JenniferTom 24 Mar 2006 S1 is located in the parietal lobe and is responsible for mediating touch, pressure, temperature and pain. There is differential representation ...

JenniferTom 24 Mar 2006 Located in the parietal lobe and aids in the discrimination of touch, pressure, temperature and pain.

Back Online CCB Calendar CCB Meetings CCB AHM SCIRun Problem Solving Environment PSEBio Tensor David Brayford and Martin Cole PI: Dr Christopher Johnson, David Brayford ...

CCB Special Interest Group on Bioinformatics (SIG-BIO) SIG Home SIG Meeting Schedule: Winter'06 CCB SIG Meeting Calendar CCB SIG-SEG site Inside CCB (password protected ...

CCB Special Interest Group on Diffusion Tensor Imaging (SIG-DTI) SIG Home SIG-DTI Forum Pages CCB SIG Meeting Calendar TOC Challenges HARDI DTI Data Processing Registration ...

CCB SIG-DTI Documentations SIG Home CCB SIG-DTI CCB SIG-DTI Tools TOC Main.KristiClark DOcs Kristi Clark's DOcs Main.NathanHageman Docs SIG-DTI Group Goals Main.VishalPatel ...

CCB Special Interest Group on Diffusion Tensor Imaging (SIG-DTI) Meetings SIG-DTI Home SIG Home CCB SIG Meeting Calendar 2009 TABLE{ sort "on" tableborder "1" cellpadding ...

CCB SIG-DTI Tools SIG Home CCB SIG-DTI CCB SIG-DTI Docs TOC Tools: Kristi Clark Kristi Clark's Tools Tools: Nathan Hageman Leviathan: a collection of DTI analysis ...

CCB Special Interest Group on Functional Magnetic Resonance Imaging (SIG-fMRI) SIG Home CCB SIG Meeting Calendar SIG-fMRI Members : TBD SIG-fMRI Chairs: Russ Poldrack ...

CCB SIG-fMRI Meeting, Thu., 03/06/2008, 2 PM, DIVE SIG Home CCB SIG Meeting Calendar Back to the SIG-fMRI Wiki Page Topics for discussion include: File format issues ...

CCB SIG-fMRI Meeting, Thu., 03/06/2008, 2 PM, DIVE SIG Home CCB SIG Meeting Calendar Back to the SIG-fMRI Wiki Page Topics for discussion include: File format issues ...

CCB SIG-fMRI Meeting, Thu., 06/21/2007, 12-1 PM, DIVE SIG Home CCB SIG Meeting Calendar Back to the SIG-fMRI Wiki Page Attendees: Minutes Mirella Roger's fMRI pre ...

CCB SIG-fMRI Meeting, Thu., 07/05/2007, 3-4 PM, DIVE SIG Home CCB SIG Meeting Calendar Back to the SIG-fMRI Wiki Page Attendees: TBD Minutes: TBD

CCB SIG-fMRI Pipeline Modules SIG Home CCB SIG Meeting Calendar Back to the SIG-fMRI Wiki Page Existent fMRI Pipeline Components : TBD fMRI Pipeline Components ...

Journal Club (JC) Meeting SIG Home CCB SIG Meeting Calendar TOC JC Members All LONI and CCB researchers CCB Groups CCB SIGs Meeting Schedule Every second and fourth ...

CCB Special Interest Group on Mapping and Registration (SIG-MAP) SIG Home SIG Meeting Schedule: Winter'06 CCB SIG Meeting Calendar SIG-MAP Challenges (June 2006) ...

CCB Special Interest Group on Mapping and Registration (SIG-MAP) Challenges (June 2006) SIG Home SIG Meeting Schedule: Winter'06 CCB SIG Meeting Calendar SIG-MAP ...

CCB Special Interest Group Meeting Calendar Each SIG Chair should revise as appropriate! CCB SIGs TABLE{ sort "on" tableborder "1" cellpadding "1" cellspacing "2 ...

CCB Special Interest Group Meeting CalendarSpring 2006 (September 18 December 22, 2006) CCB SIGs CCB SIG Calendar TABLE{ sort "on" tableborder "1" cellpadding "1 ...

CCB Special Interest Group Meeting Calendar Fall 2007 (Sept. 21 Dec. 22, 2007) CCB SIGs CCB SIG Calendar TABLE{ sort "on" tableborder "1" cellpadding "1" cellspacing ...

CCB Special Interest Group Meeting Calendar Fall 2008 (October 01 December 30, 2008) CCB SIGs CCB SIG Calendar TABLE{ sort "on" tableborder "1" cellpadding "1" cellspacing ...

CCB Special Interest Group Meeting Calendar Fall 2009 (Sept. 28 Dec. 20, 2009) CCB SIGs CCB SIG Calendar TABLE{ sort "on" tableborder "1" cellpadding "1" cellspacing ...

CCB Special Interest Group Meeting CalendarSpring 2006 (April 03 June 16, 2006) (Proposal 02/24/06!) Each SIG Chair should revise as appropriate! CCB SIGs CCB SIG ...

CCB Special Interest Group Meeting CalendarSpring 2007 (April 01 June 31, 2007) CCB SIGs CCB SIG Calendar TABLE{ sort "on" tableborder "1" cellpadding "1" cellspacing ...

CCB Special Interest Group Meeting Calendar Spring 2008 (April 01 June 30, 2008) CCB SIGs CCB SIG Calendar TABLE{ sort "on" tableborder "1" cellpadding "1" cellspacing ...

CCB Special Interest Group Meeting Calendar Spring 2009 (April 01 June 30, 2009) CCB SIGs CCB SIG Calendar TABLE{ sort "on" tableborder "1" cellpadding "1" cellspacing ...

CCB Special Interest Group Meeting CalendarSpring 2006 (June 16 September 15, 2006) (Proposal 02/24/06!) Each SIG Chair should revise as appropriate! CCB SIGs CCB ...

CCB Special Interest Group Meeting CalendarSummer 2007 (June 25 Sept. 20, 2007) CCB SIGs CCB SIG Calendar TABLE{ sort "on" tableborder "1" cellpadding "1" cellspacing ...

CCB Special Interest Group Meeting Calendar Summer 2008 (June 23 September 30, 2008) CCB SIGs CCB SIG Calendar TABLE{ sort "on" tableborder "1" cellpadding "1" cellspacing ...

CCB Special Interest Group Meeting Calendar Summer 2009 (July 01 Sept. 30, 2009) CCB SIGs CCB SIG Calendar TABLE{ sort "on" tableborder "1" cellpadding "1" cellspacing ...

CCB Special Interest Group Meeting Calendar Winter 2006 (Proposal 12/06/05!) (Proposal 02/24/06!) Each SIG Chair should revise as appropriate! CCB SIGs CCB SIG Calendar ...

CCB Special Interest Group Meeting CalendarWinter 2007 (January 08 March 31, 2007) CCB SIGs CCB SIG Calendar TABLE{ sort "on" tableborder "1" cellpadding "1" cellspacing ...

CCB Special Interest Group Meeting Calendar Winter 2008 (Jan. 10 March 31, 2008) CCB SIGs CCB SIG Calendar TABLE{ sort "on" tableborder "1" cellpadding "1" cellspacing ...

CCB Special Interest Group Meeting Calendar Winter 2009 (January 05 March 30, 2009) CCB SIGs CCB SIG Calendar TABLE{ sort "on" tableborder "1" cellpadding "1" cellspacing ...

CCB Special Interest Group on Neuroimaging Methods, Tools and Practices (SIG-NMTP) SIG Home CCB SIG Meeting Calendar SIG-NMTP Members : Main.YalinWang, Main.LokMingLui ...

CCB Special Interest Group on Partial Differential Equations (SIG-PDE) SIG Home CCB SIG Meeting Calendar SIG-PDE Members : Main.LuminitaVese, Main.YalinWang, Main ...

CCB Special Interest Group: Pipeline Neuroimaging Solutions (SIG-PNS) SIG Home CCB SIG Meeting Calendar Overview The Pipeline Neuroimaging Solutions (PNS) series ...

CCB SIG: Pipeline Neuroimaging Solutions (SIG-PNS) A Simple Global Surface Measurement T-Test (June 18, 2009) SIG Home CCB SIG-PNS TOC Overview This demonstration ...

CCB SIG: Pipeline Neuroimaging Solutions (SIG-PNS) Volume-based statistical analysis of group/cohort differences, FDR p-value correction (May 21, 2009) SIG Home ...

