 1184
  • build.xml: add svn version to mbat.jar
    Added:
    >
    >
  • query terms:
    1. Experimental Info: remove "Experimental Type"
    2. Experimental Info: Project: Keep only "any" and "keyword"
    3. Anatomical Area: keep only "any", "CNS", "Other body part"

  • GENSAT image IDs not matching NCBI
  • QA query term searches
  • mbAnnotatedObject::setDataSource() for source description

    •  <<O>>  Difference Topic LONIMBATSchedule (r1.49 - 23 Sep 2008 - DarenLee)

    		|*META TOPICPARENT*|MouseBIRNProgrammers ||
    Line: 1159 to 1159
    1. Query Results Table
    Changed:
    <
    <
  • Tooltips bounding box issues
  • Thumbnail on demand
  • Stop thumbnail loading on "new search"
  • Hide thumbnails on table hide
    • >
    >
  • Tooltips bounding box issues
  • Thumbnail on demand
  • Stop thumbnail loading on "new search"
  • Hide thumbnails on table hide

    Changed:
    <
    <
  • Collapse datasource
  • Collapse datatype table
    • >
    >
  • Collapse datasource
  • Collapse datatype table

    • Added:
    >
    >
  • offset tooltip (y-direction)

  • fix query term dependencies
    • Added:
    >
    >
  • Mantis bugs

  • clean up resources
    • jar libraries
    • Line: 1208 to 1210
  • mbat: remove hardcoded paths for plugin folders (plugin.xml)
  • mbSearch: SourceResultPanel filter by experimental type
  • mbat: install4J
    • Changed:
    <
    <
  • mbat: wiki documentation
    • >
    >
  • wiki documentation
    1. Architecture - mbObject
    2. mbManagerCart - cart listeners
    3. mbWorkspaceBase - developing new workspace
    4. mbDataSource - developing plugins

  • mbManagerIO: design framework
  • mbManagerIO: integrate ImageJ plugins

    •  <<O>>  Difference Topic LONIMBATSchedule (r1.48 - 23 Sep 2008 - DarenLee)

    		|*META TOPICPARENT*|MouseBIRNProgrammers ||
    Line: 1204 to 1204
  • mbRegistration: save to cart (mbObject)
  • mbViewer: dispose OpenGL resources
  • mbat: switch from SkinLF to system LAF; override UI properties
    • Added:
    >
    >
  • mbat: JMenuBar add/remove workspace menus
  • mbat: remove hardcoded paths for plugin folders (plugin.xml)

  • mbSearch: SourceResultPanel filter by experimental type
    • Deleted:
    <
    <
  • mbat: JMenuBar clone
  • mbat: plugin folder configs (remove hardcoded paths)

  • mbat: install4J
  • mbat: wiki documentation

    •  <<O>>  Difference Topic LONIMBATSchedule (r1.47 - 19 Sep 2008 - DarenLee)

    		|*META TOPICPARENT*|MouseBIRNProgrammers ||
    Line: 1224 to 1224
    1. Zoom: reposition landmarks
    2. Make images resizable to frame
    Added:
    >
    >
  • normalized landmark positions

  • update look and feel

    •  <<O>>  Difference Topic LONIMBATSchedule (r1.46 - 19 Sep 2008 - DarenLee)

    		|*META TOPICPARENT*|MouseBIRNProgrammers ||
    Line: 1155 to 1155

    4Sep 21CODE FREEZE
    Changed:
    <
    <
    1. Debug & Test
    1. Debug & Test
    1. Debug & Test
    >
    >
    1. Query Results Table
      1. Tooltips bounding box issues
      2. Thumbnail on demand
      3. Stop thumbnail loading on "new search"
      4. Hide thumbnails on table hide
        1. Collapse datasource
        2. Collapse datatype table
    2. fix query term dependencies
    3. clean up resources
      • jar libraries
      • icons (move to common?)
    4. Cross-IDE support?
    5. DataSource view: add subtables foreach datatype
    6. Lookinto extracting BrainGraph Hyperbolic View module
    7. mbat3.0 config.xml / plugin directory structure
    8. build.xml: add svn version to mbat.jar
    1. GENSAT image IDs not matching NCBI
    2. QA query term searches
    3. mbAnnotatedObject::setDataSource() for source description
    4. update production server
    5. mbDataSourceBase::getTermMapping()
      1. plugin defines mapping
      2. stored in UMD server (need db ID)
      3. web app to enter term mapping?
    6. mbDataSource.getDefaultColumnDesc()?
    7. plugin sample for local DB
    8. GENSAT download script
    9. mbSecurity: design framework
    10. migrate GN: assign to UT
    1. mbRegistration: load image from mbManagerCart (mbObject)
    2. mbRegistration: save to cart (mbObject)
    3. mbViewer: dispose OpenGL resources
    4. mbat: switch from SkinLF to system LAF; override UI properties
    5. mbSearch: SourceResultPanel filter by experimental type
    6. mbat: JMenuBar clone
    7. mbat: plugin folder configs (remove hardcoded paths)
    8. mbat: install4J
    9. mbat: wiki documentation
    10. mbManagerIO: design framework
    11. mbManagerIO: integrate ImageJ plugins
    12. mbViewer: Info tabsheet with annotations
    13. mbViewer: load .atlas and .hdr
    14. mbRegistration: load atlas slice from mbManagerCart
    15. mbManagerCart: add tooltips
    16. mbManagerCart: add thumbnail preview
    17. mbSearch: add tabsheets for viewing results by datasource/by datatype
    18. BrainGraph: file formats to support?
    1. Zoom: reposition landmarks
    2. Make images resizable to frame
    3. update look and feel

