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MouseBIRN > MouseBIRNWorkGroups > MouseBIRNAtlasing > MBATWorkPage > MBATMinutesAll

Minutes from All MBAT Programmer Meetings

Link to Mouse BIRN Programmers Working Page

General decisions:

  • 03/09/06: Decided that in general, people will work on modules for MBAT (that may be called by other applications as well) with many of them taking care of backend activities
  • 03/16/06: Bill and Steve will start work next week on integration of NT
  • 03/23/06: See http://gislounge.com/features/aa012402a.shtml for information about ArcIMS? web services
  • 03/23/06: Agreed that we need to share modules, potentially CVS or the wiki
  • 04/06/06: UCLA group will send out a more "programmer friendly" document at the end of this week
  • 04/13/06: Get "mouse module space" on the BIRN CVS-STEVE
  • 04/21/06: Place NT module on SRB-Bill
  • 04/27/06: Some general coding guidelines agreed upon
    • Follow existing JAVA coding standards
    • All modules have Java docs
    • General code reviews (mostly after AHM)
  • 05/10/06: Subversion for MBAT modules will be set up at UCLA
  • 05/10/06: NEW MEETING DATE WEDNESDAYS 10 AM PST, 12 PM CST, 1 PM EST
  • 05/24/06: MBAT in subversion, users should be able to access
  • 06/07/06: web-services locally for development, registry hosted by BIRN CC
  • 06/14/06: Jeff's been working on Jargon the SRB API-may require changes for the group
  • 06/28/06: Subversion accounts have been set up
  • 07/05/06: Duke plans to publish MBAT accessible data: 4 methods pinpointed for this process, 2 immediate and lower leve, 2 higher level and more appropriately "BIRN"
  • 07/19/06: Demo of MBAT and NeuroTerrain
  • 07/26/06: Jeff B will take on the SRB access...look at current tools, gather requirements from the rest of the group and the Pipeline group, and be primary contact to work with CC to get something that fits our needs.
  • 08/09/06: Review of Vadim's mediator client and web-services, rough plan for improving access, Barlow data needs to be reviewed
  • 08/16/06: Plan set for dealing with Barlow data and goals for moving it to FuGE? format
  • 08/16/06: NT server up at Duke and UCLA, no client access yet
  • 08/16/06: Tentative dates and general goals for in-person programmer meeting at UCSD
  • 08/23/06: Further planning for in-person programmer meeting at UCSD scheduled for Aug 31-Sep 1, Schedule
  • 09/13/06: Gene Expression Data upload tool examined
  • 09/27/06: MBAT versioning, BIRN AHM
  • 11/08/06: NTSDK Integration, BIRN Microarray Data
  • 11/15/06: Cancelled due to lack of attendance
  • 11/22/06: Update/Plans for Atlas Interoperability server
  • 11/29/06: Atlas interop server, NT/MBAT/SA integration, collaborative tools/documentation
  • 12/06/06: Gene Expression, Interoperability server
  • 12/13/06: Data Provenance, Duke prenatal atlas demo, MAGE
  • 12/19/06: NT integration, MAGE
  • 12/20/06: Interoperability Server, Microarray Server, Mediator
  • 01/03/07: Gene Expression, Interoperability server, Infrastructure
  • 01/10/07: EMAGE, Embryo Atlas
  • 01/17/07: Project Update, Long-term Hardware needs
  • 01/24/07: Atlas Interoperability, BIRN Microarray server, March AHM topics
  • 01/31/07: Atlas Interoperability, March AHM topics, Others
  • 02/07/07: New features added to Microarray GeneExpression and Microarray upload site, Future plan for GeneExpression Database, Update on Interop Atlas Server
  • 02/21/07: Mouse AHM, MBAT release, Interoperability atlas server, Interop Atlas Demo at AMH
  • 02/28/07: Interoperability Server API, GE Migration Plan & Prep Work
  • 03/21/07: Follow up on task list, collatborative resources, interop API, BIRNLex browsing tool, ontology term mapping, and ABA integration
  • 04/04/07: Integration with other data types, HID, others.
  • 04/11/07: CCDB, In-Person developer meeting, MAGE update
  • 04/18/07: Interop Server, SRB Access, NeuroTerrain server and protocol
  • 05/02/07: In-person programmer meeting, Common BIRN data repository, XCEDE, MAGE, Concept-based Query and Query API
  • 05/09/07: MBAT feature, Visant Builder and Mediator, Concept-based query
  • 05/16/07: MAGE entries and BIRNLex terms mapping update, MAGE COnversion update, ABA Demo
  • 05/23/07: MBAT web-start version, MBAT bundle in Mac, Interop Server API, ArcIMS
  • 05/30/07: MBAT demo, MABT web-start version and SRB
  • 06/13/07: MBAT/ABA demo, CCDB Update, MAGE update, NeuroCommon
  • 06/20/07: In-Person Programmer meeting, Interop Server, Zoomify/RDF/SPARQL
  • 06/25-26/07: In-Person Programmer Meeting Summary
  • 07/18/07: Progress on BIRNLex/Bonfire and the status of tasks from the in-person programmers meeting
  • 07/25/07: Concept Mapper, status update
  • 08/01/07: BIRNLex data sources, Mediator search, status update
  • 08/08/07: No meeting
  • 08/22/07: Meeting cancelled
  • 08/29/07: No meeting
  • 09/05/07: Status update
  • 09/12/07: No meeting
  • 09/21/07: ABA/Google Map API integration, new MBAT design
  • 09/26/07: In-programmer meeting topics in AHM, and status update
  • 11/28/07: Integration of 3D data from Duke
  • 12/05/07: Discussion of uploading and downloading 3D application for Duke and CCDB data
  • 12/19/07: Discussion of Carl's algorithm, volume voxel conversion

