ShapeTools Ucf Programmer's Guide This guide is an introduction to how the CCB !ShapeTools library may be used to read, alter and write write Laboratory of Neuro ...

/ COPYRIGHT NOTICE Copyright (c) Craig Schwartz and Arthur W. Toga See README.license for license notices. / package examples; import java.io.IOException; import ...

CCB !UcfReorder Project The human Hippocampus is frequently represeted as a set of contours drawn in parallel planes that intersect the Hippocampus. Analyses of these ...

UcfReorder Command Line Summary Usage: java jar program.jar options template.ucf output.ucf Version: v1.0 UcfReorder Usage help Prints help and usage information ...

!UcfReorder Examples TOC{depth "2"} Make all contours rotate clockwise force all contours of a UCF file named 'in.ucf' to a clockwise rotation, use the following ...

!UcfReorder Project Definition TOC{depth "2"} Restrictions, Exclusions, Limitations If a ucf level contains more than one 'loop' (contour) in a level, only the first ...

RACI Chart EDITTABLE{ } Activity Start Wk End Wk ExpEnd Wk CS KN CH CK RW EstHrs ActHrs !ExpHr Requirements 34 34 34 R A I A I 1 1 1 Write Program 35 36 35 R I 13 ...

!UcfReorder User Guide TOC{depth "2"} Synopsis !UcfReorder will perform several useful re-orderings of the vertices of a LONI Ucf file. Command Line Usage !UcfReorder ...

Project Ucf Volume Mask Representing a brain volume mask as a series of parallel contours (UCF) Purpose : To explore the feasibility of a fast and reliable parametric ...

UIF Reader TOC{depth "2"} Version version 1.0 Overview One of the older image formats used by LONI, the UIF family of image types, is not supported by the current ...

Questions and Answers $ Set location of !ShapeTools library : Set the location of the jar file by hand in the file rshape/R/zzz.R before installing.

CCB !ShapeTools program Useful Comments Class Comments Should generally describe what is to be found in the class. Example Original Code / Verify that input arguments ...

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Using !ConvexHull Overview !ConvexHull is a program that computes the surface of the convex hull of a shape. The convex hull is defined as the minimal convex set ...

CCB DX Java Library User's Guide The !DXJava library provides low-level read and write capabilities to java applications that wish to manipulate !OpenDX data files ...

Using !DuffOffTranslator Overview !DuffOffTranslator is a program that translates between Duff and Off surface formats, retaining metadata that is equivalent between ...

Extract4DUcfAttributes Usage Guide Synopsis !Extract4DUcfAttributes is an application program that extracts the data attributes of a Ucf file and, optionally, saves ...

Using !ImageToShape Overview !ImageToShape is an application that creates a shape file that encodes the intensity data of a volume in a planar slice. This is meant ...

Using !InterpolateContour !InterpolateContour is a command line program that interpolates the contour vertices and data attributes in a Ucf, or Minc Contour object ...

Using !MedialDistance Overview !MedialDistance computes and stores the distance between the vertices of a shape, defined as a group of contours, and a polygon passing ...

Using !RigidQuaternionTransform Overview !RigidQuaternionTransform estimates the rigid transformation that best aligns two sets of homologous points using the Dual ...

Overview The curvature of a surface is a property of interest to neurological researchers. The !ShapeCurvature program reads a surface mesh from a data file and computes ...

!ShapeDistance Usage Guide TOC{depth "2"} A program to calculate the distance between homologous vertices in a pair of !Shapes. This program computes the distance ...

Using !ShapeToObj Overview !ShapeToObj converts an arbitrary !ShapeTools-compatible surface file to a Minc Obj polygon file. Since not all shapes have an equivalent ...

Using Shape Tools applications with the LONI Pipeline Table of Contents TOC{depth "2"} Overview The LONI Pipeline (http://pipeline.loni.ucla.edu) workflow execution ...

Using Shape Transform Table of Contents TOC{depth "2"} Overview ShapeTransform reads a homogenous coordinate transform matrix from an AIR Linear transformation file ...

Using !UcfReorder Overview !UcfReorder will perform several useful re-orderings of the vertices of a LONI Ucf file. Usage Summary To run this program, you must have ...

CCB Virtual File System Browser The Virtual File System Browser (!VFSBrowser) library provides read and write access to remote computer file system via an interface ...