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MouseBIRNAtlasing
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---++Overview This workgroup has been formed to tackle creating a neuroinformatics framework using multimodal digital atlases to coordinate access to disparate forms of data and present them in a clear and concise manner. These atlases can be built to encompass many different kinds of data, enabling visualization, data analyses, and information retrieval in a relatively intuitive setting. --- --- ---++Goals * Exchange of: * Atlas state * Metadata * Data (images, segmentations, etc) * Locations referenced via: * Spatial coordinates * Ontology * Verbal descriptions * Rat atlas as proxy (images and segmentation-scalable into mouse atlas) * Mechanisms of integration across atlas clients * Specification of state of atlas client * API for initializing exchange service and submitting and retrieving states --- --- ---++Planning ---+++++Plans and Action Items * [[http://www.loni.ucla.edu/twiki/bin/view/MouseBIRN/AtlasingWorkshopDay][Atlasing Plan from workshop day at the BIRN AHM]] (10/26/05) * Atlas Plan and Action Items generated at June 2005 mouse AHM: (06/01/05) * [[%ATTACHURL%/atlas_workplan_6_1_05.doc][atlas_workplan_6_1_05.doc]]: Atlasing Plan and Action items generated at meeting, word doc * [[%ATTACHURL%/atlas_workplan_6_1_05.pdf][atlas_workplan_6_1_05.pdf]]: Atlasing Plan and Action items generated at meeting ---+++++Working Areas *[[AtlasingTOC][Table of Contents of Working Pages]]* * [[AtlasingUseCases][Atlasing Use Case Page]] * [[AtlasStateExchange][Exchange of State between Atlases Page]] * [[AtlasStateExchange_2007][Exchange of State between Atlases Focus on Server in 2007]] * [[StructureHierarchyPage][Structure Hierarchies Page]] * [[BioAspectsAtlasing][Biological Aspects of Atlasing Page]] * [[MouseRegistration][Issues of Registration Page]] * [[MBATWorkPage][MBAT Work Page]] * [[CommonDataModel][Common Data Models Working Pages]] --- --- ---++Other important information and links * [[SiteAtlasInformation][Site specific information on Atlasing Tools]] * Download beta version of the Mouse BIRN Atlasing Toolkit (MBAT) (11/18/05) * This program can be found on the [[http://www.nbirn.net/downloads/mbat/index.shtm][BIRN Portal]] on the MBAT download page. It is offered as a .zip package, a .tgz package, or simply download the whole MBAT program folder. * [[MouseBIRNDAtlasingRelatedResources][Atlasing Related Resources of Interest]] --- --- ---++Updates/Progress * [[%ATTACHURL%/Atlasstatus11_05.doc][Atlasstatus11_05.doc]]: Status of atlasing project and related issues (11/17/05) --- ---
