(r1.1 vs. r1.8) FileFormats < SHIVA

SHIVA.FileFormats (r1.1 vs. r1.8)

Diffs

<<O>> Difference Topic FileFormats (r1.8 - 12 Apr 2007 - Main.HengYuan)

META TOPICPARENT	DOC

File Formats

Line: 24 to 24

- - byte (8-bit)
  - short (16-bit)
  - rgb (24-bit)

Added:

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- Biorad PIC (*.pic): http://rsb.info.nih.gov/ij/plugins/biorad.html

- CIVM (*.headfile)
  Big volume is supported.
- Bruker (reco, 2dseq): http://www.mrc-cbu.cam.ac.uk/Imaging/Common/brukerformat.shtml

<<O>> Difference Topic FileFormats (r1.7 - 05 Dec 2006 - Main.HengYuan)

META TOPICPARENT	DOC

File Formats

Line: 16 to 16

- - rgb (24-bit)
  - float (32-bit, converted to short format internally)
- Nifti (*.nii): http://nifti.nimh.nih.gov/nifti-1/

Added:

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SHIVA can only handle Nifti volumes with transformation matrix with scaling and shifting. Other transformations are treated as an identify matrix.

SHIVA can also read GZIP compressed image files (*.nii.gz).

- MINC (*.mnc): http://www.bic.mni.mcgill.ca/software/minc/prog_guide/
  SHIVA can also read GZIP compressed MINC files (*.mnc.gz).

<<O>> Difference Topic FileFormats (r1.6 - 01 Dec 2006 - Main.HengYuan)

META TOPICPARENT	DOC

File Formats

Line: 6 to 6

Image volume files
- Analyze(tm) (*.img, *.hdr): http://www.mayo.edu/bir/PDF/ANALYZE75.pdf

Added:

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Nifti header files are supported.

SHIVA can also read GZIP compressed image files (*.img.gz).

Changed:

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Big volume is supported for uncompressed image files only.

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Big volume is supported for uncompressed image files with byte, short, and rgb formats only.

Currently, SHIVA supports the following file types:

- - binary (1-bit, converted to byte format internally)
  - byte (8-bit)
  - short (16-bit, signed/unsigned)
  - rgb (24-bit)
  - float (32-bit, converted to short format internally)

Added:

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- Nifti (*.nii): http://nifti.nimh.nih.gov/nifti-1/
  SHIVA can also read GZIP compressed image files (*.nii.gz).

- MINC (*.mnc): http://www.bic.mni.mcgill.ca/software/minc/prog_guide/
  SHIVA can also read GZIP compressed MINC files (*.mnc.gz). Currently, SHIVA supports the following file types:

<<O>> Difference Topic FileFormats (r1.5 - 06 Jul 2006 - Main.HengYuan)

  META TOPICPARENT  DOC 

  File Formats
->
>
+The following file formats are currently supported by SHIVA.
  Image volume files

 Analyze(tm) (*.img, *.hdr): http://www.mayo.edu/bir/PDF/ANALYZE75.pdf
-<
<
+        SHIVA can read GZIP compressed image files (*.img.gz).
        SHIVA supports the following file types:
->
>
+        SHIVA can also read GZIP compressed image files (*.img.gz).

        Big volume is supported for uncompressed image files only.

        Currently, SHIVA supports the following file types:
  binary (1-bit, converted to byte format internally)

 byte (8-bit)

 short (16-bit, signed/unsigned)

 rgb (24-bit)
->
>
+ float (32-bit, converted to short format internally)
  MINC (*.mnc): http://www.bic.mni.mcgill.ca/software/minc/prog_guide/
-<
<
+        SHIVA can read GZIP compressed MINC files (*.mnc.gz).
        SHIVA supports the following file types:
->
>
+        SHIVA can also read GZIP compressed MINC files (*.mnc.gz).
        Currently, SHIVA supports the following file types:
  byte (8-bit)

 short (16-bit)

 rgb (24-bit)
-<
<
+ CIVM (*.headfile)
->
>
+ CIVM (*.headfile) 

        Big volume is supported.
  Bruker (reco, 2dseq): http://www.mrc-cbu.cam.ac.uk/Imaging/Common/brukerformat.shtml

 TIFF with two variations

 regular single layer.
-<
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+ ImageJ image stack.
->
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+ ImageJ image stack (all frames are uncompressed).
 D files

 Duff Surface (*.dfs)

 Duff Curve (*.dfc)
  Curve format: http://www.bic.mni.mcgill.ca/~david/FAQ/lines_format.txt



 3D atlas (*.atlas3d)



 Label/BrainGraph files
-<
<
+ Label index file (*.lbl, *.txt)
->
>
+ Label index file (*.lbl, *.txt)
  XML BrainGraph file (*.bgx)

 GML BrainGraph file (*.gml)

 Integrated Label File (*.ilf)

<<O>> Difference Topic FileFormats (r1.4 - 23 Jun 2006 - Main.HengYuan)

META TOPICPARENT	DOC

File Formats

Image volume files

Changed:

