|
Return to Mouse BIRN Announcements Page
|
|
- PARKING: ALL need to stop at the Parking Kiosk (see map), tell them you are going to the Mouse BIRN meeting and you are to park in PSV on Thursday and Friday (8th-9th) for the AHM and Parking lot 9 for the satellite meetings on Wednesday (7th), Monday and Tuesday (12th-13th). They will give you the proper parking permits.
|
|
>
> |
|
|
Schedule as of January 18 2007
Download a PDF of the schedule 2007mAHMschedule.pdf
|
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|
|
<
< |
|
|
| META FILEATTACHMENT | 2007mAHMschedule.pdf | attr="" comment="PDF of schedule" date="1172617912" path="2007 mAHM schedule.pdf" size="10526" user="jboline" version="1.2" |
|---|
| META FILEATTACHMENT | Menu.doc | attr="" comment="menu for the meeting" date="1173122483" path="Menu.doc" size="54784" user="jboline" version="1.1" |
|---|
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|
>
> |
| META FILEATTACHMENT | template_black.ppt | attr="" comment="PowerPoint Template" date="1173228614" path="template_black.ppt" size="222720" user="jboline" version="1.1" |
|---|
|
|
Return to Mouse BIRN Announcements Page
|
|
|
|
<
< |
| Databases for Query with this Infrastructure |
|
|
|
|
<
< |
| 3:30 PM-4:30 PM | Mapping to Mediated Queries using Ontologies | Amarnath, Bill, Vadim, Maryann |
|
>
> |
| 3:30 PM-4:30 PM | Databases and Next Plans for Query with this Infrastructure | Jeff, Ilya |
|
|
| 4:30 PM-5:00 PM | Review of Action Items and Timelines | Maryann, Ilya, Arthur/Jyl |
|
|
Return to Mouse BIRN Announcements Page
|
|
- Mouse BIRN meeting Thursday and Friday March 8-9th held on the Covel Commons Grand Horizons Salon A (see map below)
- MBAT programmers meeting will be held Monday and Tuesday the following week, March 12-13th
- in NRB (same building as LONI)
|
|
<
< |
- Mouse-specific Ontology working group meeting Wednesday March 7th
|
>
> |
- Mouse-specific Ontology working group meeting Wednesday March 7th in NRB 468 (same building as LONI)
|
|
- Map of campus, meeting locations, and area hotels
- Attendees are responsible for parking fees and alcohol at Thursday's dinner
|
|
<
< |
- PARKING: ALL need to stop at the Parking Kiosk (see map), tell them you are going to the Mouse BIRN meeting and you are to park in PSV. They will give you the proper parking permits.
|
>
> |
- PARKING: ALL need to stop at the Parking Kiosk (see map), tell them you are going to the Mouse BIRN meeting and you are to park in PSV on Thursday and Friday (8th-9th) for the AHM and Parking lot 9 for the satellite meetings on Wednesday (7th), Monday and Tuesday (12th-13th). They will give you the proper parking permits.
|
|
Schedule as of January 18 2007
|
|
Return to Mouse BIRN Announcements Page
|
|
| March 7, 2007 |
|---|
| Mouse Ontology Working Day |
|
|
>
> |
|
|
| 9:00 AM - 5:00 PM | Inter-Atlas Anatomy |
|
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<
< |
|
>
> |
|
|
| Behavioral Paradigms |
| Review Ontology Tools for BIRN |
|
|
| 12:15 AM-1:45 PM | LUNCH and Demos of BIRN Atlases |
| 1:45 PM-3:15 PM | Data Query Session | Vadim, Brian, Jeff, Steve |
| New Tools for mapping and retrieving data via the Mediator |
|
|
<
< |
|
>
> |
|
|
| Queries, MBAT and the Mediator |
