• 2009 MBAT 3.0 beta released (5/2009)
  • download at: http://mbat.loni.ucla.edu/

• The Mouse BIRN All Hands Meeting 2009 -Santa Barbara, May 21-22

• The 2008 Mouse BIRN All Paws Meeting held in Santa Barbara, May 29-30th

Upcoming Meetings

• The 2008 Mouse BIRN All Paws Meeting held in Santa Barbara, May 29-30th

• SfN 2007 at San Diego
• The 2007 BIRN AHM at Bethesda Maryland

• The 2007 BIRN AHM at Bethesda Maryland

• The Mouse BIRN 2007 June Programmers meeting
• The 2007 Mouse BIRN AHM held at UCLA, LONI, March 8-9

• The Mouse BIRN 2007 June Programmers meeting

• The 2007 Mouse BIRN AHM will be held at UCLA, LONI, March 8-9

Important Dates for Mouse BIRN

• BIRN Executive Committee report due January 23rd, 2007

• The 2007 Mouse BIRN AHM will be held at UCLA, LONI, March 8-9

Important Dates for Mouse BIRN

• 2007 NIH Progress Report due February 2007
• Mouse BIRN 3 year Council Review: November 2007

• The 2007 Mouse BIRN AHM will be held at UCLA, LONI, March 8-9

Previous Meetings

• Go to this page for information about previous BIRN-related meetings

• Neurology Today Article, April 06: Press article including mouse BIRN activities

• 2006 Mouse BIRN Atlasing Toolkit (MBAT) beta 1.1.0: (10/2006)
  • The software tool and data can be downloaded at http://nbirn.net/downloads/mbat/index.shtm

• • PARKING: ALL need to stop at the Parking Kiosk (see map), tell them you are going to the mouse BIRN meeting and you are to park in PSV. They will give you the proper parking permits.

• • • MBAT programmers meeting June 1-2 (afternoon)
      • Thursday in NRB room 470 (same building as LONI)
      • Friday in the DIVE of LONI (see map below)

• Download a template for slide presentations
  • template_blue.ppt: Slide template: blue background
  • template_white.ppt: Slide template: white background

• Go to Mouse BIRN toolsfor tools offered by each of our sites

• • PARKING: ALL need to stop at the Parking Kiosk (see map) for the proper parking permits

Press

• Neurology Today Article, April 06: Press article including mouse BIRN activities

• • More information and the schedule for this meeting can be found here
  • REGISTER for this meeting and these satellite meetings
    • Mouse BIRN meeting May 30-31 held on the Covel Commons Grand Horizons Salon A (see map below)
    • MBAT programmers meeting June 1-2 (afternoon) held in LONI T room (see map below)
    • Ontology working group meeting June 1 held in NRB room 468 (same building as LONI-see map below)
  • Map of campus, meeting locations, and area hotels
  • Attendees are responsible for parking fees and alcohol at Tuesday night's dinner

• • Logistics posting board

• • • campusmap_hotels.pdf: map of meeting locations and area hotels
    • Mouse BIRN meeting May 30-31 held on the Covel Commons Grand Horizons Salon A (see map above)
    • MBAT programmers meeting June 1-2 (afternoon) held in LONI T room (see map above)
    • Ontology working group meeting June 1 held in NRB room 468 (same building as LONI-see map above)
  • Additional visitor information to LONI

• Go to Mouse BIRN toolsfor tools offered by each of our sites

Meetings

Upcoming Meetings

• MouseBIRN 2006 mouse AHM: The mouse BIRN group will hold their all Mouse BIRN meeting this upcoming May 30-31 at UCLA.
  • More information about this meeting can be found here
  • REGISTER for this meeting and these satellite meetings

• • Visitor information to LONI

Link to Previous Meetings

Software Release Announcements

• 2005 Mouse BIRN Atlasing Toolkit (MBAT) beta release: (11/2005)
  • The mouse BIRN is pleased to announce the beta release of the interoperable Mouse BIRN Atlasing Toolkit (MBAT).
  • It can be downloaded at BIRN
• Pipeline Version 3: (12 June 2005)
  • The Laboratory of NeuroImaging (LONI) is pleased to announce the client beta release of the LONI Pipeline Processing Environment v3.
  • Please visit http://pipeline.loni.ucla.edu for more information and instructions to download the software.