CCB SIG: Pipeline Neuroimaging Solutions (SIG-PNS) DIRAC: Diffusion Imaging Reconstruction and Analysis Collection, Main.VishalPatel (July 15, 2009), DIVE SIG Home ...

CCB SIG: Pipeline Neuroimaging Solutions (SIG-PNS) Shao-Ching Huang, Parallel Computing (08/13/09, 10-12 Noon), DIVE SIG Home CCB SIG-PNS SIG-DTI TOC Logistics Place ...

CCB SIG: Pipeline Neuroimaging Solutions (SIG-PNS) Minimum Distance Template (MDT) Atlasing Pipeline (October 16, 2009; 2:30 PM, DIVE) SIG Home CCB SIG-PNS TOC Logistics ...

CCB SIG: Pipeline Neuroimaging Solutions (SIG-PNS) fMRI Neuroimaging Solutions using the LONI Pipeline, Main.JackVanHorn (08/13/09, 12 PM), DIVE SIG Home CCB SIG ...

CCB SIG: Pipeline Neuroimaging Solutions (SIG-PNS) LONI DTI Tools, Main.KristiClark (07/30/09, 10:00 AM), DIVE SIG Home CCB SIG-PNS SIG-DTI TOC Logistics Place/Time ...

CCB SIG: Pipeline Neuroimaging Solutions (SIG-PNS) Leviathan+MiND processing, analysis visualization of DWI data, Main.NathanHageman(09/10/09, 10 AM), DIVE SIG Home ...

CCB Special Interest Group on Segmentation and Object Detection (SIG-SEG) SIG Home CCB SIG Meeting Calendar CCB SIG-SEG site Inside CCB (password protected) Segmentation ...

CCB Special Interest Group on Statistical Modeling (SIG-STAT) SIG Home SIG Meeting Schedule: Winter'06 CCB SIG Meeting Calendar CCB SIG-SEG site Inside CCB (password ...

CCB Special Interest Group on Statistical Modeling (SIG-STAT) Challenges July 2006 SIG Home SIG-STAT Home-Page 1. A integrated way of learning the complex appearances ...

CCB Special Interest Group on Brain Storming and Center Organization (SIG-STORM) SIG Home CCB SIG Meeting Calendar SIG-STORM Chair : Main.StottParker Members: All ...

CCB Special Interest Group on Brain Storming and Center Organization Meeting 10/13/06, T-Room SIG Home CCB SIG-STORM page Chair: Main.StottParker Agenda : TBD TBD ...

CCB Special Interest Group on Multi-Resolution Representation of Biological Shape (SIG-WAVE) SIG Home CCB SIG Meeting Calendar SIG-WAVE Members : Bin Dong, Main.YonggangShi ...

CCB Special Interest Group on Multi-Resolution Representation of Biological Shape (SIG-WAVE) SIG Home CCB SIG Meeting Calendar SIG-WAVE Home page Spherical Wavelets ...

CCB Special Interest Group on Multi-Resolution Representation of Biological Shape (SIG-WAVE) SIG Home CCB SIG Meeting Calendar CCB SIG-WAVE Page Spherical Wavelets ...

CCB Special Interest Group on Multi-Resolution Representation of Biological Shape (SIG-WAVE) Mini-Porject of 3D Representation of SHape using Poisson Equation SIG ...

JenniferTom 23 Mar 2006 Signal to Noise ratio is the ratio between the amplitude of the received signal and background noise, which tends to obscure that signal. ...

JenniferTom 23 Mar 2006 SPECT imaging uses a camara to acquire images from multiple angles which can be used to form a 3D image. Related Terms: PET Camara Radiopharmaceuticals ...

JenniferTom 23 Mar 2006 Saggital describes a plane, slice or section of the body cutting from front to back through the saggital suture of the skull, and continued ...

Sample Shape data files

Sample Landmark Warp User Guide TOC{depth "2"} Overview This application takes a landmark warp and takes samples at regular spacings in each dimension. Since the ...

JenniferTom 22 Mar 2006 Frequency Shimming Echo Gradients SNR Signal to Noise Ratio FWHM Full Width Half Maximum

JenniferTom 24 Mar 2006 Schizophrenia generally is diagnosed in the late teens and twenties. Schizophrenia is a mental disorder that has many symptoms such as delusions ...

The CCB Scientific Advisory Board

ADC Seg to !MultiTracer UCF Hippocampus Mapping Table of Contents TOC{depth "2"} Overview Many sets of contours were traced with the program Seg. These are incompatible ...

BorisGutman 25 Aug 2009 This program uses the original Chan-Vese algorithm to do 2D segmentation of the corpus callosum. It is assumed that the input is a 3D analyze ...

ShapeToDX functional requirements Command line interface Translates any shape tools readable input mesh into an !OpenDX general format output file Requires confirmation ...

No permission to read topic CCB.Shape perhaps you need to log in?

BorisGutman 04 Feb 2009 Shape Atlas Maker Overview This workflow is designed to robustly register and spatially align arbitrary genus-zero shapes, and create an ...

CCB !ShapeTools !ShapeAttribute TOC{depth "2"} Overview Adds a list of scalar values to a shape, as a per vertex attribute. This program may be used to associate ...

!ShapeAttribute Project Definition TOC{depth "2"} Overview This application will set the values of a Shape's vertex attribute from a table of values. Arguments and ...

ShapeAttribute feature wish list be able to add a named scalar attribute with a constant increment to each vertex.

!ShapeAttributeInputTableMaker Project Definition This application will translate output files of the !ShapeReporter program to a table file format is understood ...

!ShapeAttribute TOC{depth "2"} Overview Adds a list of scalar values to a shape, as a per vertex attribute. This program may be used to associate a table of numbers ...

ShapeAverage ShapeAverage averages the coordinates, and optionally per-vertex attributes, of a population of shape files. Project Components Documentation User Guide ...

none thus far

none thus far

none thus far

Shape Average User Guide Overview The !ShapeAverage program reads a group of shape files and writes as output a shape whose vertices are the simple average of the ...

(In Planning) This program will map a scalar value or values into the color attribute of a shape data file. Scenario 1 Input: A shape data file in a format that supports ...

Shape Conversions Purpose tools to convert between different types of shape representations. Shape conversion Meeting Notes Shape conversion outline of Prototype ...

CCB Shape Curvature Project A common problem in analysis of shapes is to find the curvature of the surface (hull) defined by the shape. No tools exist for the data ...

ShapeCurvature Algorithms Revision 1 date: 11/18 Given a point (p0) connected by straight lines to each member of a set of different points (p1,..., pN), and an ...

Shape Curvature Known Bugs and Problems (None thus far) Revised: 22 Nov 2006

Shape Curvature Change Log Version 1.0 Implemented Gaussian Curvature. Added ability to set value used to indicate 'inifinite' curvature. Version 1.1 Added Mean curvature ...

Shape Curvature Frequently Asked Questions (None thus far) Revised: 10 May 2006

CCB Shape Curvature Requested Features $ Feature: A short (1 or 2 words) name for the feature. $ Description: A longer description of the feature. $ Version: The ...

Shape Curvature Glossary Discrete Gaussian Curvature : The diference of 2 PI and the sum of the angles between adjacent faces adjoining a vertex. 2Pi (a1 a2 a3 ...

Status Summary Version 1.0.0 TABLE{ sort "on" tableborder "1" cellpadding "1" cellspacing "2" headerbg "#DFE5E9" headercolor "#99000F" databg "#AACCCC, #FFFFFF" ...

ShapeCurvature v1x1 Project Management {TOC("level 2")} Staff Lead Programmer: Shin, Bae Cheol Project Manager: Craig Schwartz Project Sponsor: Roger Woods Project ...

Prototype Requirements Java 1.4.1 will be used the CCB !ShapeTools library will be used Source code will be formatted in accord with the !ShapeTools formatting conventions ...

Requirements Command line actions "-version" prints a version string to the standard output , program then exits with status 0. Version strings conform to the specifcations ...

ShapeCurvature task details Version 1 TABLE{ sort "on" tableborder "1" cellpadding "1" cellspacing "2" headerbg "#DFE5E9" headercolor "#99000F" databg "#AACCCC, ...

!ShapeDataPrinter Version: 1.0 TOC{depth "2"} Overview This program extracts data from any ShapeTools-compatible shape and prints it to ASCII on standard output. ...

The user application page is MAST.ShapeDensity !ShapeDensity Project Definition TOC{depth "2"} Overview The processes that create surfaces describing anatomical surfaces ...

