Synopsis and Documentation of the 2006 Mouse Mouse AHM

• 2006mAHMreport.doc: Report from the 2006 Mouse AHM
• Synopsis.xls: Synopsis of items needed as pointed out at the Mouse AHM

May 30, 2006

PI presentations on Progress and Priorities:

• Togaslidehandouts.pdf: Arthur Toga
• NissanovAccomplishmentsActions.ppt: Yoni Nissanov
• MarksMsBIRNahm.ppt: Mark Ellisman
• Jacobs.ppt: Russ Jacobs
• MBAT_GRP_Rob2006.ppt: RW Williams (includes genetic reference populatons)

Research Models Progress/Background:

• MBAT_GRP_Rob2006.ppt: RW Williams: use of genetic reference populatons and relations with MBAT.
• DPRICE_MouseAHM2006_Twiki.pdf: Diana Price: Parkinsonian animal model: The alpha-synuclein project
• CBXmatrophyMBIRN.ppt: Allan MacKenzie-Graham: Cerebellar Cortex Atrophy

Use Cases for data integration into mouse BIRN infrastructure:

• Microarray_Gene_expression_data_AHM2006.ppt: Daniel Sforza: Microarray data
• MBIRNAHM_2006_1.ppt: Maryann Martone: Cell workflow
• MBIRNAHM_2006_2.ppt: Maryann Martone: 2D slice workflow
• 2006BIRN-AllHandsMeeting.ppt: Erh-Fang Lee: Mapping 2D slices to 3D atlases
• mBIRN-Ruffins.ppt: Seth Ruffins: Atlas of Embyrionic Development workflw
• NissanovAlignmenttalk.ppt: Yoni Nissanov: 2.5 D alignment to 3D atlas

May, 31 2006

Finding and getting data and information out of the BIRN

• OntologyReport.ppt: Maryann Martone: Ontology report and overview

Tool Integration Session

• May30_2006AHm_Wong.ppt: Willy Wong: integrating CCDB with MBAT
• MBAT_infrastructure.ppt: Ilya Zaslavsky: MBATand atlasing

Action Items and Timelines

• DPRICE_MouseAHM2006_actionitems.ppt: Diana Price: Action Items for alpha-synuclein
• EAEtimeline2006MBIRNAHM.ppt: Allan MacKenzie-Graham: EAE Action items and timeline
• tet-APPmice-BIRN.ppt: Joanna Jankowsky: Alzheimer's APP action items for next year
• DI_Deliverables.ppt: Maryann Martone: Data integration action items and timelines

Guest Speaker

• MBIRN_06.ppt: Jingyang Zhang: "Diffusion Tensor Imaging of Mouse Brains"

June 1, 2006

Atlasing group

• MBATProgrammersMeeting.ppt: Ilya Zaslavsky: Architecture and meeting goals for the atlasing group
• MouseBIRN_high-level_arch_BP.ppt: Bret Peterson: Atlasing direction overview

• MBATProgrammersMeeting.ppt: Notes and action items from Programmer's meeting

Ontology group

Attachment	Action	Size	Date	Who	Comment
Togaslidehandouts.pdf	manage	1600.2 K	30 May 2006 - 16:40	JylBoline	Arthur Toga's progress and prioirities presentation
CBXmatrophyMBIRN.ppt	manage	6998.0 K	30 May 2006 - 17:27	AllanMackenzieGraham	MacKenzie-Graham Cerebellar Cortex Atrophy Presentation
DPRICE_MouseAHM2006_Twiki.pdf	manage	5250.9 K	30 May 2006 - 19:19	MouseBIRN	Continued multivariate studies of a Parkinsonian animal model: The alpha-synuclein project
MBAT_GRP_Rob2006.ppt	manage	9497.5 K	30 May 2006 - 21:28	MouseBIRN	RW Williams presentation on the use of genetic reference populatons and relations with MBAT.
2006BIRN-AllHandsMeeting.ppt	manage	6205.5 K	30 May 2006 - 22:24	EhrfangLee	Erh-Fang Lee : mapping 2D slices to 3D atlases
mBIRN-Ruffins.ppt	manage	7384.0 K	30 May 2006 - 23:09	MouseBIRN	Atlas of Embyrionic Development workflw
Microarray_Gene_expression_data_AHM2006.ppt	manage	1807.0 K	31 May 2006 - 05:13	DanielSforza	Daniel Sforza presentation on Microarray data
EAEtimeline2006MBIRNAHM.ppt	manage	702.0 K	31 May 2006 - 22:19	AllanMackenzieGraham	EAE Action items and timeline
tet-APPmice-BIRN.ppt	manage	93.5 K	31 May 2006 - 22:49	JylBoline	Joanna Jankowsky: Alzheimer's APP action items for next year
NissanovAccomplishmentsActions.ppt	manage	41.5 K	31 May 2006 - 22:50	JylBoline	Yoni Nissanov's progress and priorities presentation
NissanovAlignmenttalk.ppt	manage	23585.0 K	31 May 2006 - 22:54	JylBoline	Yoni Nissanov: 2.5 D alignment to 3D atlas
MBATProgrammersMeeting.ppt	manage	87.5 K	01 Jun 2006 - 22:20	JylBoline	Notes and action items from Programmer's meeting
MouseBIRN_high-level_arch_BP.ppt	manage	81.0 K	01 Jun 2006 - 17:22	JylBoline	Bret's presentation for the atlasing group
DI_Deliverables.ppt	manage	693.5 K	01 Jun 2006 - 18:26	JylBoline	Maryann Martone: Data integration action items and timelines
May30_2006AHm_Wong.ppt	manage	205.5 K	01 Jun 2006 - 18:27	JylBoline	Willy Wong: integrating CCDB with MBAT
OntologyReport.ppt	manage	2218.0 K	01 Jun 2006 - 18:29	JylBoline	Maryann Martone: Ontology report and overview
MBAT_infrastructure.ppt	manage	947.0 K	01 Jun 2006 - 18:32	JylBoline	Ilya Zaslavsky: MBATand atlasing
MBIRN_06.ppt	manage	17143.0 K	07 Jun 2006 - 18:15	JylBoline	Jingyang Zhang:
DPRICE_MouseAHM2006_actionitems.ppt	manage	821.5 K	07 Jun 2006 - 22:57	JylBoline	Diana Price: Action Items for alpha-synuclein
Jacobs.ppt	manage	367.5 K	07 Jun 2006 - 22:58	JylBoline	Russ Jacobs' progress and priorities presentation
MBIRNAHM_2006_1.ppt	manage	17482.0 K	07 Jun 2006 - 23:13	JylBoline	Maryann Martone: Cell workflow
MBIRNAHM_2006_2.ppt	manage	18587.0 K	07 Jun 2006 - 23:14	JylBoline	Maryann Martone: 2D slilce workflow
MarksMsBIRNahm.ppt	manage	2876.5 K	16 Jun 2006 - 22:32	JylBoline	Mark Ellisman's progress and prioirities presentation
Synopsis.xls	manage	25.0 K	19 Jun 2006 - 22:48	JylBoline	Synopsis of items needed as pointed out at the Mouse AHM
2006mAHMreport.doc	manage	248.0 K	20 Oct 2006 - 15:28	JylBoline	Report from the 2006 Mouse AHM