    3Sep 28
    1. Debug & Test
    1. Debug & Test

     <<O>>  Difference Topic LONIMBATSchedule (r1.45 - 16 Sep 2008 - DarenLee)

    		|*META TOPICPARENT*|MouseBIRNProgrammers ||
    Line: 1109 to 1109
  • add full query term support
  • GENSAT image IDs not matching NCBI
  • QA query term searches
    • Added:
    >
    >
  • mbAnnotatedObject::setDataSource() for source description

  • update production server
  • mbDataSourceBase::getTermMapping()

    •  <<O>>  Difference Topic LONIMBATSchedule (r1.44 - 16 Sep 2008 - DarenLee)

    		|*META TOPICPARENT*|MouseBIRNProgrammers ||
    Line: 1085 to 1085
  • Tooltips bounding box issues
  • Thumbnail on demand
  • Stop thumbnail loading on "new search"
    • Added:
    >
    >
  • Hide thumbnails on table hide
    1. Collapse datasource
    2. Collapse datatype table

  • fix query term dependencies
  • clean up resources
    • Line: 1093 to 1098
  • icons (move to common?)
    • Added:
    >
    >
  • Cross-IDE support?

  • DataSource view: add subtables foreach datatype
  • Lookinto extracting BrainGraph Hyperbolic View module
  • mbat3.0 config.xml / plugin directory structure
    • Line: 1126 to 1132
  • mbSearch: SourceResultPanel filter by experimental type
  • mbat: install4J
  • mbat: wiki documentation
    • Added:
    >
    >
  • mbat: plugin folder configs (remove hardcoded paths)

  • mbManagerIO: design framework
  • mbManagerIO: integrate ImageJ plugins

    •  <<O>>  Difference Topic LONIMBATSchedule (r1.43 - 15 Sep 2008 - DarenLee)

    		|*META TOPICPARENT*|MouseBIRNProgrammers ||
    Line: 1078 to 1078
  • Save to Cart
    • Changed:
    <
    <
    5Sep 14
    >
    >
    5Sep 14
    1. Query Results Table
      1. Tooltips bounding box issues
      2. Thumbnail on demand
      3. Stop thumbnail loading on "new search"
    2. fix query term dependencies
    3. clean up resources
      • jar libraries
      • icons (move to common?)
    4. DataSource view: add subtables foreach datatype
    5. Lookinto extracting BrainGraph Hyperbolic View module
    6. mbat3.0 config.xml / plugin directory structure
    7. build.xml: add svn version to mbat.jar
    1. GENSAT NCBI keyword search
    2. add full query term support
    3. GENSAT image IDs not matching NCBI
    4. QA query term searches
    5. update production server
    6. mbDataSourceBase::getTermMapping()
      1. plugin defines mapping
      2. stored in UMD server (need db ID)
      3. web app to enter term mapping?
    7. mbDataSource.getDefaultColumnDesc()?
    8. plugin sample for local DB
    9. GENSAT download script
    10. mbSecurity: design framework
    11. migrate GN: assign to UT
    1. mbViewer: reimplement as coordinate based
    2. mbViewer: image picking
    3. mbViewer: updated look and feel
    4. mbRegistration: load image from mbManagerCart (BufferedImage)
    5. mbRegistration: save to cart (mbObject?)
    6. mbSearch: SourceResultPanel filter by experimental type
    7. mbat: install4J
    8. mbat: wiki documentation
    9. mbManagerIO: design framework
    10. mbManagerIO: integrate ImageJ plugins
    11. mbViewer: Info tabsheet with annotations
    12. mbViewer: load .atlas and .hdr
    13. mbat: SkinLF - only override subset of UI (keep native tables)
    14. mbRegistration: load atlas slice from mbManagerCart
    15. mbManagerCart: add tooltips
    16. mbManagerCart: add thumbnail preview
    17. mbSearch: add tabsheets for viewing results by datasource/by datatype
    18. BrainGraph: file formats to support?
    1. Zoom: reposition landmarks
    2. Make images resizable to frame
    3. update look and feel
    4. Save to Cart