!ShapeDescriptionPluginProjectDescription Public web page : (none) TOC{depth "2"} Overview Success Description Restrictions, Exclusions, Limitations People Affected ...

!ShapeDistance TOC{depth "2} Documentation ShapeDistance Usage Guide Frequently Asked Questions

ShapeDistance Frequently Asked Questions TOC{depth "2} How do you determine which vertices are homologous in two complex shapes ? That depends on the particulars ...

Shape Distance Requirements Definition ( v1x1 ) here is the public page for the ShapeDistance. TOC{depth "2"} Overview This application measures the distance between ...

CCB !ShapeGroupDistance An application program that calculates various kinds of distance between a reference shape and other shapes. Project Components Documentation ...

!ShapeGroupDistance Usage Guide TOC{depth "2"} This program computes the distance between the vertices of a group of homologous shapes. These distances are written ...

CCB !ShapeGroupMeasure An application program that calculates various scalar measurements comparing a reference shape and a group of other shapes. Project Components ...

The user application page is ShapeGroupMeasure !ShapeGroupMeasure Project Definition TOC{depth "2"} Overview This application will calculate a measurement for each ...

Shape Tools File Format Parser Programmers Guide Purpose This guide describes how a Java programmer may write a file format parser that reads a geometrical shape ...

The user application page is MAST.ShapeJacobian !ShapeJacobian Project Definition TOC{depth "2"} Overview The processes that create surfaces describing anatomical ...

CCB !ShapeMeasurement The !ShapeMeasurement calculates various measurement of a surface mesh at each vertex, and write output with these computed values. These values ...

Version 1.0.1 March 25, 2009 The first version released

measurement Project Definition User guide : ShapeMeasurement This application will compute various measurement at each vertex of a given shape. TOC{depth "2"} Restrictions ...

Examples of common usage In these examples we assume that the !ShapeMeasurement application is saved in a file named !ShapeMeasurement.jar. Ex 1) Print a usage summary ...

!ShapeMeasurement FAQ TOC{depth "3"} What would be output file type if I don't specify output file type? The output type will be the same as input file type if input ...

!ShapeMeasurement Quick Reference TOC{depth "3"} Summary Table Argument Description textout Select output file type as text file type. barycentric Use barycentric ...

Overview The !ShapeMeasurement reads a surface mesh from a data file and computes various measurements of the surface at each mesh vertex which are a property of ...

Revised 5 April 2006

Revised 5 April 2006

!ShapeProgram Project Definition ( v1x01 ) TOC{depth "2"} Overview A summary of the project Restrictions, Exclusions, Limitations restriction one restriction two ...

Revised 5 April 2006

Revised 5 April 2006

CCB Shape Program Project Feature Wish List $ Feature: A short (1 or 2 words) name for the feature. $ Description: A longer description of the feature. $ Version ...

Revised 5 April 2006

Revised 5 April 2006

Revised 5 April 2006

User's Guide Revised 12/21/06 #TableOfContentsAnchor TOC{depth "2"} Command Line Summary Examples of common usage Common Problems "Out of Memory" if, while running ...

Revised 5 April 2006

CCB Shape Program Project Wish List Revised: 24 July 2006 Applications FKU surface triangulation tool Find distance of a shape's vertices from a single point (E ...

CCB Shape Program's Future Plans and development Roadmap July 2006 Dec 2006 Revised: 26 July 2006 For the next six month period we have the following general strategies ...

ShapeROI Overview: This is a tool kit that will provide classification of vertexes in a manifold mesh from region of interest which may be a set of points, open curve ...

Coming Soon

NA

Coming Soon

ShapeROI Project Definition This is a tool kit that will provide classification of vertexes in a manifold mesh from region of interest which may be a set of points ...

Coming Soon

InteriorClassifier Example 1. Use Vector getInterior(Vector polygon, boolean isBoundaryInclusive). Shape shape null; Vector polygon null; int boundary {41, 35, 29 ...

Coming Soon

NA

Coming Soon

CCB !ShapeReporter The ShapeReporter examines the properties of an input shape and reports it's results to the user. Examined characteristics include: Testing for ...

September 15, 2008: Support reading a list of shapes and perform a list of inspection over the shapes. September 23, 2008: Support html output. September 24, 2008 ...

ShapeReporter Project Definition This application will report results of various kinds of examination over a shape file. The examples of examinations will includes ...

Argument Description Argument Requirement faceIntersection Find if any of faces collide each other None Triangle mesh is required. Shape is required. listIntersectingFaces ...

TOC{depth "2"} Examples of using ShapeReporter application. General Usage Example 1. Obtain shape file from file path, data/sampleShape.off Find a list of vertices ...

Table of Contents TOC{depth "2"} How do I add another sub class of !ShapeInspector class? Obtain problem statement. For example, average curvature of all vertices ...

!ShapeReporter Quick Reference TOC{depth "3"} Summary Table Argument Description Argument Requirement area Calculate surface area. None Either triangle or quad mesh ...

Shape Reporter User's Guide for !ShapeReporter version 1.1.1 TOC{depth "3"} Overview This application will report results of various kinds of examination over a shape ...

CCB !ShapeSplit Project Components Documentation ShapeSplit User's Guide v 1.0 Changes Log A list of Frequently Asked Questions. Feedback Project Bug List (v1.0) ...

no changes yet

Public web page of ShapeSplit !ShapeSplit Project Definition ( v1x0 ) TOC{depth "2"} Overview ShapeSplit partitions one or more shapes into one or more pieces. Expected ...

ShapeSplit Frequently Asked Questions TOC{depth "2"} No Questions Yet

Shape Split Table of Contents TOC{depth "2"} Overview ShapeSplit splits a shape file into pieces. The current version, 1.0.0 has minimal functionality. The program ...

ShapeStatistics ShapeStatistics Calculates various per-vertex scalar statistics describing a population of input shapes. Project Components Documentation User Guide ...

none thus far

ShapeStatistics Change Log TOC{depth "2"} Version 1.1 13 Feb 2008 made file specification types cumulative, instead of exclusive improved pipeline descriptor support ...

none thus far

ShapeStatistics feature wish list Feature Wish Date Implemented notes add Standard Deviation statistic 13 feb 08 14 Feb 08 Non-Parametric permutations 19 February ...

!ShapeStatistics User Guide version 1.1 TOC{depth "2"} Overview This program calculates a variety of statistical measurements on the vertices of a population of shape ...

not yet available

CCB !ShapeTools !ShapeTTest Calculates Independent and Dependent T-Test between measurements on two populations. P-Values, calculated from the T-Statistics using ...

!ShapeTTest Usage Guide version 1.1.0 Computes a T-Test on two population samples TOC{depth "2"} Input Data Requirements The sample values must be written into two ...

CCB !ShapeToDX A description of the problem solved by the project. A description of the project's purpose and expected result or contribution. A description of the ...

none thus far

none thus far

CCB !ShapeToDX ShapeToDX is an application program that translates all shape file format that can be read by the CCB !ShapeTools library into an !OpenDX general format ...

none thus far

none thus far

!ShapeToImage An application to create an image volume mask from the vertices in a Shape file. the current version of !ShapeToImage essentially traces the edges and ...

none thus far

!ShapeToImage Application User's Guide Version 1.0 TOC{depth "2"} Overview This applicaiton creates an image file from a given shape. This program constructs image ...

!ShapeToImage Project Definition See: ShapeToImage TOC{depth "2"} Project Definition An application to create an image volume mask from the vertices in a Shape file ...

ShapeToObj This is an application which converts an arbitrary !ShapeTools-compatible surface file to a Minc Obj polygon file. Since not all shapes have an equivalent ...

ShapeToObj Bug List

ShapeToObj Change Log

ShapeToObj Frequently Asked Questions TOC{depth "2"} How do I ...

ShapeToObj User's Guide Version 1.0 TOC{depth "2"} Requirements This Java program requires that Java version 1.5, or greater, be installed on your computer. Overview ...

Public ShapeToObj Page !ShapeToObj Project Definition ( v1x01 ) TOC{depth "2"} Overview This project will produce a Java application that reads a surface from an input ...

ShapeToObj Feature Wish List No wishes yet recorded

Converting floats and doubles to ASCII text for storage For purposes of readability and interpretation, it is often useful to store floats and doubles as plain text ...

Note: Product Name is the CVS module name TABLE{ sort "on" tableborder "1" cellpadding "1" cellspacing "2" headerbg "#DFE5E9" headercolor "#990000" databg "#CCCCCC ...

