META TOPICPARENT BrainCollectionData -- QuangHoang - 02 Jul 2007
Line: 78 to 78
	MRIs Inflate citation found   MRIs Smooth citation found   MRIs Sphere citation found
Changed:
< <	MRI CA Label citation found   MRI CA Normalize cit found but unsure   MRI CA Register cit found but unsure   MRI Convert cit found but unsure   MRI Edit WM w/Aseg cit found but unsure   MRI EM Register cit found but unsure   MRI Fill citation found   MRI Mask citation found   MRI Normalize citation found
> >	MRI CA Label citation found ST corrected MRI CA Normalize cit found but unsure ST corrected MRI CA Register cit found but unsure ST corrected MRI Convert cit found but unsure ST corrected MRI Edit WM w/Aseg cit found but unsure ST corrected MRI EM Register cit found but unsure ST corrected MRI Fill citation found ST corrected MRI Mask citation found ST corrected MRI Normalize citation found ST corrected
	MRI Remove Neck citation found   MRI Segment citation found   MRI SegStats? citation found

	META TOPICPARENT BrainCollectionData -- QuangHoang - 02 Jul 2007
Changed:
< <	Module Status Cleaner Cleanup AIR
> >	Module Status Cleaner Cleanup Icon AIR
	Affine to Rigid   AP corrected Align Linear   AP corrected Align Warp citation found AP corrected
Line: 30 to 30
	Reslice Warp citation found AP corrected Soft Mean citation found AP corrected cd warp   AP corrected
Changed:
< <	MNI
> >	MNI
	Analyze Image to Minc emailed - no reply yet   Mincblur emailed - no reply yet   MINC Mask emailed - no reply yet
Line: 44 to 44
	Raw to MINC emailed - no reply yet   XFM Concatenate emailed - no reply yet   XFM Invert emailed - no reply yet
Changed:
< <	FSL
> >	FSL
	AVW CC     AVW Change Filetype     AVW Complex
Line: 59 to 59
	Flirt citation found ST corrected MCFLIRT citation found QH corrected AVW CP Geom
Changed:
< <	BrainSuite
> >	BrainSuite
	Bias Field Corrector citation found   Brain Surface Extractor citation found   Cerebro shattuck: hold off on it
Line: 69 to 69
	Partial Volume Classifier citation found   Skullfinder citation found   topology correction algorithm citation found
Changed:
< <	ITK
> >	ITK
	3D Deformable Registration emailed - no reply yet   3D Deformable Model Segmentation emailed - no reply yet   3D Multi-modality B-spline Deformable Registration emailed - no reply yet
Changed:
< <	Freesurfer
> >	Freesurfer
	MRIs Fix Topology citation found   MRIs Inflate citation found   MRIs Smooth citation found
Line: 92 to 92
	MRI SegStats? citation found   MRI Tessellate citation found   MRI Watershed citation found
Changed:
< <	LONI
> >	LONI
	3D MI citation found   Analyze to Raw citation found   Assess Alignment   Alex Cunha

	META TOPICPARENT BrainCollectionData -- QuangHoang - 02 Jul 2007
Line: 45 to 45
	XFM Concatenate emailed - no reply yet   XFM Invert emailed - no reply yet   FSL
Added:
> >	AVW CC     AVW Change Filetype     AVW Complex     AVW Fill     AVW Interleave
	AVW Merge citation found
Added:
> >	AVW Region of Interest     AVW to ASCII
	BET citation found   BET All citation found   BET Func citation found   Flirt citation found ST corrected MCFLIRT citation found QH corrected
Added:
> >	AVW CP Geom
	BrainSuite Bias Field Corrector citation found   Brain Surface Extractor citation found