| Databases for Query with this Infrastructure |
| 3:15 PM-3:30 PM | BREAK |
|
|
| March 12, 2007-Programmers Meeting |
|---|
|
|
>
> |
|
|
| 9:00 AM - 10:30 AM | AHM follow-up discussion and image architecture planning |
| 10:30 AM - 10:45 AM | BREAK |
| 10:45 AM - 12:15 PM | Plans for Atlas Inter-Op Server |
|
|
| March 13, 2007-Programmers Meeting |
|---|
|
|
>
> |
|
|
| 9:00 AM - 11:00 AM | BIRN CC Data Integration, common upload modules and resource allocation |
| 11:00 AM - 11:15 AM | BREAK |
| 11:15 AM - 12:15 PM | Hardware Resources Discussion |
|
|
Return to Mouse BIRN Announcements Page
|
|
| 10:30 AM-10:45 AM | BREAK |
| 10:45 AM-12:15 PM | Atlas Interoperability Session | Ilya |
| 12:15 AM-1:45 PM | LUNCH and Demos of BIRN Atlases |
|
|
<
< |
| 1:45 PM-3:15 PM | Data Query Session | Vadim, Brian, Jeff |
|
>
> |
| 1:45 PM-3:15 PM | Data Query Session | Vadim, Brian, Jeff, Steve |
|
|
| New Tools for mapping and retrieving data via the Mediator |
| General BIRN Queries |
| Queries, MBAT and the Mediator |
|
|
|
|
<
< |
| META FILEATTACHMENT | 2007mAHMschedule.pdf | attr="" comment="PDF of schedule" date="1172608597" path="2007 mAHM schedule.pdf" size="10516" user="jboline" version="1.1" |
|---|
|
>
> |
| META FILEATTACHMENT | 2007mAHMschedule.pdf | attr="" comment="PDF of schedule" date="1172617912" path="2007 mAHM schedule.pdf" size="10526" user="jboline" version="1.2" |
|---|
|
|
Return to Mouse BIRN Announcements Page
|
|
Schedule as of January 18 2007
|
|
<
< |
Download a PDF of the schedule
|
>
> |
Download a PDF of the schedule 2007mAHMschedule.pdf:
|
|
| March 7, 2007 |
|---|
| Mouse Ontology Working Day |
| 9:00 AM - 5:00 PM | Inter-Atlas Anatomy |
|
|
| 8:30 AM | BREAKFAST |
| 9:00 AM-10:00 AM | What we did and what we will do | PIs |
| RESEARCH MODEL SESSION |
|---|
|
|
<
< |
| 10:00 AM-10:30 AM | Research models progress/plans | Diana, Allan, Joanna, Al/Alex, Rob |
|
>
> |
| 10:00 AM-10:30 AM | Research models progress/plans | Diana, Allan, Joanna, Al/Alex, Rob, Daniel |
|
|
| 10:30 AM-12:45 PM | Poster Sessions with Lunch |
| 12:45 PM-1:15 PM | Group Discussion and Review of Modified Plans for Research Models |
| DATA UPLOAD SESSION |
|---|
|
|
| 10:30 AM - 10:45 AM | BREAK |
| 10:45 AM - 12:15 PM | Plans for Atlas Inter-Op Server |
| 12:15 PM - 1:00 PM | Lunch |
|
|
<
< |
| 1:00 PM - 2:15 PM | Parallel Sessions |
|
>
> |
| 1:00 PM - 2:00 PM | Plans for other web-based servers |
| 2:00 PM - 3:30 PM | Parallel Sessions |
|
|
| Portal-based gene expression server | Warping tools (Erh-Fang's tool and Jibber) |
|
|
<
< |
| 2:30 PM - 3:30 PM | Plans for other web-based servers |
|
|
| 3:30 PM-3:45 PM | BREAK |
| 3:45 PM - 5:00 PM | Individual implementation problems/testcode/debugging |
|
|
|
|
<
< |
| META FILEATTACHMENT | 2007mAHMschedule_3.pdf | attr="" comment="PDF of meeting" date="1169511149" path="2007 mAHM schedule_3.pdf" size="9472" user="jboline" version="1.1" |
|---|
|
>
> |
| META FILEATTACHMENT | 2007mAHMschedule.pdf | attr="" comment="PDF of schedule" date="1172608597" path="2007 mAHM schedule.pdf" size="10516" user="jboline" version="1.1" |
|---|
|
|
Return to Mouse BIRN Announcements Page
|
|
| 4:30 PM-5:00 PM | Review of Action Items and Timelines | Maryann, Ilya, Arthur/Jyl |
