JenniferTom 24 Mar 2006 The primary motor cortex is located in the frontal lobe and mediates movement by controlling muscles.

JenniferTom 23 Mar 2006 MEG measures the magnetic fields produced by electrical activity in the brain. One such device that can make measurements of these extremely ...

JenniferTom 23 Mar 2006 MRA images blood vessels using MRI . It is used clinically to diagnose heart disorders, stroke and blood vessel diseases.

JenniferTom 23 Mar 2006 In MRI all of the atomic nuclei are lined up parallel or anti-parallel to a strong magnetic field. A 180 degree RF pulse or inversion pulse ...

This input raw data is a skull-removed MRI volume. It is a binary file. The head of the file is the control information of the input MRI data, which stores volume ...

JenniferTom 23 Mar 2006 NMR studies the magnetic properties of naturally occurring nuclei in the body by aligning them with an external magnetic field. It is used ...

mShape An interface to !ShapeTools from within Matlab TOC{depth "2"} Using !ShapeTools with Matlab Requirements Matlab 6, or greater (must support Java). Frequently ...

Using !ShapeTools from Matlab Frequently Asked Questions TOC{depth "2"} How do I install the !ShapeTools library so that Matlab can see it ? Tell your current matlab ...

Examples of using !ShapeTools from in Matlab scripts TOC{depth "2"} Create a Shape from a set of triangulated faces Create a shape, in Matlab, from a set of triangulated ...

MakeSceneFile Overview: This program allows creation of a ShapeViewer compatible scene file without having to start the ShapeViewer. Project Components Documentation ...

NA

Created by !BaecheolShin 17 July 2009

NA

Examples of using the !MakeSceneFile application. TOC{depth "3"} General Usage help command: Print general usage of this applicaiton. examples command: Print simple ...

NA

NA

Example of a text file containing a list of colors. One can provide a file containing following content for five shapes. RGB intensity value must be separated by ...

Example of a text file containing a list of shape. A text file that containing a list of shapes will store a shape file path per line. Empty line is ignored and the ...

MAST.MakeSceneFile project definition Version: 1.0.0 User Guide Page: MAST.MakeSceneFile TOC{depth "2"} Restrictions, Exclusions, Limitations The output scene file ...

TOC{depth "2"} Overview This program allows creation of a ShapeViewer compatible scene file without having to start the ShapeViewer. Command Line Usage The command ...

!MapContour Maps a contour according to a transform defined by the corrospondences of the faces of two homologous shapes. TOC{depth "2"} Description One approach ...

none thus far

none thus far

!MapContour Project Definition TOC{depth "2"} Restrictions, Exclusions, Limitations This application assumes the most of points on the contour will lie on the original ...

Examples of common usage In these examples we assume that the !MapContour application is saved in a file named !MapContour.jar. java jar !MapContour.jar shape data ...

none thus far

none thus far

Map Contour User Guide Table of Contents TOC{depth "2"} Overview Three dimensional surface warping often uses sets of homologous fiducial points to define corresponding ...

Back Online CCB Calendar CCB Meetings CCB AHM Mapping Brain Changes in HIV/AIDS and Dementia Paul Thompson Paul Thompson, Associate Professor of Neurology, LONI Phone ...

Medial Distance Calculator Various data analysis protocols use nonportable software to accomplish the computation described below. The details of this computation ...

Medial Distance Bugs List

Medial Distance Change Log 7/11/07 improved support for LONI Pipeline. Added pipelineJar, pipelineJVM, pipelineJVMOptions arguments. 7/12/07 Always reads Ucf as ...

Medial Distance Glossary of Terms

Medial Distance Calc Project Definition ( v1x01 ) Public Project Description TOC{depth "2"} Overview This project will create a Java application that computes and ...

Medial Distance Feature Wish List

Medial Distance Frequently Asked Questions TOC{depth "3"} Why does your medial distance differ from that calculated by Dr. Thompson's tools ? These differences arise ...

Medial Distance Users's Guide TOC{depth "3"} Overview This application computes and stores the distance between the vertices of a shape, defined as a group of contours ...

CCB Shape Tools Meeting 04 May 2005 Agenda Review current status (10 min) Craig Shape Tools Jeff Shape Viewer Discuss Issues (15 min) Determine needed documentation ...

06 April 2005 Agenda Review last weeks items issues Viewer Shape Library Review Topology implementations Review Viewer Define project products and completion target ...

Meeting Agenda 8 June 2005 CCB Presentation report (5 min) Other Items (5 min) Project Review (20 min) Lessons Learned (10 min) What's next for Revision 2.0 ...

CCB Surface / Contour tools meeting 9 March 2005, 11 AM, Roger's office Attending Ivo, Roger, Keija, Craig, Jeff Purpose: Replace all existing UCF code with new, ...