	META TOPICPARENT BrainCollectionData -- QuangHoang - 02 Jul 2007
Changed:
< <	Module Status Author Cleanup AIR Affine to Rigid   Roger Woods good Align Linear   Roger Woods good Align Warp citation found Roger Woods corrected Binarize   Roger Woods corrected? Binary Mask citation found Roger Woods good Binary Math   Roger Woods corrected Combine AIR   Roger Woods Combine Warp   Roger Woods Crop citation found Roger Woods Define Common AIR   Roger Woods Determinant Mask   Roger Woods Fix Header   Roger Woods Fuse   Roger Woods Gaussian smoothing citation found Roger Woods Identify   Roger Woods Invert AIR   Roger Woods Layout   Roger Woods Magnify   Roger Woods Make Header   Roger Woods Overlay Mask   Roger Woods Reorient citation found Roger Woods Resize citation found Roger Woods Reslice AIR citation found Roger Woods Reslice Warp citation found Roger Woods Soft Mean citation found Roger Woods cd warp   Roger Woods MNI Analyze Image to Minc emailed - no reply yet Mincblur emailed - no reply yet MINC Mask emailed - no reply yet Mincresample emailed - no reply yet Minc Math emailed - no reply yet Minc to Analyze Image emailed - no reply yet N3 correction citation found N3 estimate citation found N3 evaluate citation found Print All Labels emailed - no reply yet Raw to MINC emailed - no reply yet XFM Concatenate emailed - no reply yet XFM Invert emailed - no reply yet FSL AVW Merge citation found BET citation found BET All citation found BET Func citation found Flirt citation found MCFLIRT citation found BrainSuite Bias Field Corrector citation found Brain Surface Extractor citation found Cerebro shattuck: hold off on it cortex07 shattuck: hold off on it duff surface generator citation found p-harmonic maps citation found Partial Volume Classifier citation found Skullfinder citation found topology correction algorithm citation found ITK 3D Deformable Registration emailed - no reply yet 3D Deformable Model Segmentation emailed - no reply yet 3D Multi-modality B-spline Deformable Registration emailed - no reply yet Freesurfer MRIs Fix Topology citation found MRIs Inflate citation found MRIs Smooth citation found MRIs Sphere citation found MRI CA Label citation found MRI CA Normalize cit found but unsure MRI CA Register cit found but unsure MRI Convert cit found but unsure MRI Edit WM w/Aseg cit found but unsure MRI EM Register cit found but unsure MRI Fill citation found MRI Mask citation found MRI Normalize citation found MRI Remove Neck citation found MRI Segment citation found MRI SegStats? citation found MRI Tessellate citation found MRI Watershed citation found LONI 3D MI citation found Analyze to Raw citation found
> >	Module Status Cleaner Cleanup AIR Affine to Rigid   AP corrected Align Linear   AP corrected Align Warp citation found AP corrected Binarize   AP corrected Binary Mask citation found AP corrected Binary Math   AP corrected Combine AIR   AP corrected Combine Warp   AP corrected Crop citation found AP corrected Define Common AIR   AP corrected Determinant Mask   AP corrected Fix Header   AP corrected Fuse   AP corrected Gaussian smoothing citation found AP corrected Identify   AP corrected Invert AIR   AP corrected Layout   AP corrected Magnify   AP corrected Make Header   AP corrected Overlay Mask   AP corrected Reorient citation found AP corrected Resize citation found AP corrected Reslice AIR citation found AP corrected Reslice Warp citation found AP corrected Soft Mean citation found AP corrected cd warp   AP corrected MNI Analyze Image to Minc emailed - no reply yet   Mincblur emailed - no reply yet   MINC Mask emailed - no reply yet   Mincresample emailed - no reply yet   Minc Math emailed - no reply yet   Minc to Analyze Image emailed - no reply yet   N3 correction citation found   N3 estimate citation found   N3 evaluate citation found   Print All Labels emailed - no reply yet   Raw to MINC emailed - no reply yet   XFM Concatenate emailed - no reply yet   XFM Invert emailed - no reply yet   FSL AVW Merge citation found   BET citation found   BET All citation found   BET Func citation found   Flirt citation found ST corrected MCFLIRT citation found QH corrected BrainSuite Bias Field Corrector citation found   Brain Surface Extractor citation found   Cerebro shattuck: hold off on it   cortex07 shattuck: hold off on it   duff surface generator citation found   p-harmonic maps citation found   Partial Volume Classifier citation found   Skullfinder citation found   topology correction algorithm citation found   ITK 3D Deformable Registration emailed - no reply yet   3D Deformable Model Segmentation emailed - no reply yet   3D Multi-modality B-spline Deformable Registration emailed - no reply yet   Freesurfer MRIs Fix Topology citation found   MRIs Inflate citation found   MRIs Smooth citation found   MRIs Sphere citation found   MRI CA Label citation found   MRI CA Normalize cit found but unsure   MRI CA Register cit found but unsure   MRI Convert cit found but unsure   MRI Edit WM w/Aseg cit found but unsure   MRI EM Register cit found but unsure   MRI Fill citation found   MRI Mask citation found   MRI Normalize citation found   MRI Remove Neck citation found   MRI Segment citation found   MRI SegStats? citation found   MRI Tessellate citation found   MRI Watershed citation found   LONI 3D MI citation found   Analyze to Raw citation found
	Assess Alignment   Alex Cunha Brain Parser   No Author Filtermesh   Boris Gutman Format 4 Classification   Boris Gutman Format 4 training   Boris Gutman
Changed:
< <	Geodesic Distance citation found Geodesic Mapping citation found Geodesic sulcal depth citation found HP Harmonic Mapping citation found HP Init Mapping w/ Label citation found HP Landmark Curves citation found HP Region Label cit found but unsure
> >	Geodesic Distance citation found   Geodesic Mapping citation found   Geodesic sulcal depth citation found   HP Harmonic Mapping citation found   HP Init Mapping w/ Label citation found   HP Landmark Curves citation found   HP Region Label cit found but unsure
	IMG to 3DM   No Author IRMA Report   Alex Cunha Image Registration   Alex Cunha
Changed:
< <	Implicit Surface Representation citation found Linear Interpolation Map to Mesh citation found
> >	Implicit Surface Representation citation found   Linear Interpolation Map to Mesh citation found
	MakeMesh?   Boris Gutman
Changed:
< <	Mean Curvature Flow with Barrier Force cit found but unsure Mesh to DTGrid cit found but unsure
> >	Mean Curvature Flow with Barrier Force cit found but unsure   Mesh to DTGrid cit found but unsure
	MeshSimplify?   Boris Gutman Rank Results   Alex Gutman SPHARM cit found but unsure* SVM classify   Boris Gutman SVM train   Boris Gutman Sulcal Fundi Extraction   Duygu Tosun
Changed:
< <	Sulcal Segmentation citation found
> >	Sulcal Segmentation citation found
	Surface File Format Converter   Duygu Tosun
Changed:
< <	Surface Mapping citation found Surface curvature features citation found Volume to Surface Mapping citation found parameter citation found
> >	Surface Mapping citation found   Surface curvature features citation found   Volume to Surface Mapping citation found   parameter citation found

