Skip to content.
CCB > CCB_NCBC_Resources > NCBC_ToolIntegration_XMLtology_2006

NCBC XMLtology for Tool Integration

Overarching Goals

The goals of this initiative is to generate an integrated pipeline of tools from all seven NCBCs.

Preliminaries

Specifications

Meetings (General NCBC SDIWG Meetings)

Centers, contacts and available tools NCBC Geo-Map NCBC centers NCBC Pipeline NCBC Pipeline NCBC Common DBP-related Research NCBC centers

NCBC Center SW Tools Page Contact Person Tool Description Status
CCB SW Tools IvoDinov IDA + Shape Modeling, Analysis and Viz tools Available
I2B2 SW Tools Henry Chueh (hcchueh@partners.org) & Shawn Murphy (snmurphy@partners.org), 617-726-3909 Genotype Analysis and DB TBD
SimBios SimBiome & SimTK JoyKu@stanford.edu, Jon Dugan dugan@biocontact.org LAPACK linear algebra library. Finite element method for nonlinear solid mechanics with discontinuous Galerkin (viscous warping) TBD
NA-MIC SW Tools Will Schroeder Image Seg/Reg tools Available
NCBO SW Tools Daniel Rubin (650) 725-5693 rubin@smi.stanford.edu ontology editing and annotation tools TBD
NCIBI SW Tools Terry E. Weymouth weymouth@umich.edu 734 355-6802 & H.V. Jagadish Timber/MiMI XML databases. Oncomine analysis of tumor gene expression maps TBD
MAGNet (C2B2) SW Tools [[][Aris Floratos]] (212) 851-5139 af2202@columbia.edu geWorkbench tools (e.g., molecular classification of brain tumors) TBD