JenniferTom 23 Mar 2006 Diffusion MRI uses diffusion gradients applied in different directions and strengths to tissue. The resulting signal will depend on local ...

CCB !DXJava library !OpenDX is a commonly used, public domain, visualization tool whose data model is able to represent a wide variety of data sets. It is difficult ...

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DXJava library usage examples Shows how to read an !OpenDX file and print it's positions. #ExampleOneAnchor Read a DX file and print it's "Positions" An example of ...

DX Java Library Change Log V 1.0.1 added ability to write int, double and float vectors (arrays where rank 1 and shape 1). V 1.0.3 Added support for reading !DataInputStreams ...

DX Java Library Feature Wish List Feature Wish List for CCB !DXJava Library $ Feature: A short (1 or 2 words) name for the feature. $ Description: A longer description ...

!DXJava version 1.1 Project Management TOC{depth "2"} Stakeholders TABLE{ sort "on" tableborder "1" cellpadding "1" cellspacing "2" headerbg "#DFE5E9" headercolor ...

CCB DXJava library Programmer's Guide The purpose of the !DXJava library. A short description of the !OpenDX Data Model An Overview of !DXJava library classes. Examples ...

CCB Special Interest Group on Data Management (SIG-DATA) SIG Home SIG Meeting Schedule: Winter'06 CCB SIG Meeting Calendar CCB SIG-DATA is a special interest group ...

JenniferTom 22 Mar 2006 Warping Morphometry Links to some useful Software: Reslicing SVPA (Sub-Volume-Probabilistic Atlas) BET (Brain Surface Extractor) BSE (Brain ...

Orientation Space Modeling/Analysis Terms Terms

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ShapeTools !DataReaderWriter Library Change Log 26 June 2007 Moved classes from !ShapeTools library. 27 June 2007 Added About class, set version to 1.0.0 6 July ...

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revsion 7 December 2005 Dec 7,8 , 2005- Shape Tools Presentations Pupose: Announce tools, demonstrate use, introduce library Desired Results: LONI staff uses tools ...

Two Demonstrations of New Software Tools CCB / Shape Tools presents: Shape Tools applications What : A presentation of new software: a 3d viewer and two Ucf analysis ...

DecodeShape Summary Constructs a 3d shape surface from coordinates encocded as a pair of color image files. Each pixel in a color image file corrosponds to a vertex ...

!DecodeShape Project Definition TOC{depth "2"} Overview Constructs a 3d shape surface from coordinates encocded as a pair of color image files. Each pixel in a color ...

JenniferTom 24 Mar 2006 Dementia is a describes a decline in mental capabilities. There are many different types of dementia including: Disease (AD), with Lewy Bodies ...

JenniferTom 24 Mar 2006 Dementia with Lewy bodies is the second leading cause of degenerative dementia . Since Lewy bodies are found in Parkinson’s and Alzheimer ...

An adaptive approach based on the Particle Method to extract the outer cortical surfaces of the brain from skull-removed 3D Magnetic Resonance Images (MRI). To formulate ...

Back Online CCB Calendar CCB Meetings CCB AHM Direct Cortical Mapping Yonggang Shi Yonggang Shi, Paul Thompson, Zhuowen Tu, Ivo Dinov, Stanley Osher, Arthur Toga Laboratory ...

DirectoryTool TOC{depth "2"} Overview DirectoryTool Provides cross platform directory utilities useful in creating application protocols. Usage Summary Argument Type ...

DiscreteDataReporter User Guide Overview This application prints a description of the regular discrete data object passed as an argument. The output includes the ...

The study of neurodegenerative diseases has been aided by new imaging technologies. Due to imaging, there is a greater ability to distinguish between different types ...

Back Online CCB Calendar CCB Meetings CCB AHM Driving Biological Project: Mapping Brain Development Longitudinally Lisa H. Lu Lisa H. Lu, Elizabeth R. Sowell and Mirella ...

A summary of the applications used to implement the elastic warp protocol Essential Steps EDITTABLE{ } TABLE{ sort "on" tableborder "1" cellpadding "1" cellspacing ...

Dual Surface Warp Protocol Project Definition ( v1x01 ) Public Project Description TOC{depth "3"} Overview This project will provide portable software tools that ...

Dual Surface Warp Protocol Comparison Although the warping procedure described herein is similar to the method designed and programmed by Dr. Paul Thompson, they ...

Dual Surface Warp Diagram The following diagram illustrates the sequence of the operations performed by the Dual Surface Warp protocol. StepProcessCortical SurfaceContourNotes ...

Dual Surface Warp Protocol Pipeline Use TOC{depth "3"} Overview The protocol may be run using the LONI Pipeline environment. Here are the general steps to run the ...

CCB Duff/Off Translator This is a program that can convert a duff file to an off file and vice-versa. Both formats share a triangular face structure; furthermore ...

Duff/Off Translator Bugs

Duff/Off Translator Change Log

Duff/Off Translator Example Usage This is a set of examples which will demonstrate the usage of the Duff/Off translator. The usage page of the program will be shown ...

Duff/Off Translator Feature Wishlist

Duff/Off Translator Project Definition ( v1x0 ) (draft, 18 December) TOC{depth "2"} Overview This is a project that will allow a simple conversion between the Duff ...

Duff/Off Translator User's Guide This is a program that translates between Duff and Off, retaining metadata that is equivalent between formats. Both formats encode ...

Duff/Off Translator Downloads

Duff Programming Notes draft 9-14-06 This TWiki topic provides notes on use of !Duff files (dfs). Overview The Duff format uses binary data to represent a three-dimensional ...

ROI-based Bending Energy Classification: Shape analysis and mapping. Description: Compute a ROI-based shape measure on regions labeled on the triangle mesh representation ...

Cortical Gray Matter Tissue Thickness Classification: Cortical shape analysis and mapping, measuring cerebral atrophy. Description: Compute the cortical gray matter ...

Geodesic Correspondence Classification: Shape mapping Description: Estimate geodesic correspondence between two concentric 3-D objects. Geodesic correspondence is ...

Local Gyrification Index Classification: Cortical shape analysis and mapping, measuring cerebral atrophy. Description: Compute dense estimates of gyrification index ...

Mean Curvature Flow with a Barrier Force Classification: Shape mapping Description: A level-set implementation of mean curvature flow with a barrier force to estimate ...

Measures of Cortical Complexity Classification: Cortical shape analysis and mapping, measuring cerebral atrophy. Description: Compute dense estimates of cortical ...

CCB Spatial Normalization of Cortical Surfaces Duygu Tosun Online CCB Calendar CCB Meetings Multi-scale optical flow warping Topic permissions Set ALLOWTOPICCHANGE ...

Geodesic Sulcal Depth Classification: Cortical shape analysis and mapping, measuring cerebral atrophy. Description: Compute the cortical depth from the outer (artificial ...

Curves of Sulcal Fundi and Gyral Crown Classification: Shape analysis and mapping Description: Given the sulcal segmentation results, paths through the sulcal fundus ...

Cortical Sulcal/Gyral Segmentation Classification: Shape analysis and mapping Description: Based on the geodesic depth from the outer cortex (i.e., shrink-warp or ...

DX Java Library Frequently Asked Questions (none yet asked)