    4Sep 21CODE FREEZE
    1. Debug & Test
    1. Debug & Test

     <<O>>  Difference Topic LONIMBATSchedule (r1.42 - 09 Sep 2008 - DarenLee)

    		|*META TOPICPARENT*|MouseBIRNProgrammers ||
    Line: 1013 to 1013
    1. Query Results Table
    Changed:
    <
    <
  • Thumbnail view
  • Thumbnails for image series?
  • URL results as hyperlinks
    • >
    >
  • Thumbnail view
  • Thumbnails for image series?
  • URL results as hyperlinks
  • Tooltips bounding box issues

  • fix query term dependencies
  • clean up resources

    •  <<O>>  Difference Topic LONIMBATSchedule (r1.41 - 09 Sep 2008 - DarenLee)

    		|*META TOPICPARENT*|MouseBIRNProgrammers ||
    Line: 974 to 974
  • add full query term support
  • mbDataSourceBase::getTermMapping()
    • Changed:
    <
    <
  • plugin defines mapping
    • >
    >
  • plugin defines mapping

  • stored in UMD server (need db ID)
  • web app to enter term mapping?
    • Line: 1009 to 1009

    SEPTEMBER
    Changed:
    <
    <
    6Sep 07
    >
    >
    6Sep 07
    1. Query Results Table
      1. Thumbnail view
      2. Thumbnails for image series?
      3. URL results as hyperlinks
    2. fix query term dependencies
    3. clean up resources
      • jar libraries
      • icons (move to common?)
    4. DataSource view: add subtables foreach datatype
    5. Lookinto extracting BrainGraph Hyperbolic View module
    6. mbat3.0 config.xml / plugin directory structure
    7. build.xml: add svn version to mbat.jar
    1. GENSAT image IDs not matching NCBI
    2. GENSAT NCBI keyword search
    3. add full query term support
    4. update production server
    5. mbDataSourceBase::getTermMapping()
      1. plugin defines mapping
      2. stored in UMD server (need db ID)
      3. web app to enter term mapping?
    6. mbDataSource.getDefaultColumnDesc()?
    7. plugin sample for local DB
    8. GENSAT download script
    9. mbSecurity: design framework
    10. migrate GN: assign to UT
    1. MacPort: JOGL resolved
    2. mbSearch: added NumImages annotation
    3. mbRegistration: added icons
    4. common: added transformIcon()
    5. mbat: look and feel
    6. mbViewer: Info tabsheet with annotations
    7. mbViewer: load .atlas and .hdr
    8. mbViewer: reimplement as coordinate based
    9. mbViewer: image picking
    10. mbManagerIO: design framework
    11. mbManagerIO: integrate ImageJ plugins
    12. mbRegistration: load image from mbManagerCart (BufferedImage)
    13. mbRegistration: save to cart (mbObject?)
    14. mbSearch: SourceResultPanel filter by experimental type
    15. mbat: install4J
    16. mbat: SkinLF - only override subset of UI (keep native tables)
    17. mbRegistration: load atlas slice from mbManagerCart
    18. mbManagerCart: add tooltips
    19. mbManagerCart: add thumbnail preview
    20. mbSearch: add tabsheets for viewing results by datasource/by datatype
    21. BrainGraph: file formats to support?
    1. Zoom: reposition landmarks
    2. Make images resizable to frame
    3. Save to Cart

    5Sep 14
    4Sep 21CODE FREEZE
    1. Debug & Test

     <<O>>  Difference Topic LONIMBATSchedule (r1.40 - 06 Sep 2008 - DarenLee)

    		|*META TOPICPARENT*|MouseBIRNProgrammers ||
    Line: 969 to 969
    1. datasource config info (plugin.xml?)
    Added:
    >
    >
  • GENSAT image IDs not matching NCBI
  • GENSAT NCBI keyword search

  • add full query term support
  • mbDataSourceBase::getTermMapping()
    • Line: 996 to 998
  • mbManagerCart: add thumbnail preview
  • mbSearch: SourceResultPanel filter by experimental type
  • mbSearch: add tabsheets for viewing results by datasource/by datatype
    • Added:
    >
    >
  • BrainGraph: file formats to support?

    1. Add metadata for images

     <<O>>  Difference Topic LONIMBATSchedule</