Mouse AHM, MBAT release, Interoperability atlas server, Interop Atlas Demo at AMH

Attachment sort Action Size Date Who Comment
Programmers03_09_06.doc manage 45.5 K 11 Mar 2006 - 00:44 JylBoline 03/07/06: how to handle participation and proceed from here
Programmers03_16_06.doc manage 35.0 K 22 Mar 2006 - 03:02 JylBoline 03/16/06: some feedback on plan, discussion of registration, updates
Programmers03_23_06.doc manage 34.5 K 24 Mar 2006 - 02:00 JylBoline 03/23/06: mostly Ilya and UCLA group discussion of modularity plans
Programmers03_30_06.doc manage 21.5 K 03 Apr 2006 - 18:22 SteveAnderson UCSD and Drexel tasks, some discussion of registration
Programmers04_06_06.doc manage 35.0 K 07 Apr 2006 - 03:12 JylBoline 04/06/06: modules and functionlaity of XML format for atlas exchange
Programmers04_13_06.doc manage 48.0 K 14 Apr 2006 - 01:01 JylBoline 04/13/06: overview of new document, stress importance of truly modular build
Programmers04_21_06.doc manage 36.5 K 25 Apr 2006 - 01:29 JylBoline 04/21/06: exploration of module storage, credits
Programmers04_27_06.doc manage 36.5 K 29 Apr 2006 - 00:59 JylBoline 04/27/06: guidelines, specific modules
Programmers05_5_06.doc manage 36.5 K 10 May 2006 - 20:05 JylBoline 05/05/06: overview of webservices set up for CCDB by Willy
Programmers05_10_06.doc manage 38.0 K 10 May 2006 - 21:56 JylBoline 05/10/06: usability, testing and programming meeting plan
Programmers05_17_06.doc manage 31.5 K 17 May 2006 - 19:43 JylBoline 05/17/06: boolean filters, plans to examine MBAT as group
Programmers05_24_06.doc manage 35.0 K 01 Jun 2006 - 18:14 JylBoline 05/24/06: MBAT in subversion priority, file formats, user mock ups
Programmers06_07_06.doc manage 36.5 K 08 Jun 2006 - 01:08 JylBoline 06/07/06: integration with NT, general web-services discussion
Programmers06_14_06.doc manage 31.5 K 14 Jun 2006 - 19:54 JylBoline 06/14/06: Expression API, SRB Jargon API
Programmers06_21_06.doc manage 37.0 K 21 Jun 2006 - 19:33 JylBoline 06/21/06: Jibber, gene expression web-services, SRB API
Programmers06_28_06.doc manage 36.5 K 29 Jun 2006 - 01:15 JylBoline 06/28/06: SRB access of large volumes, NT, and MBAT
Programmers07_05_06.doc manage 36.5 K 19 Jul 2006 - 23:46 JylBoline 07/05/06: Client access to SRB, NT integration, SRB API discussion
Programmers07_12_06.doc manage 35.5 K 19 Jul 2006 - 23:48 JylBoline 07/12/06: junit testing, NT code in windows, testing of SRB and authentification
Programmers07_19_06.doc manage 33.0 K 19 Jul 2006 - 23:56 JylBoline 07/19/06: Demos-MBAT/NT, coordinates discussion, meeting discussion
Programmers07_26_06.doc manage 42.5 K 02 Aug 2006 - 00:01 JylBoline 07/25/06: CCDB access to SRB and related issues
Programmers08_02_06.doc manage 42.5 K 02 Aug 2006 - 20:38 JylBoline 08/02/06: SRB, mediator web-services client, integration of NT/MBAT and Duke data
