Agenda and Notes for 09 Sep. 2008 Shape Tools meeting

prev. weeks to do

CS - ImageCoordinateTools tools code review.
CS - ContourMatching code review .
CS - prototype C / Java interface for ShapeToolsIO readers
CS - private distribution of modified ShapeViewer, for user testing.
CS - find definition of BrainVisa ribbon format, report to Ivo on feasibility of reading and using this file format
CS - update, review and send to Shantanu a copy of InterpolateContour.
CS - plugin development (if there is time)
CS - modify SurfStat readers to determine if the ShapeTools jar files are present and use them if they are, otherwise dont'.
CS - compile ShapeToObj with new BrainVisa mesh readers, test on David Shattuck's BSE surface.
RC - Complete ContourMatch code and notify Craig of it's whereabouts.
RC - Write ContourMatch tool documentation
RC - modify warp and other pipelines to use ContourMatch.
RC - edit project definition of tool to measure avg. distance from a vertex to it's neighbors
RC - begin work on shape coordinate density tools
RC - get computer from Rico, with support as needed, from Craig.
BC - complete file transfer from old computer to new computer.
BC - revise ImageCoordinateTools to use the FunctionLibrary
BC - fix ShapeReporter bugs
BC - complete adding batch mode to InterpolateContour
BC - add batch mode to ShapeReporter
BC - Document ImageCoordinateTools
BC - evaluate best way to implement solutions to Shantanu's dyanmic programming problem.

direction of CCB renewal efforts - still no clear ; activity expected next week.
status of work in progress
P41 site visit may be coming up;
extending contour match tools to be useful for general curve analysis.
/ifs/tmp now moved to /ifs/tmp2decision

Complete the Port of Shantanu's code.
Add ShapeTools capbilities to SurfStats.
Add plugin capabilities to our software.
add BrainVisa mesh file format reader and writer
Create tool(s) to measure surface uniformity.
Create a protocol to automate generation BSE of cortical surfaces (as a pipeline).
Update computer equipment.
ImageCoordinateTools
JNI Bridge to to ShapeToolsIO

CS - get status update of software download packages.
CS - (with BC) review ColorSurface. If needed, add capability to set output attribute to raw scalar voxel value.
CS - get BC's internet connection wokring
CS - get BC's printer working.
CS - notify Shantanu of software to calc. std. dev. for a population of shapes.
CS - prototype C / Java interface for ShapeToolsIO readers
CS - find definition of BrainVisa ribbon format, report to Ivo on feasibility of reading and using this file format
CS - plugin development (if there is time)
CS - modify SurfStat readers to determine if the ShapeTools jar files are present and use them if they are, otherwise dont'.
RC - test BrainVisa sample surfaces for compatibility with Boris's resampler.
RC - update ContourMatch code per code review feedback.
RC - Write ContourMatch tool documentation
RC - translate dynamic progamming code into java, for ContourMatch
RC - modify warp and other pipelines to use ContourMatch.
RC - get computer from Rico, with support as needed, from Craig(either Mac, or update: video card, ram, extra disk drive).
BC - complete adding batch mode to InterpolateContour
BC - add batch mode to ShapeReporter
BC - Document ImageCoordinateTools
BC - work with Shantanu to make use of ColorSurface tools
BC - evaluate ability to replicate warp surface coloring program with ColorSurface
BC - return old computer to Rico.

CS, RC - write paper comparing steps of warp protocol with paul's protocol
CS write BrainVisa mesh ShapeToolsIO writer.
CS - Revise AttributeSet in shape tools core for safe concurrent access
CS - Integrate & release ColorSurface tool
CS - shape io gzip reader bug fix.
CS, RC - complete handout matching current warp protocol applications with older protocol applications.
BC - add a table edit mode to the color map control point dialog (shows control point values in editable spreadsheet).
RC - software download descriptions MultiGridPDE libary (do after Aug 14 meeting)
RC - port Shantanu's dynamic solver code to Java
N/A - RGB to LAB color model interconversion. tool
N/A - create C/Java ShapeIO interface (eval. Swig, JNI for this purpose)
N/A - software download descriptions MultiGridPDE libary (do after Aug 14 meeting)
N/A - software to convolve an image with a shape.

Key: * = schedule work, completed. 0 = schedule work, uncompleted, [ ] - incomplete, unplanned, extra work, [X] = completed unplanned extra work.