Overview

Goals

• Exchange of:
  • Atlas state
  • Metadata
  • Data (images, segmentations, etc)

• Locations referenced via:
  • Spatial coordinates
  • Ontology
  • Verbal descriptions
  • Rat atlas as proxy (images and segmentation-scalable into mouse atlas)

• Mechanisms of integration across atlas clients
  • Specification of state of atlas client
  • API for initializing exchange service and submitting and retrieving states

Planning

Plans and Action Items

• Atlasing Plan from workshop day at the BIRN AHM (10/26/05)
• Atlas Plan and Action Items generated at June 2005 mouse AHM: (06/01/05)
  • atlas_workplan_6_1_05.doc: Atlasing Plan and Action items generated at meeting, word doc
  • atlas_workplan_6_1_05.pdf: Atlasing Plan and Action items generated at meeting

Working Areas

• Atlasing Use Case Page
• Exchange of State between Atlases Page
• Exchange of State between Atlases Focus on Server in 2007
• Structure Hierarchies Page
• Biological Aspects of Atlasing Page
• Issues of Registration Page
• MBAT Work Page
• Common Data Models Working Pages

Other important information and links

• Site specific information on Atlasing Tools
• Download beta version of the Mouse BIRN Atlasing Toolkit (MBAT) (11/18/05)
  • This program can be found on the BIRN Portal on the MBAT download page. It is offered as a .zip package, a .tgz package, or simply download the whole MBAT program folder.
• Atlasing Related Resources of Interest

Updates/Progress

• Atlasstatus11_05.doc: Status of atlasing project and related issues (11/17/05)

Attachment	Action	Size	Date	Who	Comment
atlas_workplan_6_1_05.doc	manage	48.5 K	24 Jun 2005 - 22:28	JylBoline	Atlasing Plan and Action items. Word doc
atlas_workplan_6_1_05.pdf	manage	25.6 K	24 Jun 2005 - 22:30	JylBoline	Atlasing Plan and Action items. pdf
MouseBrainEnvironment.html	manage	9.4 K	14 Jul 2005 - 20:08	AlexandraBadea	A mouse brain study environment
Atlasstatus11_05.doc	manage	62.0 K	21 Nov 2005 - 22:07	JylBoline	Status of atlasing project and related issues