Programmers08_09_06.doc manage 43.0 K 10 Aug 2006 - 21:53 JylBoline 08/09/06: Mediator client/webservices, barlow data and GE CDM
Programmers08_16_06.doc manage 43.5 K 16 Aug 2006 - 18:58 JylBoline 08/16/06: Mediator query, NT server/client, in-person meeting
Programmers08_23_06.doc manage 51.0 K 23 Aug 2006 - 20:38 JylBoline 08/23/06: In person meeting planning, Duke data and MBAT
MouseAtlasProgrammerMtg.doc manage 22.5 K 30 Aug 2006 - 17:21 SteveAnderson  
Programmers09_13_06.doc manage 46.5 K 13 Sep 2006 - 22:36 JylBoline 09/13/06: GE upload tool
Programmers09_27_06.doc manage 47.5 K 27 Sep 2006 - 18:22 JylBoline 09/27/06: MBAT versioning and AHM scheduling
Programmers10_04_06.doc manage 49.0 K 18 Oct 2006 - 23:34 JylBoline 10/04/06: NT Server and Mediator
Programmers10_18_06.doc manage 51.0 K 18 Oct 2006 - 23:34 JylBoline 10/18/06: Planning for the AHM and programmers meeting
Programmers11_08_06.doc manage 27.5 K 09 Nov 2006 - 23:28 QueenieNg 11/08/06: NTSDK Integration, BIRN Microarray Data
Programmers11_22_06.doc manage 41.5 K 22 Nov 2006 - 19:20 SteveAnderson  
Programmers11_29_06.doc manage 43.0 K 29 Nov 2006 - 20:33 SteveAnderson 11/29/06: Atlas interop, NT/MBAT/SA Integration, Collaborative Environment
Programmers12_13_06.doc manage 27.5 K 13 Dec 2006 - 20:12 QueenieNg 12/13/06: Data Provenance, Duke prenatal atlas demo, MAGE
Programmers12_06_06.doc manage 26.0 K 14 Dec 2006 - 00:15 QueenieNg 12/06/06 Gene Expression, Interoperability server
DrexelMeeting12_19_06.doc manage 28.5 K 21 Dec 2006 - 18:27 QueenieNg 12/19/06: NT integration, MAGE
Programmers12_20_06.doc manage 29.0 K 21 Dec 2006 - 06:18 QueenieNg 12/20/06: Interoperability Server, Microarray Server, Mediator
Programmers01_03_07.doc manage 27.0 K 03 Jan 2007 - 19:51 QueenieNg 01/03/07: Gene Expression, Interoperability Server, Infrastructure
Programmers01_10_07.doc manage 47.0 K 12 Jan 2007 - 22:27 QueenieNg 01/10/07: EMAGE, Embryo Atlas
Programmers01_17_07.doc manage 26.5 K 17 Jan 2007 - 19:29 QueenieNg 01/17/07: Project Update, Long-term Hardware needs
Programmers01_24_07.doc manage 28.0 K 24 Jan 2007 - 19:46 QueenieNg 01/24/07: Atlas Interoperability, BIRN Microarray server, March AHM topics
Programmers01_31_07.doc manage 26.5 K 31 Jan 2007 - 19:16 QueenieNg 01/31/07: Atlas Interoperability, March AHM topics
Programmers02_07_07.doc manage 27.5 K 07 Feb 2007 - 20:02 QueenieNg New features added to Microarray GeneExpression?? and Microarray upload site, Future plan for GeneExpression?? Database, Update on Interop Atlas Server
Programmers02_21_07.doc manage 27.5 K 21 Feb 2007 - 22:08 QueenieNg Mouse AHM, MBAT release, Interoperability atlas server, Interop Atlas Demo at AMH