CCB Shape Tools Meeting 11 May 2005 Agenda Review current status (10 min) Craig Shape Tools Multigrid 255x256, 150x100 only Craig Documentation Jeff Shape Viewer ...

13 Apr 2005 Agenda Review last week work Identify test users Plan next week work To Do for Next Meeting To Do from last Meeting Craig Modify edges in current shape ...

CCB Shape Tools Meeting 18 May 2005 Agenda Review current status (10 min) Craig documentation Glossary 10 Viewer User Manual 5 Sample Applet html for web page designers ...

20 April 2005 Agenda Item : Allotted Minutes Status Review: 10 Craig Library, Project Schedule Jeff Viewer Ivo Roger Library Review 10: Ucf access methods: 5 ...

Meeting Notes 20 May 2005 Discussed !ShapeTools library does not read Pauls' "diamond" format contours problem is likely to be that contours with 1 vertex were ...

CCB / Shape Meeting Notes 23 March 2005 Discussed Shall data fields be stored as part of a Shape or outside of it ? Use topological primitives to (Cell, or N-form ...

Meeting Notes 24 May 2005 Discussed X Craig fix bugs reading "diamond" ucf Craig find, from linda, loni web site location for demo applet. X Craig modify User ...

CCB Shape Tools Meeting 27 April 2005 Agenda Review current status Decide final feature set for May 1 release. Determine needed documentation Craig Shape Tools get ...

Agenda 30 Mar 2005 Viewer evalution comments Tools version 29 March 2005 Existing library reviews VisAD Vtk JTS Viewer Features Data assocation in Shape or outside ...

Shape Conversion Meeting Notes October 7, 2005

Previous week TOC Meeting Purpose: Decide work to be done in next 3 months. Agenda for 01 February 2006 Shape Tools meeting Review prior weeks to do items "+" means ...

Previous week Agenda and Notes for 01 July 2008 Shape Tools meeting CS Review ColorSurface tool code, modify , with BC, to handle scalar valued images. CS review ...

Previous week Meeting Purpose: Agenda for 01 March 2006 Shape Tools meeting Review prior weeks to do items "+" means "done", "-" means "in progress" Craig complete ...

Previous week Agenda for 01 May 2007 Shape Tools meeting Review prior weeks to do items Discussed fly wing application Interpolation need TIff support in Fly Wing ...

Previous week Meeting Purpose: Status review of week 30-31, plans for Week 31-32 Agenda for 2 Aug 2006 Shape Tools meeting (Week 31-32) Review prior weeks to do items ...

Shape Tools meeting / 2 Nov. 2005 Agenda Report on prior week's to do list activities: X Craig ask whether we can use production server certificates to sign applets ...

Previous week Agenda for 02 October 07 Shape Tools meeting Review prior weeks to do items !BaeCheol Modify Djiksta minimum distance finder class to define distance ...

Previous week Agenda for 3 April 2007 Shape Tools meeting (Week 12) Review prior weeks to do items Ryan Document multigrid solver on TWiki Ryan test multigrid on ...

Agenda 03 August 2005 Prior To-Do List Craig Complete first version of a generic read() method that determines how to read a file. Craig Minc binary Obj reader ...

Previous week Meeting Purpose: Status review of last week, plans for next week Agenda for 03 Jan 2007 Shape Tools meeting (Week 1) Review prior weeks to do items X ...

Previous week Agenda for 03 July 2007 Shape Tools meeting Review prior weeks to do items !BaeCheol first revision of !MapContour !BaeCheol improvements to !ShapeToImage ...

Previous week Agenda and Notes for 03 June 2008 Shape Tools meeting prior meetings to do list Discussed selection of surface extraction tasks: implement ASP or CLASP ...

Previous week Agenda and Notes for 3 March 2008 Shape Tools meeting Review prior weeks to do items Craig define surface curvature and intersection tool project Craig ...

Previous week Meeting Purpose: Update status and plan the next week's work on the various CCB Shape Tools projects. Agenda for 03 May 2006 Shape Tools meeting Review ...

Previous week Agenda and Notes for 3 Sep. 2008 Shape Tools meeting prev. weeks to do CS voxel / vertex translation tools code review. CS plugin development CS private ...

Previous week Agenda for 4 December 07 Shape Tools meeting Review prior weeks to do items !BaeCheol work on application to blend 2 257x257 uif files Craig All Hands ...

Previous week Agenda for 04 January 2006 Shape Tools meeting Review prior weeks to do items "+" means "done", "-" means "in progress" X Craig Test !CGAL data structure ...

Previous week Agenda and Notes for 4 Nov 2008 Shape Tools meeting prev. weeks to do Fly Wing modifications to use warp tools JNI bridge to shape tools Shape Density ...