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- Analyze(tm) (*.img, *.hdr): http://www.mayo.edu/bir/PDF/ANALYZE75.pdf
- MINC (*.mnc): http://www.bic.mni.mcgill.ca/software/minc/prog_guide/

>
>

- Analyze(tm) (*.img, *.hdr): http://www.mayo.edu/bir/PDF/ANALYZE75.pdf
  SHIVA can read GZIP compressed image files (*.img.gz). SHIVA supports the following file types:
  - binary (1-bit, converted to byte format internally)
  - byte (8-bit)
  - short (16-bit, signed/unsigned)
  - rgb (24-bit)
- MINC (*.mnc): http://www.bic.mni.mcgill.ca/software/minc/prog_guide/
  SHIVA can read GZIP compressed MINC files (*.mnc.gz). SHIVA supports the following file types:
  - byte (8-bit)
  - short (16-bit)
  - rgb (24-bit)

- CIVM (*.headfile)
- Bruker (reco, 2dseq): http://www.mrc-cbu.cam.ac.uk/Imaging/Common/brukerformat.shtml

Added:

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- TIFF with two variations
  - regular single layer.
  - ImageJ image stack.

3D files
- Duff Surface (*.dfs)
- Duff Curve (*.dfc)

<<O>> Difference Topic FileFormats (r1.3 - 21 Jun 2006 - Main.HengYuan)

META TOPICPARENT	DOC

File Formats

Image volume files
- Analyze(tm) (*.img, *.hdr): http://www.mayo.edu/bir/PDF/ANALYZE75.pdf
- MINC (*.mnc): http://www.bic.mni.mcgill.ca/software/minc/prog_guide/

Changed:

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<

- CIVM (*.headfile)

>
>

- CIVM (*.headfile)

- Bruker (reco, 2dseq): http://www.mrc-cbu.cam.ac.uk/Imaging/Common/brukerformat.shtml
3D files
- Duff Surface (*.dfs)
- Duff Curve (*.dfc)

Added:

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- LONI Triangle Model (*.tm)

- LONI UCF (*.ucf)
- Object File Format (*.off): http://shape.cs.princeton.edu/benchmark/documentation/off_format.html

Added:

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- - Geomview Manual: http://www.geomview.org/docs/html/geomview_toc.html#TOC40
  - Binary Format (not supported by SHIVA): http://www.geomview.org/docs/html/geomview_33.html#SEC36

- MNI OBJ files (*.obj): http://www.bic.mni.mcgill.ca/~david/FAQ/FAQ.html
  - Surface format: http://www.bic.mni.mcgill.ca/~david/FAQ/polygons_format.txt
  - Curve format: http://www.bic.mni.mcgill.ca/~david/FAQ/lines_format.txt

<<O>> Difference Topic FileFormats (r1.2 - 21 Jun 2006 - Main.HengYuan)

META TOPICPARENT	DOC

File Formats

Line: 11 to 11

- Duff Surface (*.dfs)
- Duff Curve (*.dfc)
- LONI UCF (*.ucf)

Added:

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- Object File Format (*.off): http://shape.cs.princeton.edu/benchmark/documentation/off_format.html

- MNI OBJ files (*.obj): http://www.bic.mni.mcgill.ca/~david/FAQ/FAQ.html
  - Surface format: http://www.bic.mni.mcgill.ca/~david/FAQ/polygons_format.txt
  - Curve format: http://www.bic.mni.mcgill.ca/~david/FAQ/lines_format.txt

<<O>> Difference Topic FileFormats (r1.1 - 20 Jun 2006 - Main.HengYuan)

Line: 1 to 1

Added:

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META TOPICPARENT	DOC

File Formats

Image volume files
- Analyze(tm) (*.img, *.hdr): http://www.mayo.edu/bir/PDF/ANALYZE75.pdf
- MINC (*.mnc): http://www.bic.mni.mcgill.ca/software/minc/prog_guide/
- CIVM (*.headfile)
- Bruker (reco, 2dseq): http://www.mrc-cbu.cam.ac.uk/Imaging/Common/brukerformat.shtml
3D files
- Duff Surface (*.dfs)
- Duff Curve (*.dfc)
- LONI UCF (*.ucf)
- MNI OBJ files (*.obj): http://www.bic.mni.mcgill.ca/~david/FAQ/FAQ.html
  - Surface format: http://www.bic.mni.mcgill.ca/~david/FAQ/polygons_format.txt
  - Curve format: http://www.bic.mni.mcgill.ca/~david/FAQ/lines_format.txt
- 3D atlas (*.atlas3d)
Label/BrainGraph files
- Label index file (*.lbl, *.txt)
- XML BrainGraph file (*.bgx)
- GML BrainGraph file (*.gml)
- Integrated Label File (*.ilf)
Misc files
- Duff Keg (*.keg, *.atlas)

Topic: FileFormats . { View | Diffs | r1.8 | > | r1.7 | > | r1.6 | More }

Revision r1.1 - 20 Jun 2006 - 23:15 - Main.HengYuan
Revision r1.8 - 12 Apr 2007 - 20:05 - Main.HengYuan