| Name | Description | Reader | Writer | Library Class | Notes |
| BrainVisa .mesh files | BrainVisa Mesh file surfaces | Yes | No | edu.ucla.loni.shapeio.brainvisa.BrainVisaIO | Writer not yet supported (coming soon!) |
| FreeSurfer binary triangle | FreeSurfer binary triangle surface format | Yes | No | | reader plugin only |
| CCBBM 1.0 | CCB BM surfaces | Yes | No | edu.ucla.loni.shapeio.ccbbm.ccbbmIO | |
| CCBBM 2.0 | CCB BM surfaces | Yes | No | edu.ucla.loni.shapeio.ccbbm.ccbbmIO | |
| DX | OpenDX general format data files | Yes | Yes | edu.ucla.loni.ccb.shapeio.dx.DxIO | supports "positions" + triangular "connections"; does not support "faces","loops","edges" model |
| Loni DFS 1.0 | LONI Duff DFS surface files | Yes | Yes | edu.ucla.loni.ccb.shapeio.duff.DuffIO | Version 1.0 of DFS file |
| Loni DFS 2.0 | LONI Duff DFS surface files | Yes | Yes | edu.ucla.loni.ccb.shapeio.duff.DuffIO | Version 2.0 of DFS file |
| Loni RGB UIF | Surfaces enocded in a color image file | Yes | No | edu.ucla.loni.ccb.shapeio.uif.UifIO | |
| Loni TM | LONI Triangle Model surface files | Yes | No | edu.ucla.loni.ccb.shapeio.tm.TmIO | |
| Loni UCF | LONI Universal Contour Files | Yes | Yes | edu.ucla.loni.ccb.shapeio.ucf.UcfIO | |
| Minc Ascii Obj | Minc OBJ ascii format surface mesh files | Yes | Yes | edu.ucla.loni.ccb.shapeio.minc.MincIO | |
| Minc Binary Obj | Minc OBJ binary format surface mesh files | Yes | Yes | edu.ucla.loni.ccb.shapeio.minc.MincIO | MincPolygonObjFileFormatDescription |
| Minc Line Obj | Minc lines ascii format | Yes | Yes | edu.ucla.loni.ccb.shapeio.minc.MincIO | MincLineObjFileFormatDefinition |
| OFF | GeomView OFF files | Yes | No | edu.ucla.loni.ccb.shapeio.off.OffIO | per vertex textures not supported |
| VTK | VTK Unstructured Grid surfaces (only) | Yes | Yes | edu.ucla.loni.ccb.shapeio.vtk.VtkIO | supports only triangular meshes |
| VTK | VTK POLYDATA surfaces | Yes | No | edu.ucla.loni.ccb.shapeio.vtk.VtkIO | (limited support for POINTS_DATA components) |