The SHIVA web of TWiki. TWiki is a Web-Based Collaboration Platform for the Corporate World.
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The SHIVA web of TWiki. TWiki is a Web-Based Collaboration Platform for the Corporate World.
en-usCopyright 2009 Laboratory of Neuro Imaging, UCLA.TWiki Administrator [webmaster@loni.ucla.edu]TWiki Administrator [webmaster@loni.ucla.edu]TWikiTWiki.SHIVASHIVA home.SHIVA
http://www.loni.ucla.edu/twiki/bin/view/SHIVA
WebStatistics
http://www.loni.ucla.edu/twiki/bin/view/SHIVA/WebStatistics?t=2009-01-07T16:29Z
Statistics for SHIVA Web Month: Topic views: Topic saves: File uploads: Most popular topic views: Top contributors for topic save and uploads: Jan 2009 1353 0 0 303 ... (last changed by guest)2009-01-07T16:29Zguest1.1040updatedmajorhttp://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/WebStatisticshttp://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/WebStatisticsFileFormats
http://www.loni.ucla.edu/twiki/bin/view/SHIVA/FileFormats?t=2007-04-12T20:05Z
File Formats The following file formats are currently supported by SHIVA. Image volume files Analyze(tm) ( .img, .hdr): http://www.mayo.edu/bir/PDF/ANALYZE75.pdf ... (last changed by HengYuan)2007-04-12T20:05Zheng1.8updatedmajorhttp://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/FileFormatshttp://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/FileFormatsSubversionRepositoryStructure
http://www.loni.ucla.edu/twiki/bin/view/SHIVA/SubversionRepositoryStructure?t=2007-04-11T23:06Z
Subversion Repository Structure The Subversion repository location is svn+ssh://cvs.loni.ucla.edu/cvs/map . The following is the directory structure under trunk/ ... (last changed by HengYuan)2007-04-11T23:06Zheng1.2updatedmajorhttp://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/SubversionRepositoryStructurehttp://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/SubversionRepositoryStructureDOC
http://www.loni.ucla.edu/twiki/bin/view/SHIVA/DOC?t=2007-04-05T18:20Z
Shiva Developer Documentation $ Repository Structure : svn+ssh://cvs.loni.ucla.edu/cvs/map $ Plugin Documentation : For developers who wish to write plugins for SHIVA ... (last changed by HengYuan)2007-04-05T18:20Zheng1.6updatedmajorhttp://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/DOChttp://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/DOCWebHome
http://www.loni.ucla.edu/twiki/bin/view/SHIVA/WebHome?t=2007-03-13T18:16Z
SHIVA $ Manual : http://www.loni.ucla.edu/download/SHIVA/SHIVA MAP.pdf $ Download : Release version $ Developer Documentation : SHIVA documentation for developers ... (last changed by HengYuan)2007-03-13T18:16Zheng1.20updatedmajorhttp://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/WebHomehttp://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/WebHomeServerProtocols
http://www.loni.ucla.edu/twiki/bin/view/SHIVA/ServerProtocols?t=2006-11-11T05:09Z
Server Protocols ArcIMS ArcXML Programmer's Reference Guide for ArcIMS 9.1 Neuroterrain Atlas Server Network Protocols Web Services Description Language (Axis Client ... (last changed by HengYuan)2006-11-11T05:09Zheng1.2updatedmajorhttp://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/ServerProtocolshttp://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/ServerProtocolsUCFFormat
http://www.loni.ucla.edu/twiki/bin/view/SHIVA/UCFFormat?t=2006-07-07T22:53Z
UCF Format Universal Contour Files (UCF) is a format devised at LONI. It is an ascii based file in the following format: Header 384 256 200.000000 200.000000 200 ... (last changed by HengYuan)2006-07-07T22:53Zheng1.2updatedmajorhttp://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/UCFFormathttp://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/UCFFormatTMFormat
http://www.loni.ucla.edu/twiki/bin/view/SHIVA/TMFormat?t=2006-07-07T19:27Z