Previous week Meeting Purpose: Status review of last week, plans for next week Agenda for 04 October 2006 Shape Tools meeting (Week 40-41) Review prior weeks to do ...

Previous week Agenda for 04 September 07 Shape Tools meeting Review prior weeks to do items All decide how to manage multiple libraries All decide on standard ant ...

Previous week Meeting Purpose: Agenda for 05 April 2006 Shape Tools meeting Review prior weeks to do items X Craig impove speed of shape reader's. target 200 of equiv ...

Previous week Agenda and Notes for 05 Aug 2008 Shape Tools meeting prev. weeks to do CS Surf Stat modifications CS review Voxel/World mapping interface CS computer ...

Previous week no meeting 29 May 2007 Agenda for 5 June 2007 Shape Tools meeting Review prior weeks to do items X Craig vacation !BaeCheol ShapeToImage X !BaeCheol ...

CCB !ShapeTools Attending Craig, Yonggang, Jeff, Duygu Agenda Status of work in progress Brief look at SimpleShapeViewer requirements Review Remove File System browser ...

Previous week Meeting Purpose: Status review of last week, plans for next week Agenda for 06 November 2006 Shape Tools meeting (Week 49-50) Review prior weeks to do ...

Previous week Agenda and Notes for 06 January 2009 Shape Tools meeting Issues, status polymender port in progress, needs debugging principal axis alignemnt tool may ...

Shape Tools Meeting 6 July 2005 Agenda Status Craig has added classes to support Minc Obj. Craig is working on getting Java3d to display the minc geometry. Roger ...

Previous week Meeting Purpose: Status review and assignment of work for next meeting, sometime in Week 28 Agenda for 6 July 2006 Shape Tools meeting (Week 27) Review ...

Previous week Meeting Purpose: Status review of last week, plans for next week Agenda for 06 March 2007 Shape Tools meeting (Week 9) Review prior weeks to do items ...

Previous week Agenda and Notes for 06 May 2008 Shape Tools meeting prior meetings to do list CS find out how to set up software downloads. CS find source of surface ...

Previous week Agenda for 06 November 07 Shape Tools meeting Review prior weeks to do items !BaeCheol research alternative methods to solve PDE's on a triangular mesh ...

Previous week Agenda and Notes for 6 Oct 2008 Shape Tools meeting prev. weeks to do CS ensure R uses current !ShapeTools library. CS JNI interface for !ShapeToolsIO ...

Previous week Meeting Purpose: Status review of last week, plans for next week Agenda for 06 September 2006 Shape Tools meeting (Week 36-37) Review prior weeks to ...

CraigSchwartz^? 07 Aug 2007

Last Meeting Agenda 07 Dec 2005 Review this week's To Do items: X Craig Write Dec presentation outline X Craig fix !ShapeViewer binary obj problems Craig Off, Ucf ...

Previous week Meeting Purpose: Status review of last week, plans for next week Agenda for 7 February 2007 Shape Tools meeting (Week 6) Review prior weeks to do items ...

Previous week Meeting Purpose: Review Prior Development Cycle and assign general priorities for the next cycle Agenda for 07 June 2006 Shape Tools meeting discuss ...

CCB Shape Tools Meeting 7 September 2005 Agenda Review To Do from Last Meeting X Craig investigate spline interpolation why doesn't order 1 mimic Paul's method ...

Previous week Agenda and Notes for 8 April 2008 Shape Tools meeting Discussed beta pipeline can be ready by next meeting (tuesday) Issues pipeline file copy operations ...

Previous week Meeting Purpose: Agenda for 08 February 2006 Shape Tools meeting Review prior weeks to do items "+" means "done", "-" means "in progress" Craig JNI ...

Previous week Agenda for 08 January 08 Shape Tools meeting Review prior weeks to do items !BaeCheol modify BlendFlatmap to support UIF files. !BaeCheol Documentation ...

Previous week Agenda and Notes for 08 July 2008 Shape Tools meeting CS Review ColorSurface tool code, modify , with BC, to handle scalar valued images. CS organize ...

Previous week Meeting Purpose: Agenda for 08 March 2006 Shape Tools meeting Review prior weeks to do items X Craig Complete !OpenDX read/write (positions+connections ...

Previous week Agenda for 08 May 2007 Shape Tools meeting Review prior weeks to do items X !BaeCheol complete additional programs (ShapeAverage and ShapeStatistics ...

Previous week Meeting Purpose: Status review of last week, plans for next week Agenda for 08 November 2006 Shape Tools meeting (Week 45-46) Review prior weeks to do ...