Most of this is from : http://www.mozilla.org/projects/mathml/update.html Install !MathML fonts Reference : http://www.mozilla.org/projects/mathml/fonts/ Get the ...

CCB Shape Program Portable Geometry Tools Shape Tools Program mission : Provide the CCB community with portable tools that support the modelling, analysis and display ...

Shape Tools The Shape Tools library project has been renamed to Shape Tools Program

Shape File formats supported by the ShapeTools library TABLE{ sort "on" tableborder "1" cellpadding "1" cellspacing "2" headerbg "#DFE5E9" headercolor "#990000" databg ...

Project Software Development Recomendations Development Clear, written software requirements. Unit testing. Frequent CVS check-ins of source code. Schedule Early ...

Review of version 1.0.0 development cycle: What Worked: Clear weekly "to do" lists. Unit testing. Summaries of meetings. Assistance writing (!ShapeViewer) documentation ...

Review of Shape Tools Library v. 1.2.0 development cycle What Worked: What did not work: Lessons Learned

Shape Tools Projects Version 1.0 Project Plan Version 1.0 ShapeTools Library Documentation Examples of Shape Tools library usage ShapeTools Doc 10 May 2005.jar ...

CCB Shape Program Project Template A description of the problem or need motivating the project. A descriptiono the expected results of the project. A description ...

#MayProductListAnchor April / May 2006 Product list ShapeTools library ShapeViewer VirtualFileSystemBrowser DXJava library InterpolateContour Extract4DUcfAttributes ...

CCB May 2007 Meeting Planning Schedule Wednesday, March 14 Journal Club Current programs announcement handout. Friday, March 16 Establish Loni Subversion code archive ...

Laboratory Purpose Essential Personell Dr. Toga Grace Liang Rico Magispoc Victor Chata Ivo Dinov Ucla Timesheet Information (www.timesheet.medsch.ucla.edu) What The ...

External and Special Feature requests for !ShapeTools products. EDITTABLE{ } Who Organization Email What Req Date Notes Dr. Carstens Konrad University of Muenster ...

Status Summary TOC{} (Updated 23 December 2008) Master Project List 0 Not done In progress Complete Note: this list is in alphbetical order EDITTABLE{ } Software ...

Comments about using !ShapeTools During the ... meeting, I browsed through the !ShapeTools lilbrary documentation and examples. Very nice job. I think, in twenty ...

TOC{depth "2"} Old Applications and libraries ShapeTools library ShapeViewer VirtualFileSystemBrowser DXJava library InterpolateContour Extract4DUcfAttributes ShapeDistance ...

Minc Obj Lines Writer ( v1x01 ) TOC{depth "2"} Overview Add the capability to write a Minc "Lines" Obj file. Restrictions, Exclusions, Limitations Ascii files only ...

Using Shape Tools applications Nearly all !ShapeTools applications are written in the Java programming language. To use them, you must have installed a Java 1.5 compatible ...

!ShapeTools Applications TOC{depth "2"} A list of !ShapeTools applications These applications are written and supported by the Shape Tools software group. Software ...

Documentation ShapeToolsApps Java Doc v1.0.1

Change Log. Version 1.0 $ v 1.0.1d0 : 16 March 2009 now considers multiple adjacent spaces in ascii matrix files to be one space.

!ShapeTools Plugin project definition Public web page : (none) TOC{depth "2"} Overview Add code to write !BrainVisa mesh data files as Ascii Big-Endian binary Success ...

Last Upate : 11 May 2005 Shape Tools Library Bugs Status Description Notes Reported Fixed 10 May Surface Quad Coordinates are wrong 10 May

Shape Tools Bulletin 10 June 2009 TOC{depth "2"} Announcements Craig will give a series of four short (20 30 min) SIG-PNS presentations of !ShapeTools applications ...

Shape Tools Bulletins Archive 10 June 2009

!ShapeTools Contour Topology checking Protocol TOC{depth "2"} Introduction An outline of the analysis To perform this analysis, the following applications will be ...

RACI chart Non Convex Polygon EDITTABLE{ } Activity Start Wk End Wk ExpEnd Wk BC CS RW ExpHrs ActHrs !ExpHr Write overview requirement 36 0 36 RA AI 4 3 1 Brain Storm ...

Documentation ShapeToolsCore Java Doc v1.3.11 Revision Log

Revision 1.3.11 Changed the element index of all IAttribute classes from a 'long' to an 'int' added asDouble(), asFloat(), asLong(), asInt(), asShort(), asByte() ...

Projects currently under development by ShapeTools Shape Viewer : Various improvements to the !ShapeViewer ShapeTools Library : A java library providing support functions ...

CCB !ShapeToolsData A java library for reading data from a variety of input sources and writing data to a variety of output sources. Project Components Documentation ...

!ShapeTools Data Analysis Protocols TOC{depth "2"} Introduction This web page describes some neurological data analysis protocols that may be performed with the ...

ShapeToolsData Library TOC{depth "2"} Overview The !ShapeToolsData library provides a common I/O interface that allows java applications to read and write to a variety ...

Shape Tools Development Plan Version 1.0 ShapeTools Library ShapeViewer Next Versions S!hapeTools Library Load Minc Objects Use with algorithm developers reorganize ...

Quick Download Links Links for popular !ShapeTools software ShapeViewer the ShapeViewer SurfaceWarpTools implements the Surface Warp Protocol ShapeTools libraries ...

Fluid Warp Protocol TOC{depth "2"} Overview Many neurological analyses use a sophisticated fluid warp to map into a common reference system the brain structure surfaces ...

False Discovery Rate ( v1x0 ) TOC{depth "2"} Overview Commonly used methods of controlling errors in determining which elements of a set of measured values are statistically ...

CCB Shape Tools Library Alpha test feedback Please evaluate with respect to these categories: Quality Features Performance Other .... Please add your initials to ...

LONI FIle Format Notes Neurological File formats used by LONI divide principally into three categories: Surfaces, Contours and Voxel images. The diversity of application ...

Short Name Long Name Defining Organization Package Reader Class Writer Class Notes Supports Per-Vertexattributes Ucf Universal Contour File Laboratory of Neuro-Imaging ...

Shape Tools Fly Wing Protocol version 1.0 TOC{depth "2"} Overview This analysis uses 2d landmark warping to construct a map relating sets of landmarks. The resulting ...

Shape Tools Fly Wing Protocol version 2.0 TOC{depth "2"} Overview This protocol analyzes a set of wings of several species of fly using landmark-based warping tools ...

The contents of the web page are a copy of the original, found here: http://wideman-one.com/gw/brain/fs/surfacefileformats.htm Last edit: 05-08-29 Graham Wideman ...

ShapeTools Function Library A Library providing support for use of mathematical functions. ( no user documentation has yet been written )

ShapeGroupMeasure Compares a reference shape and a group of other shapes. It's output may be analysed by ShapeTTest (obsoletes ShapeGroupDistance) .

(None thus far) Revised: 22 Nov 2006

(None thus far) Revised: 22 Nov 2006

Geodesic Distance Project Definition ( v1x0 ) TOC{depth "2"} Overview Provides classes that find the minimum geodesic distance between two connected vertices of a ...

Not Available BaecheolShin 14 Dec 2006

(None thus far) Revised: 22 Nov 2006

Dijkstra's algorithm is a greedy algorithm that solves the single-source shortest path problem for a directed graph with nonnegative edge weights.

The main algorithem consists of two parts such as getting initial approximation curve and the path correction step. For correction of a path, each iteration point ...

Not Available !BaecheolShin 16 Feb 2007

Not Available !BaecheolShin 16 Feb 2007

ShapeTools Geometry Surface Data Structures Name Description Implementing Class Notes CGAL Edge List CGAL directed Edge list. !CGALFaceSet Contains face face incidencies ...

How to create a LONI Software Download Package TOC{depth "2"} Download Package Requirements For each software download package, the software download archivist needs ...

TOC{depth "2"} Documentation ShapeToolsIO Java Doc v1.4.0 ShapeToolsIO Java Doc v1.4.10 Technical Notes ShapeIOProgrammersGuide

ShapeToolsIOLibrary project plans Changes Improve batch file read caapbility of !ShapeToolsBatchReader class modify edu.ucla.loni.ccb.shapeio.util.ShapeToolsBatchReader ...

RACI Chart RACI chart !ImageJ Plugin Reader EDITTABLE{ } Activity Start Wk End Wk ExpEnd Wk BC CS RW ExpHrs ActHrs !ExpHr Understand problem 39 39 39 RA CI 4 8 4 ...

