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NCBC iTools Database Configuration Back to iTools Summary iTools uses Hibernate to connect and interface with its database. Hibernate is an Industry-standard ORM ...

NCBC iTools Release Notes (2009+) TOC Background (2005-2008) Jan2009 Instructions on iTools rebuilding, redeployment and Revisions of January 2009: iTools Source ...

NCBC iTools WSDL Interface Description Back to iTools Wiki Page iTools Web-services Data language (WSDL) Interface Description To utilize the iTools WSDL interface ...

Modalities Scanners/Equipment/Imaging/Physics Voxels

Image Coordinate Tools Library Version 1.0.0 This library provides methods that describes 3D image (volume) orientation and location in space. The library stores ...

Image Coordinate Tools Library Examples Image Coordinate Tools version 1.0 #TableOfContentsAnchor TOC{depth "2"} Construct two dimensional array of double which is ...

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ImageCoordinateTools Glossary $ !Size : Number of voxels along axis. $ !Step : The distance between center of adjacent voxels. $ !Start : Position of origin of the ...

!ImageCoordinate Project Definition This library provides methods that describes 3D image (volume) orientation and location in space. The library stores data representation ...

(None thus far) Revised: 22 Nov 2006

(None thus far) Revised: 22 Nov 2006

!Shape Tools Library !ImageJ Plugin Reader Definition ( v1x0 ) TOC{depth "2"} Overview This project will enable the !ShapeTools library to create a shape that represents ...

A case that use image files which are supported by !ImageJ library. Following application converts the image file to a shape and display the result in !ShapeViewer ...

Frequently Asked Questions #TableOfContentsAnchor TOC{depth "2"} Is there any guide line to follow when I write plugin to use !ImageJPluginReader? As loong as your ...

(None thus far) Revised: 22 Nov 2006

Ovreview This programming guide shows how to write Java classes that uses !ShapeTools library to create a shape that represents a 2d section of an image, using an ...

Overview This project will enable the !ShapeTools library to create a shape that represents a 2d section of an image, using an ImageJ plugin to read the image. General ...

!ImageJ Plugins TOC{depth "2"} The LONI Reader jar file contains these !ImageJ plugins: UIF reader UCF reader OBJ reader (contour obj, only) UVL reader About the ...

JenniferTom 22 Mar 2006 There are a wide variety of neuroimaging modalities which can be used by themselves or as complements to one another. Nuclear Magnetic Spectroscopy ...

JenniferTom 23 Mar 2006 Orientation Orientation Axial Sagittal Coronal AC-PC For more information and images visit: Orientation and Voxel Order Terminology Sagittal ...

Back Online CCB Calendar CCB Meetings CCB AHM Image Registration Meta-Algorithms Alexandre Cunha and Dr. Arthur Toga UCLA Department of NeurologyNeuroscience Research ...

JenniferTom 22 Mar 2006 Y or Z-step-size Anisotropic Isotropic Coordinates versus Voxel Space Coordinates

CCB !ImageToShape Shape representation of image files are needed in order to display image and its multi tracer contour in the !ShapeViewer. The !ImageToShape application ...

CCB !ImageToShapeAttribute Project Components Documentation ImageToShapeAttribute User's Guide v 1.0 Examples using project version 1.0 A Glossary of terms version ...

None !BaecheolShin 29 Apr 2009

Shin, Bae Cheol Version 1.0.1 March 25, 2009 Shin, Bae Cheol Version 1.0.1 May 13, 2009 Supporting analyze image type: DT UNKNOWN. Shin, Bae Cheol Version 1 ...

TOC{depth "2"} Examples of using ImageToShapeAttribute application. General Usage Example 1. Use a template and modify some of data fields by values given by command ...

Questions and Answers TOC{depth "3"} I'm trying to use ImageToShapeAttribute and I get this error: Data type 0 is not supported. Data type 0 represents unknown data ...

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ImageToShapeAttribute Glossary The nearest neighbor algorithm: This is way to obtain voxel data for the pivot vertex. Previously voxel index (pivot voxel) corresponding ...

TOC{depth "2"} Overview Maps image volume voxel values onto the vertices of a surface mesh. Assumptions Images and Surfaces must be in the same coordinate system ...

BaecheolShin^? 13 Apr 2009

Examples of common usage In these examples we assume that the !ImageToShapeAttribute application is saved in a file named !ImageToShapeAttribute.jar. Ex 1) Print ...

!ExtractContour FAQ TOC{depth "3"} What would be output file type if I don't specify output file type? The output type will be Open DX file type. What other output ...

(None thus far) Revised: 30 Nov 2006

(None thus far) Revised: 30 Nov 2006

Examples of common usage In these examples we assume that the !ImageToShape application is saved in a file named !ImageToShape.jar. Ex 1) Print a usage summary to ...

(None thus far) Revised: 30 Nov 2006

(None thus far) Revised: 30 Nov 2006

!ImageToShape Project Definition TOC{depth "2"} Restrictions, Exclusions, Limitations Initially Analyze image will be only input file format allowed. People Affected ...

!ImageToShape Project Definition TOC{depth "2"} See: ImageToShapeProjectDefinitionV1x1 Restrictions, Exclusions, Limitations Initially Analyze image will be only ...

Overview The application creates a shape that represent 2D section of an image. This application will enable the !ShapeTools library to create a shape that represents ...

ImageVoxelMap Overview: ImageVoxelMap is a !ShapeTools application program that will copy an image volume data file, applying a user specified mapping to the data ...

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Version 1.0.0 !BaecheolShin 04 May 2009 Version 1.0.0 !BaecheolShin 05 May 2009 Examples on error messages, "before and after images", and example of show command ...