More information about this meeting can be found here.

REGISTER for this meeting and these satellite meetings

• Mouse BIRN meeting May 30-31
• MBAT programmers meeting June 1-2 (afternoon)
• Ontology working group meeting June 1

2006 Spring Brain Conference (SBC)

• Organizer: Randy L. Gollub, Harvard Univ.
• Speakers:
  • Christine Fennema-Notestine, UCSD
  • Jessica Turner, UC Irvine
  • Jyl Boline, UCLA. SBC_MOUSE_BIRN.pdf: Mouse BIRN presentation in PDF format

2006 Morph BIRN AHM

2006 Function BIRN AHM

• Click here for information about the atlasing workshop Thursday October 20th, and here for notes from the workshop.

2006 Function BIRN AHM

Meetings

2006 Morph BIRN AHM

Software Release Announcements

Meetings

Upcoming Meetings

MouseBIRN 2006 mouse AHM:

Previous Meetings

2005 Mouse BIRN at Society for Neuroscience: 11/19/2005

The BIRN group had a booth at the meeting. The schedule for the booth can be found here.

MouseBIRN 2004 mouse AHM^?:

Software Release Announcements

2005 Mouse BIRN Atlasing Toolkit (MBAT) beta release: 11/2005

Pipeline Version 3: 12 June 2005

Mouse BIRN News and Events

MouseBIRN 2006 mouse AHM:

2005 Mouse BIRN Atlasing Toolkit (MBAT) beta release: 11/2005

• MouseBIRN.pdf: Overview of mouse test bed news as of 11/05

BIRN 2005 AHM wrap up:

BIRN 2005 AHM:

2005 Mouse BIRN at Society for Neuroscience: 11/19/2005

Information presented about some of the mouse BIRN news and offerings can be found in this PDF file:

• MouseBIRN.pdf: Overview of mouse test bed news

• Click here for a detailed schedule of the AHM.

2005 Society for Neuroscience:

• Click here for a detailed schedule.

• Click here for the Mouse BIRN test bed schedule for Monday October 17th.

• Click here for information about the atlasing workshop Thursday October 20th.

The test bed working sessions will be held Monday, the cross bed working sessions Tuesday and Wednesday, and additional sessions and activities are planned for Thursday. More information is on the link above, feel free to input what sorts of things you'd like to have at the meeting.

BIRN 2005 AHM:

Software Release Announcement:

12 June 2005

The Laboratory of NeuroImaging (LONI) is pleased to announce the client beta release of the LONI Pipeline Processing Environment v3.

Please visit http://pipeline.loni.ucla.edu for more information and instructions to download the software.

MouseBIRN 2004 mouse AHM^?:

• 2005mAHMschedule3.doc: Proposed meeting schedule as of 5/25

• 2005mAHMschedule3.pdf: PDF of proposed schedule 5/25

• 2005mAHMschedule2.doc: Proposed Schedule as of 5/20 (Word Document)

• 2005mAHMschedule2.pdf: PDF of above file

PRESENTATION TEMPLATES

• 2005mAHMschedule5_4.doc: Proposed Schedule (Word Document)

• 2005mAHMschedule5_4.pdf: PDF of proposed schedule

GOALS OF THE WORKSHOP

PROPOSED MEETING SCHEDULE

• 2005mAHMschedule5_4.doc: Proposed Schedule

LOGISTICS

MouseBIRN Meeting Logistics

Information about the mouse BIRN AHM and a place to post for sharing of rooms/rides/etc.

• • Register at: http://www.surveymonkey.com/s.asp?u=14629986526, last day to register is Tuesday, May 10th.

MouseBIRN Meeting Logistics

Information about the mouse BIRN AHM and a place to post for sharing of rooms/rides/etc.

• • Register at: http://www.surveymonkey.com/s.asp?u=14629986526

The suggested agenda items can be edited directly in this wiki. Just click edit and add your changes. Please add a comment to the changes you made (i.e. your name).