ShapeTools Image Library TOC{depth "2"} Overview Provides a simple library that reads LONI specific 2D UIF image files. Documentation Java Doc v1.1.0 Changes since ...

none thus far

none thus far

none thus far

none thus far

K Ring Neighborhood This class finds all vertices which are reachable by crossing k or less edges from a given source vertex. The number of edges between two vertices ...

K Distance Neighborhood TOC{depth "2"} Version 1.0 Overview The number of edges between two vertices are counted along the shortest path connecting them. Problem ...

A simple example that reads file and finds neighbor vertices (two edges away) of source vertex index 1. public static void main(String args) { Shape shape null; int ...

Ovreview This programming guide shows how to write Java classes that uses !ShapeTools library to finds all vertices which are reachable by crossing k or less edges ...

Shape Tools Library Version 1.2.0 ShapeTools Library A Definition of a Shape. Feature Wish List Documentation Shape Tools Libraries !JavaDoc Java Doc v1.2.0 Java ...

Ascii Numeric Parser TOC{depth "2"} Version 1.0 Overview A set of classes that read and write ascii representations of number without losing precision. Restrictions ...

Library Bug list v 1.1 !ShapeIO plugins do not translate betweeen metadata and IIOMetadata DOM trees. cs

Change Log Shape Tools Library Version 1.1 Reorganized packages to reduce coupling between Shape and Shape IO classes Interface class names now start with "I" (except ...

!ShapeTools Code Review Date: Nov 15-21, 2006 TOC{level "2"} Items Reviewed: interface to !FaceSet, !EdgeSet, !PointSet !IrregularEdgeSEt::getConnectedNeighbors( ...

ConvexHull3D When n points in 3 dimensional space are given, sometime we would like to see only exterior of all the points. In another word, we would like to construct ...

!Shape Project Definition Template ( v1x0 ) TOC{depth "2"} Overview Many surface mesh algorithms assume surface whose faces are convex polygon, however, it is possible ...

Overview of the Shape Tools download package libraries The !ShapeTools software divides into applications and libraries. Because not all applications require all ...

Shape Tools Library CCB Tools MeiheXu SurfaceExtractionTutorialUsage Examples How To Compile a !ShapeTools program Compile by: javac classpath !ShapeTools.jar example ...

Shape Tools Library CCB Tools MeiheXu SurfaceExtractionTutorialUsage Examples Shape Tools Library version 1.1 Index How to compile a !ShapeTools library program get ...

Source code of example !ShapeTools programs ShowVersion prints the !ShapeTools library version Center of Ucf reads coordinates of ucf points and computes their center ...

Frequently Asked Questions #TableOfContentsAnchor TOC{depth "2"} Read a Shape File To read a file without knowing in advance the format of the shape data contained ...

FaceSetOrientationNormalizer A description of the problem or need motivating the project. Many surface mesh algorithms assume that the faces in a surface have a ...

False Discovery Rate This project will allow the users to identify active voxels in neuroimaging data. Project Components Feature Wish List Documentation False Discovery ...

Feature Wish List for CCB !ShapeTools Library $ Feature: A short (1 or 2 words) name for the feature. $ Description: A longer description of the feature. $ Version ...

Geodesic Distance A widely used definition of geodesic curve is a shortest path between two points on the surface. Geodesic curves are demanded in many areas of science ...

RACI Chart RACI chart !Geodesic Distance EDITTABLE{ } Activity BC CS RW ExpHrs ActHrs !ExpHr !ActHr Write overview requirement RA AI 4 4 0 Brain Storm research RA ...

Shape Tools Glossary $ !Attribute : data associated with a shape that is not part of it's geometry. Examples include: the color of a vertex or the value of a datum ...

ImageJ Plugin Reader The project creates a shape that represent 2D section of an image. This project will enable the !ShapeTools library to create a shape that represents ...

Examples of Using !ShapeTools from within Matlab TOC{depth "2"} Create a Matlab shape using the matlabTriangulation method. Create a shape, in Matlab, from a set ...

QuadResampler A description of the problem or need motivating the project. Many algorithm requires triangle meshes. A description the expected results of the project ...

MeshTriangulation A description of the problem or need motivating the project. Many surface mesh algorithms assume triangulated surface, however, many mesh's are ...

NonConvexPolygonTriangulation A description of the problem or need motivating the project. The simple mesh triangulation algorithm assumes surface whose faces are ...

CCB SIG-SHAPE SIG Home CCB SIG-SHAPE Home Page 1. Complete efforts to make standard analyses available to all users (i.e., those outside LONI). This will involve ...

Sub Project Name TOC{depth "2"} Version The version of the sub project Overview A description of the problem addressed by the project. Restrictions, Exclusions, Limitations ...

ShapeTools library requirements v 1.1.0 Requirements Revision : 03 August 2005 Apply to Library Version: 1.1.0d1 Read Minc Ascii Obj Read Minc Binary Obj Write Minc ...

Library Enhancements v 1.3 DXF IO classes Shape partition classes separate a shape into a collection of non-overlapping components. Able to re-join components when ...

RACI Chart For the Shattuck file format reader, v1 0 Start Wk Week in which item was started End Wk Week in which item was completed Exp End Wk Week in which item ...

!David Shattuck's File Format Reader TOC{depth "2"} Overview This project is a file reader for David Shattuck's file format (also known as DUFF). A reader and a writer ...

Shortest Path A widely used definition of geodesic curve is a shortest path between two points on the surface. Geodesic curves are demanded in many areas of science ...

Generic !ShapeIO Test TOC{depth "2"} Overview This is a test system used to verify that a !ShapeIO package is working correctly. This can automatically be used with ...

TestIO Raci Chart Start Wk Week in which item was started End Wk Week in which item was completed Exp End Wk Week in which item was expected (planned) to end. ...

CCB BM file format reader TOC{depth "2"} Version 1.0 Overview A !ShapeTools !ShapeIO reader that will read into a !ShapeTools shape data stored in the file format ...

CCB BM file format reader TOC{depth "2"} Version 1.1 Overview A !ShapeTools !ShapeIO reader that will read into a !ShapeTools shape data stored in the file format ...

Notes on programming applications for use with the LONI Pipeline The LONI Pipeline makes many applications easier to use and increases their availability. The web ...

This library was previously part of the ShapeToolsCore library. A guide to converting applications to use this library is here.

Shape Tools math Library TOC{depth "2"} Overview Porting Guide This sections gives suggestions to converting programs to use the newer library. List of Changes A ...

!ShapeTools Medial Core Analysis Protocol TOC{depth "2"} Introduction This analysis enables researchers to identify and compare surface changes (deformations and ...

Medial Distance This class computes the distance between the vertices of a shape, defined as a contours, and the centers of mass. Project Components Medial Distance ...

Medial Distance TOC{depth "2"} Version 1.0 Overview Various data analysis protocols use nonportable software to accomplish the computation described below. The details ...

float squareCoord {{1, 1, 1, 1},{1, 1, 1, 1},{0, 0, 0, 0}}; float distance DistanceFunction.calculateMedialDistance( squareCoord, DistanceFunction.EUCLIDEAN DISTANCE ...

Ovreview This programming guide shows how to write Java classes that uses !ShapeTools library to calculate distance between the vertices of a shape, defined as a ...

Discussed Fly wing 20,000 wings processed The Pipeline (Cluster ?) file I/O is too slow, so Ryan did them on his standalone machine. Ucf reader/writers now support ...

Previous week Agenda and Notes for 23 February 2009 Shape Tools meeting Issues, status How to respond to ADNI Pipeline work assignments !BaeCheol will add to !ShapeReporter ...

Previous week (no notes taken) Agenda and Notes for 07 April 2009 Shape Tools meeting Issues, status To Do Next meeting Unscheduled

Previous week Agenda and Notes for 2 juune 2009 Shape Tools meeting Issues, Status requests for Tetrahedral solids may have not considered how to display in viewer ...

Previous week (no notes taken) Next meeting

Previous week Agenda and Notes for 5 May 2009 Shape Tools meeting Issues, status To Do Next meeting CS evaluate "tetrahedron" file format requested by ivo CS write ...

Previous week Agenda and Notes for 07 April 2009 Shape Tools meeting Issues, status CS fixed bugs in viewer, added minimal edge support for DX files w/o faces, added ...

Previous week Agenda and Notes for 9 June 2009 Shape Tools meeting Issues, Status Discussed Shape tools bulletin, suggestion of archiving bulletins,and simple email ...