Error Handling in the !ImageVoxelMap application. TOC{depth "3"} 1. Conflict Map Following is an example map file that contains conflict maps # Test map conflict ...

Examples of using the !ImageVoxelMap application. TOC{depth "3"} General Usage help command: Print general usage of this applicaiton. examples command: Print simple ...

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Creating Map File TOC{depth "2"} Map File Format Map files are ASCII text containg zero or more of the following mapping clauses All lines in the map file may begin ...

Image Voxel Map Project Definition TOC{depth "2"} Project: Image Voxel Map Revision: 13 April 2009 Overview: !ImageVoxelMap is a !ShapeTools application program that ...

TOC{depth "2"} Overview ImageVoxelMap is a !ShapeTools application program that will copy an image volume data file, applying a user specified mapping to the data ...

!ShapeTTest Project Definition TOC{depth "2"} Overview This application will calculate the value of an Independent T-Test for each row of two tables of values. Arguments ...

CCB Individual Researcher's Project Pages Main.BinDong Non-Local Mean Shape Smoothing Online CCB Calendar Back to the Research Project Pages Reference: ftp://ftp ...

CCB Pipeline DAta Modules/Nodes Online CCB Calendar Back to the Research Project Pages Pipeline Data Modules/Nodes Left Putamen Pipeline Node Right Putamen Pipeline ...

Feature Requests for LONI Pipeline TOC{depth "2"} Priority 4.1.1 client library to synch with server library 4.1.1 update server library w/o server restart 4.1.1 ...

CCB: Chelsea Golub's Alzheimer's Disease Project Page Online CCB Calendar Back to the Research Project Pages Pipeline Data Nodes Page Back to Visitor/Project Pages ...

CCB: Individual Researcher's Project Pages Georges Salamon DTI and MRI Atlas Delineation Project Online CCB Calendar CCB Meetings Individual Researcher's Projects ...

CCB Individual Researcher's and Postdoc's Project Pages Fotios Konstantinidis Intelligent Pipeline Interface Online CCB Calendar CCB Meetings Back to the Project ...

CCB: Individual Researcher's and Postdoc's Project Pages Main.ShantanuJoshi Online CCB Calendar CCB Meetings Other research Projects TOC Super-resolution The following ...

CCB: Individual Researcher's Project Pages Main.ShruthiChakrapani Pipeline Resources Online CCB Calendar CCB Meetings Individual Researcher's Projects TOC Pipeline ...

CCB: Individual Researcher's Project Pages Main.SmritiRaghunathan Automated Volume Information (AVI) Online CCB Calendar CCB Meetings Individual Researcher's Projects ...

CCB: Individual Researcher's Project Pages Main.SmritiRaghunathan Automated Volume Information (AVI) User-Guide Online CCB Calendar CCB Meetings Individual Researcher ...

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CCB Individual Researcher's Project Pages Main.YuanXu Hippocampal Shape Analysis Online CCB Calendar Back to the Research Project Pages TOC INTRODUCTION LICENSE ...

JenniferTom 22 Mar 2006 Toward the underside of the brain or head. Same as ventral (which means towards the stomach as opposed to the back).

JenniferTom 24 Mar 2006 The inferior frontal gyrus is located in the cortex of the brain and contains Brocas area. Location of Inferior Frontal Gyrus: Image was released ...

JenniferTom 24 Mar 2006 The inferior temporal gyrus is located in the lobe beneath the middle temporal gyrus.

!InflateContour Maps a contour according to a transform defined by the corrospondences of the faces of two homologous shapes. TOC{depth "2"} Description The InflateContour ...

Examples of common usage In these examples we assume that the !InflateContour application is saved in a file named !InflateContour.jar. java jar !InflateContour.jar ...

!InflateContour Project Definition TOC{depth "2"} Overview The InflateContour program is inverse of the application MapContour. Given a contour, presumed to be flattened ...

Overview The !InflateContour prgram is inverse of the application MapContour. Given a contour, presumed to be flattened by MapContour , and the original 3d surface ...

Inflate Flatmap Table of Contents TOC{depth "2"}

Public web page of InflateFlatmap !InflateFlatmap Project Definition ( v1x00) TOC{depth "2"} Overview Warped, flattened surfaces are difficult to compare, and otherwise ...

InflateSurface TOC{depth "2"} Description This application will generate a shape whose coordinates and colors are specified by data defined on a regular grid. In ...

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Inflate Surface User's guide goes here Examples of RDD map , inflated to surface

Notes on installing a Java3d !.5 version , using JOGL bindings, onto Mac OS X (from http://www.nofluffjuststuff.com/blog detail.jsp?rssItemId 97558) the waiting game ...

!InterpolateContour TOC{depth "2"} Overview InterpolateContour uses spline interpolation to smoothly interpolate shape files containing contours. The number of interpolated ...

InterpolateContour Frequently Asked Questions TOC{depth "2"} What does Error: Contours cannot be interpolated." Mean ? The full text of a commonly seen error message ...

!InterpolateContour Project Definition TOC{depth "2"} Overview Write an application that interpolates contours. Restrictions, Exclusions, Limitations Only works on ...

Change requests for InterpolateContour add capability to interpolate multiple contours in one program invocation ( 7/19/08 ).

Now available from the Loni Software Download web site. A program to interpolate contour vertices and data attributes in a Ucf file. This program interpolates the ...

JenniferTom 22 Mar 2006 On the same side.

JenniferTom 22 Mar 2006 Exhibiting equal physical properties or actions (OED) – x, y and z step-sizes are identical.

NCBC XMLtology for Tool Integration iTools TOC Summary iTools is an infrastructure for managing (databasing, traversal and comparison) of diverse computational biology ...