Web Services Providers used by MBAT

1. BIRN Miroarry DB
   • API Methods:
     • URI: http://microarray.nbirn.net/get_data.php?
     • Parameters:
       1. cmd=<get_probes|get_my_probes>
       2. user_id=<int>
       3. dset=<all|null>
       4. strain=<string>
       5. keyword=<string>
       6. species=<string>
       7. sex=<string>
       8. stage=<string>
       9. subject_group=<string>
       10. anatomy=<string>
       11. probe_id=<string>
     • example: http://microarray.nbirn.net/get_data.php?cmd=get_probes&user_id=&dset=all&strain=BXD&keyword=CALB1&species=mouse
2. Gensat
   • URI: http://maloney.loni.ucla.edu:8080/axis/GensatSource.jws?wsdl
   • Methods:
     1. getGene(geneSym, geneName, exprLevel, anatStruc, stage, sex)
     2. get2DImage(geneSym, geneName, exprLevel, anatStruc, stage, sex, plane)
     3. getDataTypes(dataSourceID)
3. CCDB
   • Please look up CCDB web site API for SOAP webserivces detail, or SAO.
4. GeneNetwork
   • URI: http://www.genenetwork.org/webqtl/WebQTL.py?
   • Parameters:
     1. cmd=birn
     2. species=XXXX
     3. tissue=XXXX
     4. symbol=XXXX
     5. ProbeId=XXXX
     6. function=XXXX
     7. Strain=XXXX
   • example: http://www.genenetwork.org/webqtl/WebQTL.py?cmd=birn&species=mouse&tissue=Eye&symbol=shh&Strain=BXD1
   • Please visit GeneNetwork Reference Page for more info.
5. ABA
   • URI: http://www.neurocommon.org
   • Access ABA from Neurocommon using RDF/OWL ontology search.
   • Ontology: http://sw.neurocommons.org/2007/aba.owl http://sw.neurocommons.org/2007/annotations.owl