LONI Triangle Model Format This following description is obtained from LONI ShapeTools edu.ucla.loni.ccb.shapeio.tm.parser.TmAsciiShapeParser. The conventional suffix ... (last changed by CraigSchwartz)2006-07-07T19:27Zcraig1.2updatedmajorhttp://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/TMFormathttp://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/TMFormatLabelIndexFileFormat
http://www.loni.ucla.edu/twiki/bin/view/SHIVA/LabelIndexFileFormat?t=2006-07-06T23:19Z
Label Index File Format Label index files ( .lbl, .txt) are ascii files used by Duff and SHIVA. Each line contains information of the label id, color (optional), ... (last changed by HengYuan)2006-07-06T23:19Zheng1.1updatedmajorhttp://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/LabelIndexFileFormathttp://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/LabelIndexFileFormatWebPreferences
http://www.loni.ucla.edu/twiki/bin/view/SHIVA/WebPreferences?t=2006-06-21T06:43Z
SHIVA Web Preferences The following settings are web preferences of the SHIVA web. These preferences overwrite the site-level preferences in TWIKIWEB . WIKIPREFSTOPIC ... (last changed by HengYuan)2006-06-21T06:43Zheng1.22updatedmajorhttp://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/WebPreferenceshttp://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/WebPreferencesCIVMFormat
http://www.loni.ucla.edu/twiki/bin/view/SHIVA/CIVMFormat?t=2006-06-21T06:36Z
CIVM Format A CIVM image is consisted of a header file and bunch of files each representing a slice. AKAIK the header file resembles brucker image file format. Header ... (last changed by HengYuan)2006-06-21T06:36Zheng1.1updatedmajorhttp://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/CIVMFormathttp://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/CIVMFormatGUI_RC
http://www.loni.ucla.edu/twiki/bin/view/SHIVA/GUI_RC?t=2006-01-06T23:25Z
GUI RC is an XML file which describes what the SHIVA frame should look like. It is written in CookSwing. shiva.ShivaGUI class extends JFrame to have an setter for ... (last changed by HengYuan)2006-01-06T23:25Zheng1.1updatedmajorhttp://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/GUI_RChttp://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/GUI_RCSTART_RC
http://www.loni.ucla.edu/twiki/bin/view/SHIVA/START_RC?t=2006-01-06T23:24Z
STARTUP RC points to an XML list of plugins to be loaded. It should be noted that how SHIVA looks is mainly specified using plugins. It is written in CookXml. shiva ... (last changed by HengYuan)2006-01-06T23:24Zheng1.1updatedmajorhttp://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/START_RChttp://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/START_RCStartConfigure
http://www.loni.ucla.edu/twiki/bin/view/SHIVA/StartConfigure?t=2006-01-06T23:15Z
In shiva.Main class, there are two global class variables START RC and GUI RC which can be changed to point to different resource file locations before shiva.Main ... (last changed by HengYuan)2006-01-06T23:15Zheng1.1updatedmajorhttp://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/StartConfigurehttp://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/StartConfigureShivaConfiguration
http://www.loni.ucla.edu/twiki/bin/view/SHIVA/ShivaConfiguration?t=2006-01-06T23:05Z
SHIVA can be configured to have completely different look and feels. 1. Configure startup resource file location. 1. Configure ToggleComamnds 1. Configure menu 1. ... (last changed by HengYuan)2006-01-06T23:05Zheng1.1updatedmajorhttp://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/ShivaConfigurationhttp://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/ShivaConfigurationPlugin
http://www.loni.ucla.edu/twiki/bin/view/SHIVA/Plugin?t=2006-01-06T22:55Z
Steps to create a plugin 1. Implement shiva.interfaces.ShivaPlugin . 1. Have public final static String PLUGIN DESCRIPTION "Some Description"; in the class. 1. Define ... (last changed by HengYuan)2006-01-06T22:55Zheng1.3updatedmajorhttp://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/Pluginhttp://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/Plugin
