The LONI Subversion repository location is svn+ssh://cvs.loni.ucla.edu/cvs/map . The following is the directory structure under trunk/ , which contains all the source codes, libraries, and build scripts.
| Directory | Description |
|---|
| /atlas/ | This directory contains some sample image volumes and BrainGraph files. |
| /doc/ | Some text documentations. |
| /lib/ | Shared binary libraries. |
| /resources/ | Resources for each build. |
| /resources/braingrapheditor/ | resources for BrainGraph Editor build. |
| /resources/kali/ | resources for Kali build. |
| /resources/mbat/ | resources for MBAT build. |
| /resources/shiva/ | resources for SHIVA build. |
| /src/ | Source code directory, which include not only Java source codes, but also various other resources, including build scripts. Its direct child directories are sources for different builds, core_src/ or plugin_src/. |
| /src/braingrapheditor_src/ | This directory contains the sources for the BrainGraph Editor workspace and its standalone build sources. |
| /src/core_src/ | This directory contains the core frame work. It is used by all other builds. |
| /src/kali_src/ | This directory contains the sources only needed by Kali build. Kali is aimed to be a compact of SHIVA with only limited features. |
| /src/mbat_src/ | This directory contains the sources only needed by MBAT build. |
| /src/plugins_src/ | This directory contains various plugins that are not needed by all the builds. |
| /src/plugins_src/bams_src/ | BAMS connection query. |
| /src/plugins_src/braingraph_src | This directory contains sources for BrainGraph internal structure, file IO filters, and GUI viewing components. |
| /src/plugins_src/ccdb_src/ | This directory contains clients for connecting to CCCDB services. |
| /src/plugins_src/curveeditor_src/ | A 2D image registration workspace using registered curves |
| /src/plugins_src/exedemo_src/ | An demo of how to write a SHIVA/MBAT plugin. |
| /src/plugins_src/expression_src/ | Gene Expression query plugin. |
| /src/plugins_src/flexdockmanager_src/ | Window manager using Flexdock docking framework. |
| /src/plugins_src/gemtool_src/ | An old plugin for SHIVA that uses Dr. David Shattuck's automatic registration executable. |
| /src/plugins_src/jidemanager_src/ | Window manager using JIDE docking framework. |
| /src/plugins_src/imagereg_src/ | This directory contains archaic image registration (point and curve) workspaces. |
| /src/plugins_src/imagestack_src/ | A plugin in the works for composing 2D images into a volume. |
| /src/plugins_src/latis_src/ | A plugin that retrieve remote images using LONI latis server. |
| /src/plugins_src/ntclient_src/ | This directory contains Heng's client implementation to NeuroTerrain server. |
| /src/plugins_src/popupmanager_src/ | Window manager using popups windows rather than docking. |
| /src/plugins_src/pubmedsearch_src/ | PubMed? query. |
| /src/plugins_src/registration_src/ | This directory contains Erh-Fang Lee's image registration workspaces. |
| /src/plugins_src/shivalauncher_src/ | A plugin for launching SHIVA by 3rd party programs (i.e. SmartAtlas?). |
| /src/plugins_src/smartatlaslauncher_src/ | A plugin for launching SmartAtlas? within SHIVA. |
| /src/shiva_src/ | This directory contains the sources needed to build SHIVA builds. Currently it also contains plugins needed by MBAT and Kali builds. Eventually many of these plugins would be moved to /src/plugin_src/. |