Previous week Meeting Purpose: Status review of week 31-32, plans for Week 32-33 Agenda for 9 Aug 2006 Shape Tools meeting (Week 32-33) Review prior weeks to do items ...

Agenda Meeting Presentation Report Status of prior week's items Craig Off writer Craig Applet shape viewer software download distribution X Craig final touch ...

Previous week Agenda for 09 October 07 Shape Tools meeting Review prior weeks to do items Craig create pipeline and needed tools to use !RigidQuaternionWarp to create ...

Previous week Agenda and Notes for 09 Sep. 2008 Shape Tools meeting prev. weeks to do CS ImageCoordinateTools tools code review. CS !ContourMatching code review ...

Previous week Agenda for 10 April 2007 Shape Tools meeting Review prior weeks to do items Ryan Document multigrid solver on the Elastic Warp Twiki pages X Ryan write ...

CCB Shape Tools Program 10 August 2005 Agenda Status !ShapeTools Library !ShapeViewer R Tools Reviews of java 3d book and geometry library http://java.sun.com/products ...

Previous week Meeting Purpose: Status review of last week, plans for next week Agenda for 10 Jan 2007 Shape Tools meeting (Week 2) Review prior weeks to do items X ...

Previous week Agenda for 10 July 2007 Shape Tools meeting Review prior weeks to do items !BaeCheol !ContourMap !BaeCheol, Craig, Ryan Define MapContour !BaeCheol ...

Previous week Agenda and Notes for 10 June 2008 Shape Tools meeting prior meetings to do list CS,RC, BC surf. extraction functionality enumeration. CS,RC,BC define ...

Previous week Agenda and Notes for 10 March 2008 Shape Tools meeting Review prior weeks to do items All specify what the shape reporting tool will do. Ryan Complete ...

Previous week Meeting Purpose: Update status and plan the next week's work on the various CCB Shape Tools projects. Agenda for 10 May 2006 Shape Tools meeting Review ...

Previous week Agenda for 11 December 07 Shape Tools meeting Review prior weeks to do items Craig prepare for and meet with Cornelius, re: Hippo shape analysis Craig ...

Previous week Agenda for 11 January 2006 Shape Tools meeting Attending : Roger , Craig, Jeff, Duygu, Bae Cheol, Ivo Review prior weeks to do items "+" means "done ...

Previous week Agenda and Notes for 11 Nov 2008 Shape Tools meeting (no meeting holiday ) Active Projects JNI/C !ShapeTools interface modify !WarpTools to use !CurveMatch ...

Previous week Meeting Purpose: Status review of last week, plans for next week Agenda for 11 October 2006 Shape Tools meeting (Week 41-42) Review prior weeks to do ...

Previous week Agenda for 11 September 07 Shape Tools meeting Review prior weeks to do items Discussed causes of 'random spots' in test warps of flat surfaces To do ...

Previous week Meeting Purpose: Agenda for 12 April 2006 Shape Tools meeting Review prior weeks to do items X Craig 'to do' list for end of april X Craig, Jeff document ...

Previous week Agenda and Notes for 12 Aug 2008 Shape Tools meeting prev. weeks to do CS Send !ShapeTools web links to Mona CS Create a !ShapeTools library binary ...

Previous week Agenda and Notes for 12 Feburary 2008 Shape Tools meeting Review prior weeks to do items Discussed No meeting for two weeks. handling ill formed surfaces ...

Previous week Meeting Purpose: Status review of week 27, plans for week 28 Agenda for 12 July 2006 Shape Tools meeting (Week 28) Review prior weeks to do items cs ...

Previous week Agenda for 12 June 2007 Shape Tools meeting Review prior weeks to do items Craig plan for warp analysis alternative Craig improve point picking in ...

Previous week Agenda and Notes for 12 May 2009 Shape Tools meeting Ivo requested a cortical thickness pipeline Issues, status To Do Next meeting CS evaluate "tetrahedron ...

12 Oct 2005 Agenda Status of past weeks's work Introduced var. applications to R. Dutton (6 oct) Craig !InterpolateContour comparison with Paul's !RSP resampling ...

Previous week Meeting Purpose: Status review of last week, plans for next week Agenda for 13 December 2006 Shape Tools meeting (Week 51-52) Review prior weeks to do ...

CCB Shape meeting 13 Jul 2005 Items Discussed CCB meeting in November JNI Interfaces to R Restricting which data attributes are read into a shape Checking that the ...

Previous week Meeting Purpose: Status review of last week, plans for next week Craig Vertex selection in ShapeViewer Craig !GeodesicPath review Craig modify ...

Previous week Agenda and Notes for 13 May 2008 Shape Tools meeting prior meetings to do list CS Write pipeline for AutomaticStatisticalShapeAnalysis. CS DFS 2.0 ...