	META TOPICPARENT BrainCollectionData -- QuangHoang - 02 Jul 2007 Module Status Author Cleanup AIR
Changed:
< <	Affine to Rigid   Roger Woods Align Linear   Roger Woods Align Warp citation found Roger Woods Corrected Binarize   Roger Woods Binary Mask citation found Roger Woods Binary Math   Roger Woods
> >	Affine to Rigid   Roger Woods good Align Linear   Roger Woods good Align Warp citation found Roger Woods corrected Binarize   Roger Woods corrected? Binary Mask citation found Roger Woods good Binary Math   Roger Woods corrected
	Combine AIR   Roger Woods Combine Warp   Roger Woods Crop citation found Roger Woods

	META TOPICPARENT BrainCollectionData -- QuangHoang - 02 Jul 2007
Changed:
< <	Module Status Author
> >	Module Status Author Cleanup
	AIR
Changed:
< <	Align Warp citation found Binary Mask citation found Crop citation found Gaussian smoothing citation found Reorient citation found Resize citation found Reslice citation found Reslice Warp citation found Soft Mean citation found
> >	Affine to Rigid   Roger Woods Align Linear   Roger Woods Align Warp citation found Roger Woods Corrected Binarize   Roger Woods Binary Mask citation found Roger Woods Binary Math   Roger Woods Combine AIR   Roger Woods Combine Warp   Roger Woods Crop citation found Roger Woods Define Common AIR   Roger Woods Determinant Mask   Roger Woods Fix Header   Roger Woods Fuse   Roger Woods Gaussian smoothing citation found Roger Woods Identify   Roger Woods Invert AIR   Roger Woods Layout   Roger Woods Magnify   Roger Woods Make Header   Roger Woods Overlay Mask   Roger Woods Reorient citation found Roger Woods Resize citation found Roger Woods Reslice AIR citation found Roger Woods Reslice Warp citation found Roger Woods Soft Mean citation found Roger Woods cd warp   Roger Woods
	MNI Analyze Image to Minc emailed - no reply yet Mincblur emailed - no reply yet

	META TOPICPARENT BrainCollectionData -- QuangHoang - 02 Jul 2007
Changed:
< <	Module Status
> >	Module Status Author
	AIR Align Warp citation found Binary Mask citation found
Line: 70 to 70
	LONI 3D MI citation found Analyze to Raw citation found
Changed:
< <	Assess Alignment   Brain Parser   Filtermesh   Format 4 Classification   Format 4 training
> >	Assess Alignment   Alex Cunha Brain Parser   No Author Filtermesh   Boris Gutman Format 4 Classification   Boris Gutman Format 4 training   Boris Gutman
	Geodesic Distance citation found Geodesic Mapping citation found Geodesic sulcal depth citation found
Line: 82 to 82
	HP Init Mapping w/ Label citation found HP Landmark Curves citation found HP Region Label cit found but unsure
Changed:
< <	IMG to 3DM   IRMA Report   Image Registration
> >	IMG to 3DM   No Author IRMA Report   Alex Cunha Image Registration   Alex Cunha
	Implicit Surface Representation citation found Linear Interpolation Map to Mesh citation found
Changed:
< <	MakeMesh?
> >	MakeMesh?   Boris Gutman
	Mean Curvature Flow with Barrier Force cit found but unsure Mesh to DTGrid cit found but unsure
Changed:
< <	MeshSimplify?   Rank Results
> >	MeshSimplify?   Boris Gutman Rank Results   Alex Gutman
	SPHARM cit found but unsure*
Changed:
< <	SVM classify   SVM train   Sulcal Fundi Extraction
> >	SVM classify   Boris Gutman SVM train   Boris Gutman Sulcal Fundi Extraction   Duygu Tosun
	Sulcal Segmentation citation found
Changed:
< <	Surface File Format Converter
> >	Surface File Format Converter   Duygu Tosun
	Surface Mapping citation found Surface curvature features citation found Volume to Surface Mapping citation found