Previous week Agenda and Notes for 10 February 2009 Shape Tools meeting Issues, status ShapeViewer v1.1.11 beta sent to Roger, !BaeCheol, Ryan !TopoMender status ...

Discussed Jack !VanHorn is using !ShapeViwer to view DFS1 files ADNI shape statistics pipeline asked for changes in pipeline functionality (specifcally, something ...

Previous week no meeting today Next Week

Previous week no notes taken Agenda and Notes for 17 March 2009 Shape Tools meeting Issues, status To Do Next meeting Unscheduled

Previous week Agenda and Notes for 18 Nov 2008 Shape Tools meeting prev. weeks to do Fly Wing modifications to use warp tools JNI bridge to shape tools Shape Density ...

Previous week (no notes taken) Agenda and Notes for 21 April 2009 Shape Tools meeting Issues, status To Do Next meeting Unscheduled

Previous week Agenda and Notes for 24 June 2009 Shape Tools meeting Issues, Status Next Week To Do

Previous week no notes taken Agenda and Notes for 24 March 2009 Shape Tools meeting Issues, status To Do Next meeting Unscheduled

Previous week Agenda and Notes for 27 January 2009 Shape Tools meeting Issues, status ShapeViewer v1.1.11 beta sent to Roger, !BaeCheol, Ryan !TopoMender status ...

Previous week Agenda and Notes for 28 April 2009 Shape Tools meeting Issues, status P41 Site visit is May 27, 2009 Change syntax of ImageVoxelMap upper/lower bounds ...

Previous week no notes taken Agenda and Notes for 31 March 2009 Shape Tools meeting Issues, status To Do Next meeting Unscheduled

CCB Shape Program Portable Geometry Tools Shape Tools Program mission : Provide the !NeuroImaging community with tools which support the modelling, analysis and display ...

RACI chart Mesh Triangulation EDITTABLE{ } Activity Start Wk End Wk ExpEnd Wk BC CS RW ExpHrs ActHrs !ExpHr Write overview requirement 35 35 35 RA AI 3 3 0 Do research ...

Triangle mesh representations: Parenthesized numbers (e.g (4)) following an operation indicate the number of requests for that operation. Easy Operations: Global ...

!ShapeTools Plugin project definition Public web page of !ShapeToolsPluginLibrary TOC{depth "2"} Overview This project aims to add the expertise to use a plugin framework ...

Shape Tools Glossary $ Shape : a collection of sets of points, edges, faces , solids and data attributes. $ Point : a point in an N-dimensional space, generally represented ...

direct distribution list of shape tools Craig Schwartz craig@loni.ucla.edu BaeCheol Shin bcshin@loni.ucla.edu Roger Woods rwoods@ucla.edu Ryan Cabeen rcabeen@loni ...

Shortest Path ( v1x0 ) TOC{depth "2"} Overview The problem of finding the shortest path in a surface mesh from one vertex to another. "Shortest path" may be least ...

Dijkstra's algorithm is a greedy algorithm that solves the single-source shortest path problem for a directed graph with nonnegative edge weights. The shortest path ...

Ovreview This programming guide shows how to write Java classes that uses !ShapeTools library to find shortest distance and its path. usage Step 1. import import ...

The java application libraries with which !ShapeTools applications are built. If you are a Java developer, you want these. If you don't know which libraries to use ...

These applications and libraries use the ShapeTools Java software libraries. A Suite is a collection of libraries and applications that focus on a specific area WarpTools ...

!ShapeTools Plugin project definition Public web page of !ShapeToolsPluginLibrary TOC{depth "2"} Overview The !SurfStats matlab package, disributed by Dr. Keith Worsley ...

RACI Chart RACI chart for TinyShapeViewer EDITTABLE{ } Activity Start Wk End Wk ExpEnd Wk CS SN CJ ExpHrs ActHrs curr!ExpHr Write overview requirement 45 45 45 RA ...

Translations This topic describes tools that allow a Shape to be written as a particular file format. Each format typically requires specific attributes of a Shape ...

Using !ShapeTools !ShapeTools ShapeTools is a Java library that simplifies the tasks of writing application programs that manipulate geometrical Shapes. Using !ShapeTools ...

Using PLY file with !ShapeTools files written by !ShapeTools will name the face vertex index property "vertex index" does not yet support per vertex attributes does ...

ShapeTransform Neurological image volumes are routinely mapped from one coordinate space into another. It is often necessary to apply this mapping to shapes (anatomical ...

ShapeTransform Bug List (none reported thus far) Revised: 22 Nov 2006

ShapeTransform Change Log Revised: 15 August 2007 TOC{depth "2"} Version 1.1.0 Now supports shape tools "ascii" matrix transform file format. Uses standard !ShapeTools ...

Shape Transform Frequently Asked Questions TOC{depth "2"} What is the Ascii transform matrix format ? An ascii transform matrix consists of exactly four lines of ...

ShapeTransform Feature Wish List $ Feature: A short (1 or 2 words) name for the feature. $ Description: A longer description of the feature. $ Version: The version ...

ShapeTransform Project Management Stakeholders TABLE{ sort "on" tableborder "1" cellpadding "1" cellspacing "2" headerbg "#DFE5E9" headercolor "#99000F" databg " ...

Shape Transform Requirements The !ShapeTransform tool will be run via command line arguments, exclusively apply a linear coordinate transformation to the coordinates ...

current version not available

Shape Translator Documentation ShapeTools Applications TOC Overview This package contains a tool to losslessly convert between a variety of mesh formats that are ...

ShapeViewer ( version 1.1.12) TOC{depth "3"} A simple 3-D viewer that displays Shape files read by the Loni ShapeTools library. Supported file formats include: LONI ...

Last Upate : 11 May 2005 Shape Viewer Bugs Status Description Notes Reported fix error on "-directory" Loading stalls if buggy ucf is encountered 11 May trap printing ...

Shape Viewer v 1.1 Bugs Version: 16 August 2005 Craig 1) Program is very slow starting up on a Macintosh Startup on Craig's Powerbook G4 (533mhz) is about 14 seconds ...

ShapeViewer Change Log Date Version Change 31 May 05 1.1 !DrawMode Surface Fill now supported. The "Reverse Normals" button was added to the control Pane. 31 May ...

Command line arguments to !ShapeViewer TABLE{ sort "on" tableborder "1" cellpadding "1" cellspacing "2" headerbg "#DFE5E9" headercolor "#990000" databg "#CCCCCC, ...

ShapeViewer client commands The !ShapeViewer may be controlled by text commands (entered into it's !BeanShell terminal window). The set of defined commands, and their ...

Shape Viewer External Interface The !ShapeViewer supports an interface that enables it to be used as a graphics display system by an application program able to use ...

Shape Viewer Frequently Asked Questions TOC{depth "2"} I get this error: !ShapeViewer requires java3d 1.3 or greater. The problem is that the !ShapeViewer cannot ...

Next Version Feature Wish List Shape Viewer version 2 Revised: 18 May 2005 support copy/past into dialog boxes on Linux, Mac OS support pauls' "diamond" ucf format ...

Feature Wish List for CCB !ShapeViewer program $ Feature: A short (1 or 2 words) name for the feature. $ Description: A longer description of the feature. $ Version ...

CCB Shape Viewer Alpha test feedback Download Use on LONI by: !ShapeViewer Please test these features: Open a UCF Open a group of ucf's stored in text file Save ...

Shape Viewer Glossary Ucf: Shape: Java3D: Java: Point: Line: Surface: Start/Stop Vertices: List file: Grid Dimension Rule: Scene: URL:

ShapeViewer Help File menu items read shapes from local computer files or from remote files. Load Shape Replaces the current display with shapes read from a file on ...

New Features in !ShapeViewer v. 1.1 $ Perspective : View Menu Toggles the display perspective to ?? $ Scene Orientation : View Menu Sets the scene orientation (rotation ...

!ShapeViewer Plug-in Guide Revised 8 September 2009 The LONI !ShapeViewer, version 2.0, may now be extended using dynamically loaded plug-in modules. This guide describes ...

!ShapeViewer v1.4 Project Management Add capacity to display information about a user selected vertex TOC{depth "3"} People Affected TABLE{ sort "on" tableborder ...

!ShapeViewer v1.5 Project Management TOC{depth "2"} Stakeholders TABLE{ sort "on" tableborder "1" cellpadding "1" cellspacing "2" headerbg "#DFE5E9" headercolor ...