Previous week Agenda for 13 November 07 Shape Tools meeting Review prior weeks to do items Craig TWiki docs for MapContour, ContourTopologyChecker , InterpolateContour ...

Previous week Meeting Purpose: Status review of last week, plans for next week Agenda for 13 September 2006 Shape Tools meeting (Week 37-38) Review prior weeks to ...

Previous week Agenda for 14 2007 Shape Tools meeting Review prior weeks to do items Ryan get spline defintiions ( from D. Houle ?) Ryan redo spline sampler code ...

Last Meeting Agenda 14 Dec 2005 Attending : Roger,Craig, Duygu, Yongang, Daniel Valentino, Alexandre,Jeff, !BaeCheol, Byung-Woo Hong, Sesh, Ivo Email List Review ...

Previous week Meeting Purpose: Status review of last week, plans for next week Agenda for 14 February 2007 Shape Tools meeting (Week 7) Review prior weeks to do items ...

Previous week Meeting Purpose: Review Prior Development Cycle and assign general priorities for the next cycle Agenda for 14 June 2006 Shape Tools meeting Review prior ...

Previous week Agenda and Notes for 14 Oct 2008 Shape Tools meeting prev. weeks to do CS JNI interface to !ShapeTools readers CS Integrate triangle strip reader CS ...

Shape Tools 14 Sep 2005 Shape tools meeting summary, September 14, 2005 Present: Jeff Ma, Roger Woods, Yonggang Shi Vacation: Ivo Dinov, Craig Schwartz Bugs Shape ...

Previous week Agenda and Notes for 15 April 2008 Shape Tools meeting Discussed Dual Warp pipeline Comments and Concerns The superior frontal sulcus 'falls off' in ...

Previous week Meeting Purpose: Agenda for 15 February 2006 Shape Tools meeting Review prior weeks to do items "+" means "done", "-" means "in progress" X Craig complete ...

Previous week Agenda and Notes for 15 July 2008 Shape Tools meeting Discussed To do for Next meeting CS Fix shape viewer bugs CS create software download pacakges ...

Shape Tools 15 June 2005 Disussed: Introduction of !ShapeTools structure and intention for Cornelius and Yongang. Critique of !ShapeTools library. Give priority ...

Previous week Meeting Purpose: Agenda for 15 March 2006 Shape Tools meeting Review prior weeks to do items X Craig fix errors in library coordinate transformations ...

Previous week Meeting Purpose: Status review of last week, plans for next week Agenda for 15 November 2006 Shape Tools meeting (Week 46-47) Review prior weeks to do ...

Previous week Meeting Purpose: Status review of last week, plans for next week Agenda for 16 Aug 2006 Shape Tools meeting (Week 33-34) Review prior weeks to do items ...

Previous week (no notes for intervening meetings) Agenda and Notes for 18 Nov 2008 Shape Tools meeting prev. weeks to do Fly Wing modifications to use warp tools JNI ...

Previous week Agenda for 16 May 2007 Shape Tools meeting Craig Vertex Selection/ Shape Viewer Craig integrate ShapeStatistics, distribute to Katharine. Craig improve ...

Agenda: 16 Nov 2005, !ShapeTools Report on past week: craig OFF, Applet !ShapeView, Pipeline, Wiki web stats, surf. formats (byu), Latis, R, Outline of !ShapeIO ...

Previous week Agenda for 16 October 07 Shape Tools meeting Review prior weeks to do items Craig complete pipeline and needed tools to use !RigidQuaternionWarp to ...

Previous week Agenda and Notes for 16 Sep. 2008 Shape Tools meeting prev. weeks to do CS get status update of software download packages. CS (with BC) review ColorSurface ...

Previous week Agenda for 17 April 2007 Shape Tools meeting Review prior weeks to do items Ryan Create a self-contained application to register the fly wing data ...

CCB Shape Tools 17 August 2005 Agenda Status of To Do from last week TWiki CCB Tools MeiheXu SurfaceExtractionTutorialUsage use of individual login's Standard Test ...

Previous week Meeting Purpose: Status review of last week, plans for next week Agenda for 17 January 2007 Shape Tools meeting (Week 3) Review prior weeks to do items ...

Previous week Agenda for 17 July 2007 Shape Tools meeting Review prior weeks to do items Craig Complete !ContourVolume tool. Craig complete program to create a shape ...

Previous week Agenda and Notes for 17 June 2008 Shape Tools meeting prior meetings to do list Discussed 19 July CCB meeting Shape Smoorgasboord Simplifications to ...

Previous week Meeting Purpose: Update status and plan the next week's work on the various CCB Shape Tools projects. Agenda for 17 May 2006 Shape Tools meeting Review ...