|
|
<
< |
| March 12, 2007 |
|---|
| 9:00 AM - 5:00 PM | Programmers Meeting |
|
>
> |
| March 12, 2007-Programmers Meeting |
|---|
| 9:00 AM - 10:30 AM | AHM follow-up dicsussion |
| 10:30 AM - 10:45 AM | BREAK |
| 10:45 AM - 12:15 PM | Plans for Atlas Inter-Op Server |
| 12:15 PM - 1:00 PM | Lunch |
| 1:00 PM - 2:15 PM | Parallel Sessions |
| Portal-based gene expression server | Warping tools (Erh-Fang's tool and Jibber) |
| 2:30 PM - 3:30 PM | Plans for other web-based servers |
| 3:30 PM-3:45 PM | BREAK |
| 3:45 PM - 5:00 PM | Individual implementation problems/testcode/debugging |
| March 13, 2007-Programmers Meeting |
|---|
| 9:00 AM - 11:00 AM | BIRN CC Data Integration, common upload modules and resource allocation |
| 11:00 AM - 11:15 AM | BREAK |
| 11:15 AM - 12:15 PM | Hardware Resources Discussion |
| 12:15 PM - 1:15 PM | Lunch |
| 1:15 PM - 5:00 PM | Detailed Focus on Atlas Interoperability and Gene Expression Servers, Individual meetings |
|
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|
<
< |
| March 13, 2007 |
|---|
| 9:00 AM - 5:00 PM | Programmers Meeting |
|
|
Topics for the Programmers meeting include:
- Review of specs and requirements gathered at the AHM
|
|
Return to Mouse BIRN Announcements Page
|
|
| 10:30 AM-12:45 PM | Poster Sessions with Lunch |
| 12:45 PM-1:15 PM | Group Discussion and Review of Modified Plans for Research Models |
| DATA UPLOAD SESSION |
|---|
|
|
<
< |
| 1:15 PM-2:45 PM | Registration Workflow Session | Asif and Ilya, Allan/Alex |
|
>
> |
| 1:15 PM-2:45 PM | Registration Workflow Session |
| 2D Workflow | Asif and Ilya |
| 3D Workflow | Allan and Alex |
| Integration of Registration Workflows with BIRN Infrastructure | Ilya and Bill |
|
|
|
|
<
< |
| 3:00 PM-5:00 PM | PARALLEL SESSIONS |
| Users | DB group |
|
>
> |
| 3:00 PM-5:00 PM | Data Federation Working Session, users and DB group separate? | Bill |
| XCEDE for images, MAGE for microarray GE, Upload Scripts and SRB hierarchy/metadata |
|
|
| 5:00 PM-6:30 PM | Socializing/Happy Hour |
| 7:00 PM-9:00 PM | DINNER: Napa Valley Grille |
|
|
| 10:30 AM-10:45 AM | BREAK |
| 10:45 AM-12:15 PM | Atlas Interoperability Session | Ilya |
| 12:15 AM-1:45 PM | LUNCH and Demos of BIRN Atlases |
|
|
<
< |
| 1:45 PM-3:15 PM | Data Query Session | Vadim, Brian |
| New Tool for Mapping Data to Ontology |
| Discovery Tool for Retrieving Mapped Data using the Mediator |
| General BIRN Queries and Interaction with the Mediator |
|
>
> |
| 1:45 PM-3:15 PM | Data Query Session | Vadim, Brian, Jeff |
| New Tools for mapping and retrieving data via the Mediator |
| General BIRN Queries |
| Queries, MBAT and the Mediator |
| Databases for Query with this Infrastructure |
|
|
| 3:15 PM-3:30 PM | BREAK |
| 3:30 PM-4:30 PM | Mapping to Mediated Queries using Ontologies | Amarnath, Bill, Vadim, Maryann |
| 4:30 PM-5:00 PM | Review of Action Items and Timelines | Maryann, Ilya, Arthur/Jyl |
|
|
Return to Mouse BIRN Announcements Page
|
|
| 10:30 AM-10:45 AM | BREAK |
| 10:45 AM-12:15 PM | Atlas Interoperability Session | Ilya |
| 12:15 AM-1:45 PM | LUNCH and Demos of BIRN Atlases |
|
|
<
< |
| 1:45 PM-3:15 PM | Data Query Session | Vadim, Amarnath |
|
>
> |