Requirements !ShapeViewer v1.10 draft Save view as jpg version : command line option prints !ShapeViewer version string and exits (displays no Gui) Expose all inner ...

Shape Viewer Requirements: 05 Apr 2005 General Written in Java Uses Shape Tools library to read data files and obtain vertex data. Assumes Java3D 1.3.0 or greater ...

Shape Viewer Requirements: 30 Mar 2005 General Written in Java Uses Shape Tools library to read data files and obtain vertex data. Assumes Java3D 1.3.0 or greater ...

Requirements: Shape Viewer v. 1.1 All Version v 1.0 requirements Read and Display Minc OBJ format surfaces Optionally color vertices, edges and faces according to ...

A simple list of requrirements for version 1.2 Client/Server A !ShapeViewer may broadcast to any number of other, slaved, viewers it's current state. The other viewers ...

Using ShapeViewer Scene files TOC{depth "2"} About ShapeViewer Scene Files ShapeViewer scene files make it possible to save and restore a collection of files, as ...

ShapeViewer Test Plans Status one of "blank, Pass, Fail", with initials of tester appended in parentheses. Example: SGI Status of command line file: FAIL: (cs) Test ...

Shape Viewer test plan v. 1.1.0 Notes on editing the tables Craig Table column delimiters " " must have at least 1 character between them to display correctly. ...

Shape Viewer User Manual (Outline) Purpose Requirements Java 1.4.1 or greater installed on machine. Java3D 1.3.0 or greater already installed on machine. Supported ...

Review of Shape Viewer v. 1.1.0 development cycle What Worked: What did not work: Lessons Learned

Shape Viewer v. 1.0 Requirements Viewer Requirements 30 March 2005 Viewer Requirements 06 March 2005 Documentation Glossary User Manual Requirements Feature list ...

LONI SHAPEVIEWER (version 1.1.12) TOC{depth "2"} #TocAnchor #OverviewAnchor OVERVIEW Neuroimaging Researchers often need to see geometrical shapes relevant to their ...

JenniferTom 23 Mar 2006 Shimming The process of improving field homogeniety by compensating for imbalances in the main magnetic field of an MRI system. This can ...

/ COPYRIGHT NOTICE Copyright (c) Craig Schwartz and Arthur W. Toga See README.license for license notices. / package examples; import edu.ucla.loni.ccb.shape.About ...

SierpinskiOctahedron describes classes neeed to implement an octahedron whose faces are triangulated with Sierpinski triangles. Class package edu.ucla.loni.ccb.shape ...

For the SIFTI Web site "AIR" section ... Nonlinear Transforms in !AIR AIR uses polynomials of order 1 through 12 as the basis functions for it's nonlinear image warping ...

CCB Special Interest Group on Automated Pipeline Workflows for Neuroimaging Data Analysis SIG Home CCB SIG Meeting Calendar CCB SIGFlow site Inside CCB (password ...

CCB SIG-FLOW Progress and Workflow Status 06/30/09 SIG-FLOW Main Page SIG Home CCB SIG Meeting Calendar CCB SIGFlow site Inside CCB (password protected) LONI Pipeline ...

CCB SIG-FLOW Progress and Workflow Status 07/07/09 SIG-FLOW Main Page SIG Home CCB SIG Meeting Calendar CCB SIGFlow site Inside CCB (password protected) LONI Pipeline ...

CCB SIG-FLOW Progress and Workflow Status 07/09/09 SIG-FLOW Main Page SIG Home CCB SIG Meeting Calendar CCB SIGFlow site Inside CCB (password protected) LONI Pipeline ...

CCB SIG-FLOW Progress and Workflow Status 07/14/09 SIG-FLOW Main Page SIG Home CCB SIG Meeting Calendar CCB SIGFlow site Inside CCB (password protected) LONI Pipeline ...

CCB SIG-FLOW Progress and Workflow Status 07/16/09 SIG-FLOW Main Page SIG Home CCB SIG Meeting Calendar CCB SIGFlow site Inside CCB (password protected) LONI Pipeline ...

CCB SIG-FLOW Progress and Workflow Status 07/21/09 SIG-FLOW Main Page SIG Home CCB SIG Meeting Calendar CCB SIGFlow site Inside CCB (password protected) LONI Pipeline ...

CCB SIG-FLOW Progress and Workflow Status 07/23/09 SIG-FLOW Main Page SIG Home CCB SIG Meeting Calendar CCB SIGFlow site Inside CCB (password protected) LONI Pipeline ...

CCB SIG-FLOW Progress and Workflow Status 07/28/09 SIG-FLOW Main Page SIG Home CCB SIG Meeting Calendar CCB SIGFlow site Inside CCB (password protected) LONI Pipeline ...

CCB SIG-FLOW Progress and Workflow Status 07/30/09 SIG-FLOW Main Page SIG Home CCB SIG Meeting Calendar CCB SIGFlow site Inside CCB (password protected) LONI Pipeline ...

CCB SIG-FLOW Progress and Workflow Status 08/06/09 SIG-FLOW Main Page SIG Home CCB SIG Meeting Calendar CCB SIGFlow site Inside CCB (password protected) LONI Pipeline ...

CCB SIG-FLOW Progress and Workflow Status 08/11/09 SIG-FLOW Main Page SIG Home CCB SIG Meeting Calendar CCB SIGFlow site Inside CCB (password protected) LONI Pipeline ...

CCB SIG-FLOW Progress and Workflow Status 08/18/09 SIG-FLOW Main Page SIG Home CCB SIG Meeting Calendar CCB SIGFlow site Inside CCB (password protected) LONI Pipeline ...

CCB SIG-FLOW Progress and Workflow Status 08/20/09 SIG-FLOW Main Page SIG Home CCB SIG Meeting Calendar CCB SIGFlow site Inside CCB (password protected) LONI Pipeline ...

CCB SIG-FLOW Progress and Workflow Status 08/25/09 SIG-FLOW Main Page SIG Home CCB SIG Meeting Calendar CCB SIGFlow site Inside CCB (password protected) LONI Pipeline ...

CCB SIG-FLOW Progress and Workflow Status 08/27/09 SIG-FLOW Main Page SIG Home CCB SIG Meeting Calendar CCB SIGFlow site Inside CCB (password protected) LONI Pipeline ...

CCB SIG-FLOW Progress and Workflow Status 09/10/09 SIG-FLOW Main Page SIG Home CCB SIG Meeting Calendar CCB SIGFlow site Inside CCB (password protected) LONI Pipeline ...

CCB SIG-FLOW Progress and Workflow Status 09/15/09 SIG-FLOW Main Page SIG Home CCB SIG Meeting Calendar CCB SIGFlow site Inside CCB (password protected) LONI Pipeline ...

CCB SIG-FLOW Progress and Workflow Status 09/17/09 SIG-FLOW Main Page SIG Home CCB SIG Meeting Calendar CCB SIGFlow site Inside CCB (password protected) LONI Pipeline ...

CCB SIG-FLOW Progress and Workflow Status TBD!!! 09/22/09 SIG-FLOW Main Page SIG Home CCB SIG Meeting Calendar CCB SIGFlow site Inside CCB (password protected) ...

CCB SIG-FLOW Progress and Workflow Status 09/24/09 SIG-FLOW Main Page SIG Home CCB SIG Meeting Calendar CCB SIGFlow site Inside CCB (password protected) LONI Pipeline ...

CCB SIG-FLOW Progress and Workflow Status 09/29/09 SIG-FLOW Main Page SIG Home CCB SIG Meeting Calendar CCB SIGFlow site Inside CCB (password protected) LONI Pipeline ...

CCB SIG-FLOW Progress and Workflow Status 10/01/09 SIG-FLOW Main Page SIG Home CCB SIG Meeting Calendar CCB SIGFlow site Inside CCB (password protected) LONI Pipeline ...

CCB SIG-FLOW Progress and Workflow Status 10/06/09 SIG-FLOW Main Page SIG Home CCB SIG Meeting Calendar CCB SIGFlow site Inside CCB (password protected) LONI Pipeline ...

CCB SIG-FLOW Progress and Workflow Status 10/08-13/09 SIG-FLOW Main Page SIG Home CCB SIG Meeting Calendar CCB SIGFlow site Inside CCB (password protected) LONI ...

CCB SIG-FLOW Progress and Workflow Status 10/15/09 SIG-FLOW Main Page SIG Home CCB SIG Meeting Calendar CCB SIGFlow site Inside CCB (password protected) LONI Pipeline ...