TWiki's SHIVA web
http://www.loni.ucla.edu/twiki/bin/view/SHIVA
The SHIVA web of TWiki. TWiki is a Web-Based Collaboration Platform for the Corporate World.en-usCopyright 2009 Laboratory of Neuro Imaging, UCLA.TWiki Administrator [webmaster@loni.ucla.edu]TWiki Administrator [webmaster@loni.ucla.edu]TWikiTWiki.SHIVASHIVA home.SHIVA
http://www.loni.ucla.edu/twiki/bin/view/SHIVA
WebStatistics
http://www.loni.ucla.edu/twiki/bin/view/SHIVA/WebStatistics?t=2009-01-07T16:29Z
Statistics for SHIVA Web Month: Topic views: Topic saves: File uploads: Most popular topic views: Top contributors for topic save and uploads: Jan 2009 1353 0 0 303 ... (last changed by guest)2009-01-07T16:29Zguest1.1040updatedmajorhttp://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/WebStatisticshttp://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/WebStatisticsFileFormats
http://www.loni.ucla.edu/twiki/bin/view/SHIVA/FileFormats?t=2007-04-12T20:05Z
File Formats The following file formats are currently supported by SHIVA. Image volume files Analyze(tm) ( .img, .hdr): http://www.mayo.edu/bir/PDF/ANALYZE75.pdf ... (last changed by HengYuan)2007-04-12T20:05Zheng1.8updatedmajorhttp://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/FileFormatshttp://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/FileFormatsSubversionRepositoryStructure
http://www.loni.ucla.edu/twiki/bin/view/SHIVA/SubversionRepositoryStructure?t=2007-04-11T23:06Z
Subversion Repository Structure The Subversion repository location is svn+ssh://cvs.loni.ucla.edu/cvs/map . The following is the directory structure under trunk/ ... (last changed by HengYuan)2007-04-11T23:06Zheng1.2updatedmajorhttp://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/SubversionRepositoryStructurehttp://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/SubversionRepositoryStructureDOC
http://www.loni.ucla.edu/twiki/bin/view/SHIVA/DOC?t=2007-04-05T18:20Z
Shiva Developer Documentation $ Repository Structure : svn+ssh://cvs.loni.ucla.edu/cvs/map $ Plugin Documentation : For developers who wish to write plugins for SHIVA ... (last changed by HengYuan)2007-04-05T18:20Zheng1.6updatedmajorhttp://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/DOChttp://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/DOCWebHome
http://www.loni.ucla.edu/twiki/bin/view/SHIVA/WebHome?t=2007-03-13T18:16Z
SHIVA $ Manual : http://www.loni.ucla.edu/download/SHIVA/SHIVA MAP.pdf $ Download : Release version $ Developer Documentation : SHIVA documentation for developers ... (last changed by HengYuan)2007-03-13T18:16Zheng1.20updatedmajorhttp://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/WebHomehttp://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/WebHomeServerProtocols
http://www.loni.ucla.edu/twiki/bin/view/SHIVA/ServerProtocols?t=2006-11-11T05:09Z
Server Protocols ArcIMS ArcXML Programmer's Reference Guide for ArcIMS 9.1 Neuroterrain Atlas Server Network Protocols Web Services Description Language (Axis Client ... (last changed by HengYuan)2006-11-11T05:09Zheng1.2updatedmajorhttp://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/ServerProtocolshttp://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/ServerProtocolsUCFFormat
http://www.loni.ucla.edu/twiki/bin/view/SHIVA/UCFFormat?t=2006-07-07T22:53Z
UCF Format Universal Contour Files (UCF) is a format devised at LONI. It is an ascii based file in the following format: Header 384 256 200.000000 200.000000 200 ... (last changed by HengYuan)2006-07-07T22:53Zheng1.2updatedmajorhttp://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/UCFFormathttp://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/UCFFormatTMFormat
http://www.loni.ucla.edu/twiki/bin/view/SHIVA/TMFormat?t=2006-07-07T19:27Z