| 1:45 PM-3:15 PM | Data Query Session | Vadim, Brian |
| New Tool for Mapping Data to Ontology |
| Discovery Tool for Retrieving Mapped Data using the Mediator |
| General BIRN Queries and Interaction with the Mediator |
|
|
| 3:15 PM-3:30 PM | BREAK |
| 3:30 PM-4:30 PM | Mapping to Mediated Queries using Ontologies | Amarnath, Bill, Vadim, Maryann |
| 4:30 PM-5:00 PM | Review of Action Items and Timelines | Maryann, Ilya, Arthur/Jyl |
|
|
Return to Mouse BIRN Announcements Page
|
|
Milestones for the meeting
|
|
<
< |
REGISTER for the 2007 Mouse BIRN All Hands Meeting
|
>
> |
Go here to REGISTER for the 2007 Mouse BIRN All Hands Meeting
|
|
Need to share rides to the Airport or get suggestions about the best hotels or restaurants? Go here to post comments about logistics for the meeting
|
|
| DATA INTEGRATION DAY |
|---|
| 9:00 AM-10:30 AM | BIRNLex-how and when to use it | Maryann |
| 10:30 AM-10:45 AM | BREAK |
|
|
<
< |
| 10:45 AM-12:15 PM | Atlas Interoperability | Ilya |
|
>
> |
| 10:45 AM-12:15 PM | Atlas Interoperability Session | Ilya |
|
|
| 12:15 AM-1:45 PM | LUNCH and Demos of BIRN Atlases |
| 1:45 PM-3:15 PM | Data Query Session | Vadim, Amarnath |
| 3:15 PM-3:30 PM | BREAK |
|
|
Return to Mouse BIRN Announcements Page
|
|
| 4:30 PM-5:00 PM | Review of Action Items and Timelines | Maryann, Ilya, Arthur/Jyl |
|
|
<
< |
| March 12, 2007 |
|---|
| Programmers Meeting |
|
>
> |
| March 12, 2007 |
|---|
| 9:00 AM - 5:00 PM | Programmers Meeting |
|
|
|
|
>
> |
| March 13, 2007 |
|---|
| 9:00 AM - 5:00 PM | Programmers Meeting |
|
|
|
|
<
< |
| March 13, 2007 |
|---|
| Programmers Meeting |
|
>
> |
Topics for the Programmers meeting include:
- Review of specs and requirements gathered at the AHM
- Integration of Registration workflows:
- 2D workflow, including Erh-Fang's registration tool with Jibber
- Gene Expression Data upload
- BIRN Gene Expression Database efforts
- Atlas Interoperability and Server
|
|
|
|
Return to Mouse BIRN Announcements Page
|
|
Schedule as of January 18 2007
|
|
>
> |
| March 7, 2007 |
|---|
| Ontology working Day |
|
|
| March 8, 2007 |
|---|
| 8:30 AM | BREAKFAST |
|
|
| 4:30 PM-5:00 PM | Review of Action Items and Timelines | Maryann, Ilya, Arthur/Jyl |
|
|
>
> |
| March 12, 2007 |
|---|
| Programmers Meeting |
| March 13, 2007 |
|---|
| Programmers Meeting |
|
|
|
|
>
> |
|
|
|
|
>
> |
| META FILEATTACHMENT | 2007mAHMschedule_2.pdf | attr="" comment="PDF of the schedule" date="1169152344" path="2007 mAHM schedule_2.pdf" size="9931" user="jboline" version="1.1" |
|---|
|
|
Return to Mouse BIRN Announcements Page
|
|
This meeting will be held at UCLA
- Mouse BIRN meeting Thursday and Friday March 8-9th held on the Covel Commons Grand Horizons Salon A (see map below)
|
|
<
< |
- MBAT programmers meeting March (TBD)
|
>
> |
- MBAT programmers meeting will be held Monday and Tuesday the following week, March 12-13th
|
|
-
- in NRB (same building as LONI)
- Mouse-specific Ontology working group meeting Wednesday March 7th
- Map of campus, meeting locations, and area hotels
|
|
- PARKING: ALL need to stop at the Parking Kiosk (see map), tell them you are going to the Mouse BIRN meeting and you are to park in PSV. They will give you the proper parking permits.
