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Return to Mouse BIRN Announcements Page
Milestones for the meeting Go here to REGISTER for the 2007 Mouse BIRN All Hands Meeting Need to share rides to the Airport or get suggestions about the best hotels or restaurants? Go here to post comments about logistics for the meeting This meeting will be held at UCLA
Topics for the Programmers meeting include:
PRESENTATIONS from the 2007 MOUSE AHM
Milestones for the meeting Go here to REGISTER for the 2007 Mouse BIRN All Hands Meeting Need to share rides to the Airport or get suggestions about the best hotels or restaurants? Go here to post comments about logistics for the meeting This meeting will be held at UCLA
- Mouse BIRN meeting Thursday and Friday March 8-9th held on the Covel Commons Grand Horizons Salon A (see map below)
- MBAT programmers meeting will be held Monday and Tuesday the following week, March 12-13th
- in NRB (same building as LONI)
- Mouse-specific Ontology working group meeting Wednesday March 7th in NRB 468 (same building as LONI)
- Map of campus, meeting locations, and area hotels
- Attendees are responsible for parking fees and alcohol at Thursday's dinner
- PARKING: ALL need to stop at the Parking Kiosk (see map), tell them you are going to the Mouse BIRN meeting and you are to park in PSV on Thursday and Friday (8th-9th) for the AHM and Parking lot 9 for the satellite meetings on Wednesday (7th), Monday and Tuesday (12th-13th). They will give you the proper parking permits.
- Download a PowerPoint Template
| March 7, 2007 | |
|---|---|
| Mouse Ontology Working Day | |
| 8:30 AM | Breakfast |
| 9:00 AM - 5:00 PM | Inter-Atlas Anatomy |
| Mouse Strains | |
| Behavioral Paradigms | |
| Review Ontology Tools for BIRN | |
| March 8, 2007 | |||
|---|---|---|---|
| 8:30 AM | BREAKFAST | ||
| 9:00 AM-10:00 AM | What we did and what we will do | PIs | |
| RESEARCH MODEL SESSION | |||
| 10:00 AM-10:30 AM | Research models progress/plans | Diana, Allan, Joanna, Al/Alex, Rob, Daniel | |
| 10:30 AM-12:45 PM | Poster Sessions with Lunch | ||
| 12:45 PM-1:15 PM | Group Discussion and Review of Modified Plans for Research Models | ||
| DATA IN SESSION | |||
| 1:15 PM-2:45 PM | Registration Workflow Session | ||
| 2D Workflow | Asif and Ilya | ||
| 3D Workflow | Allan and Alex | ||
| Integration of Registration Workflows with BIRN Infrastructure | Ilya and Bill | ||
| 2:45 PM-3:00 PM | BREAK | ||
| 3:00 PM-5:00 PM | Data Federation Working Session, users and DB group separate? | Bill | |
| XCEDE for images, MAGE for microarray GE, Upload Scripts and SRB hierarchy/metadata | |||
| 5:00 PM-6:30 PM | Socializing/Happy Hour | ||
| 7:00 PM-9:00 PM | DINNER: Napa Valley Grille | ||
| March 9, 2007 | ||
|---|---|---|
| 8:30 AM | BREAKFAST | |
| INTEGRATION DAY | ||
| 9:00 AM-10:30 AM | BIRNLex-how and when to use it | Maryann |
| 10:30 AM-10:45 AM | BREAK | |
| 10:45 AM-12:15 PM | Atlas Interoperability Session | Ilya |
| 12:15 AM-1:45 PM | LUNCH and Demos of BIRN Atlases | |
| 1:45 PM-3:15 PM | Data Query Session | Vadim, Brian, Jeff, Steve |
| New Tools for mapping and retrieving data via the Mediator | ||
| General BIRN Queries | ||
| Queries, MBAT and the Mediator | ||
| 3:15 PM-3:30 PM | BREAK | |
| 3:30 PM-4:30 PM | Databases and Next Plans for Query with this Infrastructure | Jeff, Ilya |
| 4:30 PM-5:00 PM | Review of Action Items and Timelines | Maryann, Ilya, Arthur/Jyl |
| March 12, 2007-Programmers Meeting | ||
|---|---|---|
| 8:30 AM | Breakfast | |
| 9:00 AM - 10:30 AM | AHM follow-up discussion and image architecture planning | |
| 10:30 AM - 10:45 AM | BREAK | |
| 10:45 AM - 12:15 PM | Plans for Atlas Inter-Op Server | |
| 12:15 PM - 1:00 PM | Lunch | |
| 1:00 PM - 2:00 PM | Plans for other web-based servers | |
| 2:00 PM - 3:30 PM | Parallel Sessions | |
| Portal-based gene expression server | Warping tools (Erh-Fang's tool and Jibber) | |
| 3:30 PM-3:45 PM | BREAK | |
| 3:45 PM - 5:00 PM | Individual implementation problems/testcode/debugging | |
| March 13, 2007-Programmers Meeting | ||
|---|---|---|
| 8:30 AM | Breakfast | |
| 9:00 AM - 11:00 AM | BIRN CC Data Integration, common upload modules and resource allocation | |
| 11:00 AM - 11:15 AM | BREAK | |
| 11:15 AM - 12:15 PM | Hardware Resources Discussion | |
| 12:15 PM - 1:15 PM | Lunch | |
| 1:15 PM - 5:00 PM | Detailed Focus on Atlas Interoperability and Gene Expression Servers, Individual meetings | |
- Review of specs and requirements gathered at the AHM
- Integration of Registration workflows:
- 2D workflow, including Erh-Fang's registration tool with Jibber and NT server
- Gene Expression Data upload
- BIRN Gene Expression Database efforts
- Atlas Interoperability and Server
- Web-based version, evaluation of current resources and best solution
Attachment  | Action | Size | Date | Who | Comment |
|---|---|---|---|---|---|
 2007mAHMschedule.pdf | manage | 10.3 K | 27 Feb 2007 - 23:11 | JylBoline | PDF of schedule |
 Menu.doc | manage | 53.5 K | 05 Mar 2007 - 19:21 | JylBoline | menu for the meeting |
 template_black.ppt | manage | 217.5 K | 07 Mar 2007 - 00:50 | JylBoline | PowerPoint? Template |