CCB SIG-FLOW Progress and Workflow Status 10/20/09 SIG-FLOW Main Page SIG Home CCB SIG Meeting Calendar CCB SIGFlow site Inside CCB (password protected) LONI Pipeline ...

CCB SIG-FLOW Progress and Workflow Status 10/22/09 SIG-FLOW Main Page SIG Home CCB SIG Meeting Calendar CCB SIGFlow site Inside CCB (password protected) LONI Pipeline ...

CCB SIG-FLOW Progress and Workflow Status 10/27/09 SIG-FLOW Main Page SIG Home CCB SIG Meeting Calendar CCB SIGFlow site Inside CCB (password protected) LONI Pipeline ...

IvoDinov^? 29 Oct 2009 CCB SIG-FLOW Progress and Workflow Status 10/29/09 SIG-FLOW Main Page SIG Home CCB SIG Meeting Calendar CCB SIGFlow site Inside CCB (password ...

CCB SIG-FLOW Progress and Workflow Status 11/03/09 SIG-FLOW Main Page SIG Home CCB SIG Meeting Calendar CCB SIGFlow site Inside CCB (password protected) LONI Pipeline ...

CCB SIG-FLOW Progress and Workflow Status 11/05/09 SIG-FLOW Main Page SIG Home CCB SIG Meeting Calendar CCB SIGFlow site Inside CCB (password protected) LONI Pipeline ...

CCB SIG-FLOW Progress and Workflow Status 11/10/09 SIG-FLOW Main Page SIG Home CCB SIG Meeting Calendar CCB SIGFlow site Inside CCB (password protected) LONI Pipeline ...

CCB SIG-FLOW Progress and Workflow Status 11/12/09 SIG-FLOW Main Page SIG Home CCB SIG Meeting Calendar CCB SIGFlow site Inside CCB (password protected) LONI Pipeline ...

CCB SIG-FLOW Progress and Workflow Status 11/17/09 SIG-FLOW Main Page SIG Home CCB SIG Meeting Calendar CCB SIGFlow site Inside CCB (password protected) LONI Pipeline ...

CCB SIG-FLOW Progress and Workflow Status 11/19/09 SIG-FLOW Main Page SIG Home CCB SIG Meeting Calendar CCB SIGFlow site Inside CCB (password protected) LONI Pipeline ...

CCB SIG-FLOW Progress and Workflow Status 11/24/09 SIG-FLOW Main Page SIG Home CCB SIG Meeting Calendar CCB SIGFlow site Inside CCB (password protected) LONI Pipeline ...

CCB SIG-FLOW Progress and Workflow Status 12/01/09 SIG-FLOW Main Page SIG Home CCB SIG Meeting Calendar CCB SIGFlow site Inside CCB (password protected) LONI Pipeline ...

BorisGutman 03 Nov 2008 This program creates a surface of spherical topology from a signed distance field following Xiao Han's paper: http://citeseerx.ist.psu.edu ...

SimpleShapeViewer A Java class that provides a simple means for !ShapeTools developers to display a Shape. Note: The complete ShapeViewer may be launched from a Java ...

Back Online CCB Calendar CCB Meetings CCB AHM Skull-Stripping MR Brain Images Using a Model-Based Level Set (MLS) Audrey H. Zhuang Audrey H. Zhuang, Daniel J. Valentino ...

craigs n otes

Project Name Interface Definition Software Architect Name of interface template creator Project Lead Name of person leading the project Project Sponsor Sponsor name ...

Shape Tools (Contour and Surface) Requirements and Functionality (draft 1) Needed Functionality: Easy iteration over a shape (a surface or contour or ???) Easy to ...

CCB Shape Tools library function list Version: March 2005 Notes: I don't think we need to represent Contours and Surfaces with different classes; The only significant ...

Applications: twiki prints version in table pipeline prints pipeline descritor version prints version number help prints simple help reference If an application ...

Project Name Software Architect Name of template creator Project Lead Name of person leading the project Project Sponsor Sponsor's name Here Date of Last Revision ...

/ COPYRIGHT NOTICE Copyright (c) 2004 Elaine J. Vickers and Arthur W. Toga See README.license for license notices. / package edu.ucla.loni.example; import edu.ucla ...

CCB !ShapeTools program Java Coding Style Conventions Revision: 18 April 2006 Some notes on Useful Comments Software Style Example File Layout 1. Copyright notice ...

LONI Anatomist Orthogonal view of the Jacopo Atlas in the LONI Anatomist:

CCB LONI Navigator: Mesh Editing Application Navigator Program mission : Provide an integrated visualization tool to display multi-modality neurological information ...

LONI Pipeline Download Pipeline

JenniferTom 23 Mar 2006 For more information visit: Nuclear Spin and Behavior in Magnetic Fields

Sulcal Variability Analysis Overview This project computes the variability of a collection of curves. These curves must be LONI UCFs and may have an arbitrary number ...

No permission to read topic CCB.Sulcalseg perhaps you need to log in?

Back Online CCB Calendar CCB Meetings CCB AHM Summary of Select Presentations A Flexible Tool for Automated Cortical Sulci Extraction Songfeng Zheng and Zhuowen Tu ...

JenniferTom 22 Mar 2006 Toward the top of the head. Same as dorsal.

JenniferTom 24 Mar 2006 The superior frontal gyrus is located in the frontal lobe of the brain. Location of Superior Frontal Gyrus: Image was released into public ...

JenniferTom 24 Mar 2006 In temporal lobe. Contains (Primary Auditory Cortex) and Wernickes Area. Location of Superior Temporal Gyrus: Image was released into public ...

JenniferTom 24 Mar 2006 The supplementary motor area is located in the frontal lobe. It has strong connections with the ganglia.

JenniferTom 24 Mar 2006 The supplementary motor area is located in the lobe. It recieves projections from the putamen.

Projects using the CCB !ShapeTools library and applications Title Description Uses Contact HAAS Data Analysis Explores Hippocampus Morphology in AD, !VaD and non ...

Surface to Contour This application converts a closed surface mesh into a set of contours. It reads a surface mesh from a file, and writes a contour output. Usage ...

Surface Analysis Protocol Overview This page documents the steps necessary for cortical surface-based analysis of a collection of structural MR images. The first ...

TOC{} Surface Extraction Protocol step definiition (draft 17 Nov 2008) EDITTABLE{ } Step Description Program Inputfmt OutputFmt Notes 1. File translation Analyze ...

Documents the directory structure expected by selected !FreeSurfer programs TOC{depth "3"} directory structure required by mris make surfaces Summary Directory Structure ...

No permission to read topic CCB.SurfaceExtractionMeeting02Oct2008 perhaps you need to log in?

No permission to read topic CCB.SurfaceExtractionMeeting03Dec2008 perhaps you need to log in?

No permission to read topic CCB.SurfaceExtractionMeeting04Feb2009 perhaps you need to log in?

No permission to read topic CCB.SurfaceExtractionMeeting04Mar2009 perhaps you need to log in?

No permission to read topic CCB.SurfaceExtractionMeeting07Jan2009 perhaps you need to log in?

No permission to read topic CCB.SurfaceExtractionMeeting10Dec2008 perhaps you need to log in?

No permission to read topic CCB.SurfaceExtractionMeeting11Mar2009 perhaps you need to log in?

No permission to read topic CCB.SurfaceExtractionMeeting12Nov2008 perhaps you need to log in?

No permission to read topic CCB.SurfaceExtractionMeeting14Oct2008 perhaps you need to log in?

No permission to read topic CCB.SurfaceExtractionMeeting16Apr2008 perhaps you need to log in?

No permission to read topic CCB.SurfaceExtractionMeeting17Dec2008 perhaps you need to log in?

No permission to read topic CCB.SurfaceExtractionMeeting18Feb2009 perhaps you need to log in?

No permission to read topic CCB.SurfaceExtractionMeeting18Mar2009 perhaps you need to log in?

No permission to read topic CCB.SurfaceExtractionMeeting19Nov2008 perhaps you need to log in?

No permission to read topic CCB.SurfaceExtractionMeeting21Jan2009 perhaps you need to log in?

No permission to read topic CCB.SurfaceExtractionMeeting23Oct2008 perhaps you need to log in?

No permission to read topic CCB.SurfaceExtractionMeeting25Feb2009 perhaps you need to log in?

No permission to read topic CCB.SurfaceExtractionMeeting25Mar2009 perhaps you need to log in?

No permission to read topic CCB.SurfaceExtractionMeeting26Nov2008 perhaps you need to log in?