Table of Contents

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Fall 2009 Deliverables (Oct 21, 2009)

This document lists the deliverables for each institution to be delivered by Oct 21, 2009.

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CalTech

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Goal

Requirements Specification

Technical Specification

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UCSD

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Goal

1. develop a Viewer workspace rendering plugin for large images via the MapServer
2. redesign AIDB schema and switch to postgres database
3. add JxBrowser to allow embedded browsers in MBAT

Requirements Specification

Technical Specification

MBAT core Open Issues

1. purchase JxBrowser development license

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UT

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Goal

1. develop a Viewer workspace rendering plugin for Phenotype object
2. develop a Viewer workspace rendering plugin for GeneExpression object

Requirements Specification

Technical Specification

1. GeneExpression rendering plugin dependent on 3D Atlas coloring API

MBAT core Open Issues

1. need to define structure vocabulary/ontology

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Duke CIVM

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Goal

1. Large Volume support for NIFTI format (in addition to the current support for Analyze format)
2. Support for read/write access to Large Volume files.
3. Addition of vascular and DTI datasets to Waxholm corpus, in MBAT-compatible format

Requirements Specification

Technical Specification

MBAT core Open Issues

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Drexel

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Goal

1. add zoom level to NT rendering plugin
2. integrate hierarchy graph with NT atlas
3. improve virtual knife controls
4. Waxholm space integration

Requirements Specification

Technical Specification

MBAT core Open Issues

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UCLA LONI

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Goal

Requirements Specification

1. Coordinate space transformation
2. 3D Volume API improvements
   1. dynamical change texture resolution (ie: zoom level)
3. Plug-in interoperability
4. Atlas coloring API
   1. by label
   2. by voxel
5. Hierarchy viewer
   1. tree view
   2. search
6. ABA rendering plugin
7. GENSAT rendering plugin
8. 3D Atlas API improvements
   1. mixed resolution support (label and volume have different dimensions)
   2. mixed datatype support (label and volume have different datatypes)
9. Cache URL data to local file
10. User preferences
    1. unloading workspace/tool plugins

Technical Specification

MBAT core Open Issues

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DarenLee - 09 Jun 2009