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FileFormats
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---++ File Formats The following file formats are currently supported by MBAT. * *Image volume files* * Analyze(tm) (*.img, *.hdr): http://www.mayo.edu/bir/PDF/ANALYZE75.pdf <br/> Nifti header files are supported.<br/> SHIVA can also read GZIP compressed image files (*.img.gz).<br/> Big volume is supported for uncompressed image files with byte, short, and rgb formats only.<br/> Currently, SHIVA supports the following file types: * binary (1-bit, converted to byte format internally) * byte (8-bit) * short (16-bit, signed/unsigned) * rgb (24-bit) * float (32-bit, converted to short format internally) * Nifti (*.nii): http://nifti.nimh.nih.gov/nifti-1/ <br/> SHIVA can only handle Nifti volumes with transformation matrix with scaling and shifting. Other transformations are treated as an identify matrix.<br/> SHIVA can also read GZIP compressed image files (*.nii.gz).<br/> * MINC (*.mnc): http://www.bic.mni.mcgill.ca/software/minc/prog_guide/ <br/> SHIVA can also read GZIP compressed MINC files (*.mnc.gz). Currently, SHIVA supports the following file types: * byte (8-bit) * short (16-bit) * rgb (24-bit)<br/> * Biorad PIC (*.pic): http://rsb.info.nih.gov/ij/plugins/biorad.html * [[http://www.loni.ucla.edu/twiki/bin/view/SHIVA/CIVMFormat][CIVM]] (*.headfile) <br/> Big volume is supported. * Bruker (reco, 2dseq): http://www.mrc-cbu.cam.ac.uk/Imaging/Common/brukerformat.shtml * TIFF with two variations * regular single layer. * ImageJ image stack (all frames are uncompressed). * *3D files* * Duff Surface (*.dfs) * Duff Curve (*.dfc) * [[http://www.loni.ucla.edu/twiki/bin/view/SHIVA/TMFormat][LONI Triangle Model]] (*.tm) * [[http://www.loni.ucla.edu/twiki/bin/view/SHIVA/UCFFormat][LONI UCF]] (*.ucf) * Object File Format (*.off): http://shape.cs.princeton.edu/benchmark/documentation/off_format.html * Geomview Manual: http://www.geomview.org/docs/html/geomview_toc.html#TOC40 * Binary Format (not supported by SHIVA): http://www.geomview.org/docs/html/geomview_33.html#SEC36 * MNI OBJ files (*.obj): http://www.bic.mni.mcgill.ca/~david/FAQ/FAQ.html * Surface format: http://www.bic.mni.mcgill.ca/~david/FAQ/polygons_format.txt * Curve format: http://www.bic.mni.mcgill.ca/~david/FAQ/lines_format.txt * 3D atlas (*.atlas3d) * *Label/BrainGraph files* * [[http://www.loni.ucla.edu/twiki/bin/view/SHIVA/LabelIndexFileFormat][Label index file]] (*.lbl, *.txt) * XML BrainGraph file (*.bgx) * GML BrainGraph file (*.gml) * Integrated Label File (*.ilf) * *Misc files* * Duff Keg (*.keg, *.atlas)