Previous week Meeting Purpose: Decide work to be done in next 3 months. Agenda for 18 January 2006 Shape Tools meeting Review prior weeks to do items "+" means "done ...

Previous week Meeting Purpose: Status review of last week, plans for next week Agenda for 18 October 2006 Shape Tools meeting (Week 42-43) Review prior weeks to do ...

Previous week Agenda for 18 September 07 Shape Tools meeting Review prior weeks to do items Discussed problems with mapping vertices of triangles to / from the 2d ...

Previous week Meeting Purpose: Agenda for 19 April 2006 Shape Tools meeting Review prior weeks to do items X Ivo list of analysis script writers for various groups ...

Previous week Agenda and Notes for 19 Aug 2008 Shape Tools meeting prev. weeks to do CS investigate TWiki save error CS revise all !ShapeToolsIO writers to use ...

Previous week Agenda for 19 June 2007 Shape Tools meeting Review prior weeks to do items X !BaeCheol finish ShapeToImage application program. !BaeCheol Write UifReader ...

Meeting Notes, 19 October 2005 Next Meeting Tool building process (for which tools ?) requirements about what goes into them. who will use them. these (above) need ...

Previous week Meeting Purpose: Status review of last week, plans for next week Agenda for 20 December 2006 Shape Tools meeting (Week 52) Review prior weeks to do items ...

Previous week Meeting Purpose: Status review of last week, plans for next week Agenda for 20 February 2007 Shape Tools meeting (Week 8) Review prior weeks to do items ...

Agenda Review prior weeks ativiities Decide which features to include in next release (v1.1.0) of !ShapeTools library and !ShapeViewe Items Discussed Primate measuremnt ...

Previous week Meeting Purpose: Status review of last week, plans for next week Craig Vertex Selection Craig enable user to set clip. planes in ShapeViewer. Craig ...

Previous week Agenda and Notes for 20 May 2008 Shape Tools meeting prior meetings to do list CS debug obj conversion problems CS Write pipeline for AutomaticStatisticalShapeAnalysis ...

Previous week Agenda for 20 November 07 Shape Tools meeting Review prior weeks to do items Craig review and integrate the ShapeAttribute application Craig TWiki ...

Previous week Meeting Purpose: Status review of last week, plans for next week Agenda for 20 September 2006 Shape Tools meeting (Week 38-39) Review prior weeks to ...

Previous week Agenda for 21 August 2007 Shape Tools meeting Review prior weeks to do items !BaeCheol improve format of command line usage formatter !BaeCheol complete ...

Previous week Agenda for 21 December Shape Tools meeting Attending : Roger,Craig, Duygu, Yongang, ,Jeff, Byung-Woo Hong, Sesh Email List Review prior weeks to do items ...

Previous week Agenda and Notes for 21 Oct 2008 Shape Tools meeting prev. weeks to do Fly Wing modifications to use warp tools JNI bridge to shape tools Shape Density ...

Shape Tools 21 September 2005 Agenda Bugs !ShapeTools Ucf Parsing May have been fixed Need sample data Shape Viewer: The edges of diamond shaped UCF's are being ...

Previous week Agenda and Notes for 22 April 2008 Shape Tools meeting (discussed at separate meeting of 17 April) RC, CS, BC, RW create a list of pipeline feature ...

Previous week Meeting Purpose: Agenda for 15 February 2006 Shape Tools meeting Review prior weeks to do items "+" means "done", "-" means "in progress" x Craig issues ...

Previous week Agenda and Notes for 22 July 2008 Shape Tools meeting prev. weeks to do CS Fix shape viewer bugs CS create software download pacakges for shape tools ...

CCB / Shape Tools 22 June 2005 Meeting Agenda Review past week's work !ShapeViewer Critique (Jeff) (10) Questions (10) Need triangle strips ? Need holes Edge Face ...

Previous week Meeting Purpose: Agenda for 22 March 2006 Shape Tools meeting Review prior weeks to do items X Craig extend CGAL EL face set to non-triangular faces ...

Previous week Agenda for 22 May 2007 Shape Tools meeting Review prior weeks to do items Craig Vertex Selection/ Shape Viewer x Craig integrate ShapeStatistics, distribute ...

Previous week Meeting Purpose: Status review of last week, plans for next week Agenda for 22 November 2006 Shape Tools meeting (Week 47-48) Review prior weeks to do ...

Previous week Meeting Purpose: Status review of last week, plans for next week Agenda for 23 Aug 2006 Shape Tools meeting (Week 34-35) Review prior weeks to do items ...

Previous week Agenda and Notes for 23 December 2008 Shape Tools meeting To Do status CS ask Stott Parker to attend next weeks meeting (for suggestions on managing ...