Programmers02_28_07.doc manage 42.0 K 28 Feb 2007 - 21:58 QueenieNg Interoperability Server API, GE Migration Plan
Programmers03_21_07.doc manage 40.5 K 21 Mar 2007 - 18:51 QueenieNg Follow up on task list, collatborative resources, interop API, BIRNLex browsing tool, ontology term mapping, and ABA integration
Programmers04_04_07.doc manage 38.0 K 06 Apr 2007 - 17:23 QueenieNg Integration with other data types, HID, others
Programmers04_11_07.doc manage 24.5 K 14 Apr 2007 - 06:44 QueenieNg CCDB, In-Person developer meeting, MAGE update
Programmers04_18_07.doc manage 27.0 K 18 Apr 2007 - 21:31 QueenieNg Interop Server, SRB Access, NeuroTerrain? server and protocol
Programmers05_02_07.doc manage 29.0 K 03 May 2007 - 23:02 QueenieNg In-person programmer meeting, Common BIRN data repository, XCEDE, MAGE, Concept-based Query and Query API
Programmers05_09_07.doc manage 28.0 K 10 May 2007 - 18:09 QueenieNg MBAT feature, Visant Builder and Mediator, Concept-based query
Programmers05_16_07.doc manage 33.5 K 17 May 2007 - 15:38 QueenieNg MAGE entries and BIRNLex terms mapping update, MAGE COnversion update, ABA Demo
Programmers05_23_07.doc manage 36.0 K 23 May 2007 - 23:51 QueenieNg MBAT web-start version, MBAT bundle in Mac, Interop Server API, ArcIMS
Programmers05_30_07.doc manage 33.5 K 31 May 2007 - 15:28 QueenieNg MBAT demo, MABT web-start version and SRB
Programmers06_13_07.doc manage 35.0 K 14 Jun 2007 - 15:11 QueenieNg MBAT/ABA demo, CCDB Update, MAGE update, NeuroCommon
Programmers06_20_07.doc manage 36.5 K 28 Jun 2007 - 17:52 QueenieNg In-Person Programmer meeting, Interop Server, Zoomify/RDF/SPARQL
Programmers06_25-26_07.doc manage 42.0 K 28 Jun 2007 - 18:10 QueenieNg In-Person Programmer Meeting Summary
Programmers07_18_07.doc manage 35.5 K 19 Sep 2007 - 15:10 QueenieNg Progress on BIRNLex/Bonfire and the status of tasks from the in-person programmers meeting
Programmers07_25_07.doc manage 36.5 K 19 Sep 2007 - 15:10 QueenieNg Concept Mapper, status update
Programmers08_01_07.doc manage 36.5 K 19 Sep 2007 - 15:11 QueenieNg BIRNLex data sources, Mediator search, status update
Programmers09_21_07.doc manage 38.0 K 21 Sep 2007 - 16:16 QueenieNg ABA/Google Map API integration, new MBAT design, status update
Programmers09_26_07.doc manage 38.0 K 26 Sep 2007 - 18:24 QueenieNg In-programmer meeting topics in AHM, and status update
Programmers11_28_07.doc manage 29.0 K 29 Nov 2007 - 22:25 QueenieNg Integration of 3D data from Duke
Programmers12_05_07.doc manage 36.0 K 19 Dec 2007 - 22:51 QueenieNg Discussion of uploading and downloading 3D application for Duke and CCDB data
Programmers12_19_07.doc manage 28.0 K 19 Dec 2007 - 22:58 QueenieNg 12/19/07: Discussion of Carl's algorithm, volume voxel conversion

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