|
|
<
< |
Schedule as of December 19 2006
|
>
> |
Schedule as of January 18 2007
|
|
| March 8, 2007 |
|---|
| 8:30 AM | BREAKFAST |
|
|
Return to Mouse BIRN Announcements Page
Milestones for the meeting
|
|
<
< |
- Hierarchy finalized and data in
- Mark up of data bases done
- Integration of Maryann’s Common specimen delineations into MBAT
- MRI and Paxinos delineations better registered
- Registration across atlasing efforts (Drexel, UCSD, UCLA)
- Alignment of different data sets from Common specimen study
- Mediator-functioning system
- Atlas server up and being used
|
>
> |
|
|
REGISTER for the 2007 Mouse BIRN All Hands Meeting
|
|
This meeting will be held at UCLA
-
- Mouse BIRN meeting Thursday and Friday March 8-9th held on the Covel Commons Grand Horizons Salon A (see map below)
|
|
<
< |
-
- MBAT programmers meeting March 6-7
|
>
> |
- MBAT programmers meeting March (TBD)
|
|
-
-
- in NRB (same building as LONI)
|
|
<
< |
-
- Ontology working group meeting
|
>
> |
- Mouse-specific Ontology working group meeting Wednesday March 7th
|
|
-
- Map of campus, meeting locations, and area hotels
- Attendees are responsible for parking fees and alcohol at Thursday's dinner
|
|
<
< |
-
- PARKING: ALL need to stop at the Parking Kiosk (see map), tell them you are going to the mouse BIRN meeting and you are to park in PSV. They will give you the proper parking permits.
|
>
> |
- PARKING: ALL need to stop at the Parking Kiosk (see map), tell them you are going to the Mouse BIRN meeting and you are to park in PSV. They will give you the proper parking permits.
|
|
Schedule as of December 19 2006
| March 8, 2007 |
|---|
| 8:30 AM | BREAKFAST |
|
|
<
< |
| 8:45 AM-9:45 AM | What we did and what we will do | PIs |
| 9:45 AM-10:15 AM | Research models progress/plans | Diana, Allan, Joanna, Al/Alex, Rob |
| 10:15 AM-11:00 AM | Research models Poster session and BREAK |
|
>
> |
| 9:00 AM-10:00 AM | What we did and what we will do | PIs |
| RESEARCH MODEL SESSION |
|---|
| 10:00 AM-10:30 AM | Research models progress/plans | Diana, Allan, Joanna, Al/Alex, Rob |
| 10:30 AM-12:45 PM | Poster Sessions with Lunch |
| 12:45 PM-1:15 PM | Group Discussion and Review of Modified Plans for Research Models |
| DATA UPLOAD SESSION |
|---|
| 1:15 PM-2:45 PM | Registration Workflow Session | Asif, Allan/Alex |
| 2:45 PM-3:00 PM | BREAK |
| 3:00 PM-5:00 PM | PARALLEL SESSIONS |
| Users | DB group |
| 5:00 PM-6:30 PM | Socializing/Happy Hour |
| 7:00 PM-9:00 PM | DINNER: Napa Valley Grille |
|
|
|
|
<
< |
| 5:00 PM-6:00 PM | Speaker |
|---|
| 7:00 PM-9:00 PM | DINNER: Napa Valley Grille |
|
|
| March 9, 2007 |
|---|
| 8:30 AM | BREAKFAST |
|
|
>
> |
| DATA INTEGRATION DAY |
|---|
| 9:00 AM-10:30 AM | BIRNLex-how and when to use it | Maryann |
| 10:30 AM-10:45 AM | BREAK |
| 10:45 AM-12:15 PM | Atlas Interoperability | Ilya |
| 12:15 AM-1:45 PM | LUNCH and Demos of BIRN Atlases |
| 1:45 PM-3:15 PM | Data Query Session | Vadim, Amarnath |
| 3:15 PM-3:30 PM | BREAK |
| 3:30 PM-4:30 PM | Mapping to Mediated Queries using Ontologies | Amarnath, Bill, Vadim, Maryann |
| 4:30 PM-5:00 PM | Review of Action Items and Timelines | Maryann, Ilya, Arthur/Jyl |
|
|
|
|
|
|
<
< |
|
|
Return to Mouse BIRN Announcements Page
|
|
Schedule as of December 19 2006
|
|
<
< |
| 8:30 AM-9:00 AM | BREAKFAST |
|
>
> |
| 8:30 AM | BREAKFAST |
| 8:45 AM-9:45 AM | What we did and what we will do | PIs |
| 9:45 AM-10:15 AM | Research models progress/plans | Diana, Allan, Joanna, Al/Alex, Rob |
| 10:15 AM-11:00 AM | Research models Poster session and BREAK |
|
|
| 5:00 PM-6:00 PM | Speaker |
|---|
| 7:00 PM-9:00 PM | DINNER: Napa Valley Grille |
|
|
<
< |
| 8:30 AM-9:00 AM | BREAKFAST |
|
>
> |
|
|
|