Agenda 23 Nov 2005 To Do for This Week X Craig : complete !ShapeViewer applet download package X Craig : Schedule DIVE presentation of !ShapeViewer and other applications ...

(No meeting was held)

Previous week Agenda and Notes for 23 Sep. 2008 Shape Tools meeting prev. weeks to do CS write VTK PolyData reader CS Debug ShapeViewer problem reported by Ivo. CS ...

Previous week Agenda for 24 April 2007 Shape Tools meeting Review prior weeks to do items Enable Katharine and Dr. Conrad to run Medial Distance. !BaeCheol update ...

24 August 2005 Shape Tools Agenda Status !ShapeTools issues status !InterpolateContour other to do R interface !ShapeViewer issues/ status Review requirements review ...

Previous week Meeting Purpose: Status review of last week, plans for next week Agenda for 24 January 2007 Shape Tools meeting (Week 4) Review prior weeks to do items ...

Previous week Agenda for 24 July 2007 Shape Tools meeting Review prior weeks to do items !BaeCheol debug Yuan VTK !BaeCheol surface validation/correction (points ...

Previous week Agenda and Notes for 24 June 2008 Shape Tools meeting prior meetings to do list CS !ShapeViewer release (beta, to selected people) CS shape io gzip ...

Previous week Note: Meeting will not be held unless necessary. Meeting Purpose: Update status and plan the next week's work on the various CCB Shape Tools projects ...

Previous week TOC Meeting Purpose: project status update, decide next weeks tasks. Agenda for 25 January 2006 Shape Tools meeting Review prior weeks to do items " ...

Previous week Meeting Purpose: Status review of last week, plans for next week Agenda for 25 October 2006 Shape Tools meeting (Week 43-44) Review prior weeks to do ...

Previous week Meeting Purpose: Update status and plan the next week's work on the various CCB Shape Tools projects. Agenda for 26 April 2006 Shape Tools meeting Review ...

Previous week Agenda and Notes for 26 Aug 2008 Shape Tools meeting prev. weeks to do CS get BC's computer printing. CS review IFunction library code CS Plugin loader ...

Previous week Meeting Purpose: plans for week 30 and long range plans for the next six months Agenda for 26 July 2006 Shape Tools meeting (Week 30) tems Prev Week ...

Previous week Agenda for 26 June 2007 Shape Tools meeting Review prior weeks to do items Ryan Create a !MultigridPDESolver library from classes now in !ShapeTools ...

26 October 2005 CCB Shape Tools meeting Attending: Ivo, Daniel, Craig, Roger, Yongang, Duygu, Alex Timekeeper: Ivo Meeting Chair: Craig Agenda Report past week's ...

Previous week Meeting Purpose: Status review of last week, plans for next week Agenda for 26 September 2006 Shape Tools meeting (Week 39-40) Review prior weeks to ...

Previous week Meeting Purpose: Status review of last week, plans for next week Agenda for 27 February 2007 Shape Tools meeting (Week 9) Review prior weeks to do items ...

Agenda Review prior weeks ativiities Cornelius Make a list of possible Primate data measurements to be evaluated for !ShapeTools support. Jeff Load Save Colormaps ...

Previous week (no notes taken) Agenda and Notes for 27 May 2008 Shape Tools meeting prior meetings to do list Discussed To do for Next meeting

Previous week Agenda for 27 November 07 Shape Tools meeting Review prior weeks to do items Craig plan presentation Craig add RGB UIF decoder added to ShapeTools ...

Previous week Agenda for 28 2007 Shape Tools meeting Review prior weeks to do items Craig map Obj vertices to UIF Craig supply Ryan with code to translate encoded ...

CCB / Shape Tools 28 June 2005 Meeting Agenda Review past week's work X Craig DJV group presentation add Minc OBJ to !ShapeViewer Revise !ShapeTools packages. Meet ...

Previous week Meeting Purpose: Review Prior Development Cycle and assign general priorities for the next cycle Agenda for 28 June 2006 Shape Tools meeting Review ...

Previous week Agenda and Notes for 28 Oct 2008 Shape Tools meeting no notes posted To do for Next meeting Unscheduled

Shape Tools 28 September 2005 Agenda Bugs Status X Craig Prelimary requirements for remote file system browser X Craig Complete !ShapeDistance v1 X Craig Add ...

Previous week Agenda and Notes for 29 April 2008 Shape Tools meeting prior meetings to do list CS,RC,BC walkthrough warp pipeline, verify no file format dependencies ...

Previous week Agenda and Notes for 29 July 2008 Shape Tools meeting prev. weeks to do CS adapt !SurfStat (from K. Worsley) to !ShapeTools readers (Due 7/27/08) CS ...

