This TWiki topic describes a way that the Rshape functions can be invoked from the command line, allowing them to be run non-interactively, nohup'ed and put into the ...

rShape An R package that enables R users to read data stored in !LONI !Ucf files. R has many packages available from the CRAN archive. The rJava R interface to Java ...

Installing rJava (and trivially rshape) into a user's private Rlibs library on an SGI Irix system: In the following example, the user's home directory is "/userHome ...

RACI Chart R Responsible person A Actions taken (Authorizes something, provides support, et. cetera) C Communicates or consults with this person I Inform this ...

JenniferTom 23 Mar 2006 RF (Radio Frequency)

JenniferTom 23 Mar 2006 Left is Right in a displayed image. This is also known as the Left handed coordinate system.

struct image dimension { / off size / int dim 3 ; / 0 16 3 / float pixdim 3 ; / 48 16 3 / } struct body { unsigned char intensity dim 0 dim 1 dim 2 ; }

Regular Discrete Data Tools This package contains a Java library and several command-line tools that can be used to store and manipulate floating point data that ...

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Table of Contents TOC{depth "2"} How do I create a !BufferedImage object from a regular discrete data object? boolean normalize true; String filename "myData.rdd ...

Regular Discrete Data Tools User Guide TOC{depth "2"} Overview This library intends to provide a comprehensive and flexible data model and implementation for arbitrary ...

Renamer A tool that simplifies renaming files. Project Components Documentation Project User's Guide v 1.0 Changes since version 1.0 Frequently Asked Questions Feedback ...

Renamer Project description User pages: Renamer a java application to rename a group of files to new names. New names may be constructed from scratch, or based on ...

Renamer User Guide TOC{depth "2} Overview a java application to rename a group of files to new names. New names may be constructed from scratch, or based on the values ...

JenniferTom 22 Mar 2006 the process of converting the polygonal or data specification of an image to the image itself, including color and opacity information (From ...

RenderLandmarks This application renders landmarks to an image. The landmarks are specified by an ASCII file with line-delimited points and space-delimited coordinates ...

Public web page of ReportToTransform !ReportToTransform Project Definition ( v1x00 ) TOC{depth "2"} Overview The ReportToTransform program creates a linear transform ...

ReporterToMatrix A program to translate the principal axis output from the ShapeReporter application into a transform matix that may be use by the ShapeTransform ...

- 22 Jun 2007 SIG Home As of June 21 Meeting Need to wrap inital call file for FSL Need to update Freesurfer for Cerebellum, specifically version 4.0 Versioning FSL ...

ResampleData2D User Guide Overview This application resamples data as specified by a warping regular discrete data object. The warp object may encode the displacement ...

CCB Generalized Linear Model (GLM): Voxel-Wise Regression Analysis of 3D Images TOC Overview GLM is a tool that allow one to efficiently compute Multiple Linear Regression ...

CCB STATMAPS Statistical Maps of Group Differences Based on Brain Images Back to Registration Challenges Page Overview STATMAPS is a stand-alone tool for statistical ...

RigidAtlas Overview Creates an atlas from a group of shapes whose vertices are homologous. Description File formats Any shape that may be read by the ShapeTools library ...

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Public web page of Rigid Atlas !Rigid Atlas Project Definition ( v1x01 ) TOC{depth "2"} Overview Write an application program used the RigidQuaternionTransform to ...

Rigid Atlas TOC{depth "2"} Command line arguments Argument Type Required Description Notes help flag No Prints help and usage information. version flag No Prints ...

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!RigidQuaternionTransform Table of Contents TOC{depth "2"} Overview Given two sets of homologous points, this program estimates the rigid transform that maps one ...

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Example Usage of Rigid Quaternion Transform Consider two ordered sets of points, which are homologous. This implies that there are an equal number of points in each ...

Rigid Quaterion Transform Frequently Asked Questions Table of Contents TOC{depth "2"} How do I use the output transform to change the coordinates of the vertices ...

Using !RigidQuaternionTransform TOC{depth "2} Overview RigidQuaternionTransform estimates the rigid transformation that best aligns two sets of homologous points ...

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Comparison of results from !InterpolateContour and the !RSP resampling protocol Abstract A simple Ucf SimpleDiamond.ucf containing two levels was prepared. The ...