SUGGESTED 2005 MOUSE AHM AGENDA

Review the current suggested agenda items and suggest changes, and please comment your suggestions. The general idea is to start with what Mouse BIRN is about, revisit our goals from the BIRN AHM, and then go into specific accomplishments (scientific/technical) and how things are organized. We will also plan on workshops and demos and finish with each of the workgroups presenting their action items.

Goals of the Workshop

• Review progress on mouse BIRN milestones
• Update priorities and milestones for Oct. 2005 and next spring 2006
• Clarify and review plans of action
• Identify specific manuscripts with work-to-be-done and authorship
• Develop action items related to combined atlas effort and name beta testers outside BIRN
• Foster interactions and communications between different research and technical groups within the mouse BIRN

Below are some suggested agenda items, who will present it, approximate time, and who suggested it. Please feel free to add items, suggestions, and comments to current items.

SUGGESTED AGENDA ITEM /WHO'S PRESENTING / TIME /WHO SUGGESTED THIS ITEM

• What is Mouse BIRN, what is our status, and goals for this meeting / Arthur Toga / 30 min /
• Revisit priorities and milestones presented at Oct. 2005 meetings / Arthur Toga / 15 min /

Progress Items: (Most likely this will take most of the first day)

• Data Management:
  • Acquisition-Priorities for the 2 MRI efforts, respective responsibilities, times lines etc / Duke and CIT / 15 min / Arthur Toga
  • Access and management / ? / 15 min /
  • Expansion / ? / 15 min /
  • Software Integration / ? / 15 min /

• Tools:
  • Registration / ? / 15 min /
  • Segmentation / ? / 15 min /
  • Atlasing / ? / 15 min /
  • New Features and priorities / ? / 15 min / Arthur Toga
  • Identify Specific modules and responsible developers / ? / 15 min / Arthur Toga
  • Visualization / ? / 15 min /
  • Data mediation / BIRN CC / 15 min /
  • BIRN CC specific tools / BIRN CC / 15 min /

• Mouse BIRN research/collaborations/projects:
  • Alpha Syn / Diana Price / 20 min / Jyl
  • EAE / Allan Mackenzie-Graham / 20 min / Jyl
  • Alzheimer’s / Russ’ group? / 20 min / Rob

• New Mouse BIRN participants
  • U Tennessee related activities / Rob Williams / 20 min / Rob
  • Drexel related activities / Yoni Nissanov / 20 min / Rob

• Outside collaborations:
  • GENSAT /Mark/Maryann/Arthur /20 min

Mouse BIRN working items: (probably the second day?)

• Workgroup related discussions:
  • Mission/vision of workgroup / each workgroup / 15 min /
  • Workplans of workgroup / each workgroup / 15 min /
  • Immediate action items of workgroup / each workgroup / 15 min /

• Workshops and demos:
  • Hands-on demos (work through it with guidance) / ? / ? / Diana
  • Pipeline / Michael Pan/AMG / ? /
  • Smart Atlas / ? / ? /
  • BIRN Portal/tools / ? / ? /

• General Mouse BIRN discussions:
  • Discussion of mouse BIRN visibility / ? / 30 min /
  • Discussion of mouse BIRN expansion / ? / 30 min /
  • Discussion of mouse BIRN progress and obstacles to progress / ? / 30 min /

• Mouse BIRN plans for the future:
  • Workgroup Action Items /Each WG leader /20 min each/

Potential agenda items can also be edited or added by saving the most recent document to your computer, adding your changes, and uploading your revised file by clicking the manage action. Within that window you can upload your local file with a comment.

• Potential agenda items can be edited or added by saving the most recent document to your computer, adding your changes, and uploading your revised file by clicking the manage action. Within that window you can upload your local file with a comment.

Upcoming Mouse All Hands meeting

• Meeting information
  • Dates: Tuesday May 31-Wednesday June 1
  • Location: UCLA Laboratory of Neuro Imaging (LONI)

• Potential agenda items can be edited or added by saving the file below to your computer, making changes, and uploading the revised file

Mouse BIRN News and Events