	META TOPICPARENT BrainCollectionData -- QuangHoang - 02 Jul 2007
Line: 76 to 76
	Format 4 Classification   Format 4 training   Geodesic Distance citation found
Changed:
< <	Geodesic Mapping
> >	Geodesic Mapping citation found
	Geodesic sulcal depth citation found HP Harmonic Mapping citation found HP Init Mapping w/ Label citation found
Line: 92 to 92
	Mesh to DTGrid cit found but unsure MeshSimplify?   Rank Results
Changed:
< <	SPHARM
> >	SPHARM cit found but unsure*
	SVM classify   SVM train   Sulcal Fundi Extraction
Changed:
< <	Sulcal Segmentation
> >	Sulcal Segmentation citation found
	Surface File Format Converter
Changed:
< <	Surface Mapping   Surface curvature features
> >	Surface Mapping citation found Surface curvature features citation found
	Volume to Surface Mapping citation found parameter citation found

	META TOPICPARENT BrainCollectionData -- QuangHoang - 02 Jul 2007
Line: 88 to 88
	Implicit Surface Representation citation found Linear Interpolation Map to Mesh citation found MakeMesh?
Changed:
< <	Mean Curvature Flow with Barrier   Mesh to DTGrid
> >	Mean Curvature Flow with Barrier Force cit found but unsure Mesh to DTGrid cit found but unsure
	MeshSimplify?   Rank Results   SPHARM

	META TOPICPARENT BrainCollectionData -- QuangHoang - 02 Jul 2007
Line: 75 to 75
	Filtermesh   Format 4 Classification   Format 4 training
Changed:
< <	Geodesic Distance
> >	Geodesic Distance citation found
	Geodesic Mapping
Changed:
< <	Geodesic sulcal depth   HP Harmonic Mapping   HP Init Mapping w/ Label HP Landmark Curves   HP Region Label
> >	Geodesic sulcal depth citation found HP Harmonic Mapping citation found HP Init Mapping w/ Label citation found HP Landmark Curves citation found HP Region Label cit found but unsure
	IMG to 3DM   IRMA Report   Image Registration   Implicit Surface Representation citation found
Changed:
< <	Linear Interpolation Map to Mesh
> >	Linear Interpolation Map to Mesh citation found
	MakeMesh?   Mean Curvature Flow with Barrier   Mesh to DTGrid

	META TOPICPARENT BrainCollectionData -- QuangHoang - 02 Jul 2007
Line: 68 to 68
	MRI Tessellate citation found MRI Watershed citation found LONI
Changed:
< <	3D MI   Analyze to Raw
> >	3D MI citation found Analyze to Raw citation found
	Assess Alignment   Brain Parser   Filtermesh
Line: 85 to 85
	IMG to 3DM   IRMA Report   Image Registration
Changed:
< <	Implicit Surface Representation
> >	Implicit Surface Representation citation found
	Linear Interpolation Map to Mesh   MakeMesh?   Mean Curvature Flow with Barrier
Line: 100 to 100
	Surface File Format Converter   Surface Mapping   Surface curvature features
Changed:
< <	Volume to Surface Mapping   parameter
> >	Volume to Surface Mapping citation found parameter citation found

Line: 1 to 1
Added:
> >	META TOPICPARENT BrainCollectionData -- QuangHoang - 02 Jul 2007 < Module Status AIR Align Warp citation found Binary Mask citation found Crop citation found Gaussian smoothing citation found Reorient citation found Resize citation found Reslice citation found Reslice Warp citation found Soft Mean citation found MNI Analyze Image to Minc emailed - no reply yet Mincblur emailed - no reply yet MINC Mask emailed - no reply yet Mincresample emailed - no reply yet Minc Math emailed - no reply yet Minc to Analyze Image emailed - no reply yet N3 correction citation found N3 estimate citation found N3 evaluate citation found Print All Labels emailed - no reply yet Raw to MINC emailed - no reply yet XFM Concatenate emailed - no reply yet XFM Invert emailed - no reply yet FSL AVW Merge citation found BET citation found BET All citation found BET Func citation found Flirt citation found MCFLIRT citation found BrainSuite Bias Field Corrector citation found Brain Surface Extractor citation found Cerebro shattuck: hold off on it