LONI Triangle Model Format This following description is obtained from LONI ShapeTools edu.ucla.loni.ccb.shapeio.tm.parser.TmAsciiShapeParser. The conventional suffix ... (last changed by CraigSchwartz)2006-07-07T19:27Zcraig1.2updatedmajorhttp://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/TMFormathttp://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/TMFormatLabelIndexFileFormat
http://www.loni.ucla.edu/twiki/bin/view/SHIVA/LabelIndexFileFormat?t=2006-07-06T23:19Z
Label Index File Format Label index files ( .lbl, .txt) are ascii files used by Duff and SHIVA. Each line contains information of the label id, color (optional), ... (last changed by HengYuan)2006-07-06T23:19Zheng1.1updatedmajorhttp://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/LabelIndexFileFormathttp://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/LabelIndexFileFormatWebPreferences
http://www.loni.ucla.edu/twiki/bin/view/SHIVA/WebPreferences?t=2006-06-21T06:43Z
SHIVA Web Preferences The following settings are web preferences of the SHIVA web. These preferences overwrite the site-level preferences in TWIKIWEB . WIKIPREFSTOPIC ... (last changed by HengYuan)2006-06-21T06:43Zheng1.22updatedmajorhttp://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/WebPreferenceshttp://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/WebPreferencesCIVMFormat
http://www.loni.ucla.edu/twiki/bin/view/SHIVA/CIVMFormat?t=2006-06-21T06:36Z
CIVM Format A CIVM image is consisted of a header file and bunch of files each representing a slice. AKAIK the header file resembles brucker image file format. Header ... (last changed by HengYuan)2006-06-21T06:36Zheng1.1updatedmajorhttp://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/CIVMFormathttp://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/CIVMFormatGUI_RC
http://www.loni.ucla.edu/twiki/bin/view/SHIVA/GUI_RC?t=2006-01-06T23:25Z
GUI RC is an XML file which describes what the SHIVA frame should look like. It is written in CookSwing. shiva.ShivaGUI class extends JFrame to have an setter for ... (last changed by HengYuan)2006-01-06T23:25Zheng1.1updatedmajorhttp://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/GUI_RChttp://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/GUI_RCSTART_RC
http://www.loni.ucla.edu/twiki/bin/view/SHIVA/START_RC?t=2006-01-06T23:24Z
STARTUP RC points to an XML list of plugins to be loaded. It should be noted that how SHIVA looks is mainly specified using plugins. It is written in CookXml. shiva ... (last changed by HengYuan)2006-01-06T23:24Zheng1.1updatedmajorhttp://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/START_RChttp://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/START_RCStartConfigure
http://www.loni.ucla.edu/twiki/bin/view/SHIVA/StartConfigure?t=2006-01-06T23:15Z
In shiva.Main class, there are two global class variables START RC and GUI RC which can be changed to point to different resource file locations before shiva.Main ... (last changed by HengYuan)2006-01-06T23:15Zheng1.1updatedmajorhttp://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/StartConfigurehttp://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/StartConfigureShivaConfiguration
http://www.loni.ucla.edu/twiki/bin/view/SHIVA/ShivaConfiguration?t=2006-01-06T23:05Z
SHIVA can be configured to have completely different look and feels. 1. Configure startup resource file location. 1. Configure ToggleComamnds 1. Configure menu 1. ... (last changed by HengYuan)2006-01-06T23:05Zheng1.1updatedmajorhttp://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/ShivaConfigurationhttp://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/ShivaConfigurationPlugin
http://www.loni.ucla.edu/twiki/bin/view/SHIVA/Plugin?t=2006-01-06T22:55Z
Steps to create a plugin 1. Implement shiva.interfaces.ShivaPlugin . 1. Have public final static String PLUGIN DESCRIPTION "Some Description"; in the class. 1. Define ... (last changed by HengYuan)2006-01-06T22:55Zheng1.3updatedmajorhttp://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/Pluginhttp://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/Plugin