Previous week Meeting Purpose: Agenda for 29 March 2006 Shape Tools meeting Review prior weeks to do items X Craig merge !CGALFaceSet and !IrregualarCGALFaceSet ...

Previous week Meeting Purpose: Status review of last week, plans for next week Agenda for 29 November 2006 Shape Tools meeting (Week 48-49) Review prior weeks to do ...

Previous week Meeting Purpose: Status review of last week, plans for next week Agenda for 30 Aug 2006 Shape Tools meeting (Week 35-36) Review prior weeks to do items ...

Previous week Agenda for 30 January 08 Shape Tools meeting (no notes taken) Review prior weeks to do items Discussed strategies for dealing with intersecting surfaces ...

Last Meeting Agenda 30 Nov 2005 To Do for This Week Jeff: Make checklist of !JFileChooser public methods Jeff: Write application using !VFSBrowser to print a list ...

Previous week Agenda for 30 October 07 Shape Tools meeting Review prior weeks to do items Craig write UIF reader Craig Create template GRID script Craig Automated ...

Previous week Agenda and Notes for 30 Sep 2008 Shape Tools meeting prev. weeks to do Discussed Zhuowen's probability boost code does not compile with gcc R needs updating ...

CCB Shape Tools Meeting 31 Aug 2005 Agenda Review "To Do" list from Last Meeting X Craig Complete !InterpolateContour X Craig look at DXF loading code for ways ...

Previous week Meeting Purpose: Status review of last week, plans for next week Agenda for 31 January 2007 Shape Tools meeting (Week 5) Review prior weeks to do items ...

Previous week Agenda for 31 July 2007 Shape Tools meeting Review prior weeks to do items Review prior weeks to do items Craig contact Nancy Sicotte (via Cornelius ...

Previous week Meeting Purpose: Status review of last week, plans for next week Agenda for 31 October 2006 Shape Tools meeting (Week 44-45) Review prior weeks to do ...

Meetings Version 1.0 09 March 2005 23 March 2005 30 March 2005 06 April 2005 13 April 2005 20 April 2005 27 April 2005 04 May 2005 11 May 2005 18 May 2005 20 May ...

Mesh to Mask This application rasterizes a closed surface mesh into a 3D inside/outside volume. It reads a surface mesh from a file, and writes as an output a 3D ...

(None thus far) Revised: 22 Nov 2006

(None thus far) Revised: 22 Nov 2006

!MeshTriangulation( v1x0 ) TOC{depth "2"} Overview Many surface mesh algorithms assume triangulated surface, however, many mesh's are composed of tiles that are not ...

(None thus far) Revised: 22 Nov 2006

1. A triangulation of a polygon is a set of non-intersecting diagonals which partitions the polygon into triangles. 2. Minimum length triangulation uses an algorithm ...

Ovreview This programming guide shows how to write Java classes that uses !ShapeTools library to triangulates face of a given surface whose shape is a convex polygon ...

Overview Many surface mesh algorithms assume triangulated surface, however, many mesh's are composed of tiles that are not triangles. A tool is needed that will read ...

JenniferTom 24 Mar 2006 The middle frontal gyrus is located in the frontal lobe of the brain. Location of the Middle Frontal Gyrus: Image was released into public ...

JenniferTom 24 Mar 2006 Located in the lobe between the superior temporal gyrus and the temporal gyrus.

Note: The following file format description is taken from this URL: http://www.bic.mni.mcgill.ca/~david/FAQ/lines format.txt This is a description of the polygons ...

Sample File (Cube.obj) P 0.3 0.9 0.61 60 1 8 0 0 0 1 0 0 1 1 0 0 1 0 0 0 1 1 0 1 1 1 1 0 1 1 0.57735 0.57735 0.57735 0.57735 0.57735 0.57735 0.57735 0.57735 0.57735 ...

Note: The following file format description is taken from this URL: http://www.bic.mni.mcgill.ca/~david/FAQ/polygons format.txt This is a description of the polygons ...

Minc Programming Notes !ShapeTools version 1.1.0 This TWiki topic provides notes on use of Minc Polygon Object files (!OBJ). Overview The Montreal Neurological Reseach ...

JenniferTom 22 Mar 2006 Shape measurement, a term used to describe measurement of brain structures (like the hippocampus, amygdala etc.), generally for group comparisons ...

MultigridPDELibrary This is a java library for solving partial differential equations. In particular, this library is equipped to solve two-dimensional linear second ...

Back Online CCB Calendar CCB Meetings CCB AHM Multilevel Image Segmentation and Integrated Bayesian Model Jason Corso Abstract: Robust and accurate segmentation of ...

JenniferTom 24 Mar 2006 Multiple sclerosis is an autoimmune disease in which the immuse system attacks the nervous system. It is characterized by the demyelination ...