http://www.loni.ucla.edu/twiki/bin/view/SHIVA The SHIVA web of TWiki. TWiki is a Web-Based Collaboration Platform for the Corporate World. en-us Copyright 2009 Laboratory of Neuro Imaging, UCLA. TWiki Administrator [webmaster@loni.ucla.edu] TWiki Administrator [webmaster@loni.ucla.edu] TWiki TWiki.SHIVA http://www.loni.ucla.edu/twiki/bin/view/SHIVA http://www.loni.ucla.edu/twiki/bin/view/SHIVA/WebStatistics?t=2009-11-16T12:33Z Statistics for SHIVA Web Month: Topic views: Topic saves: File uploads: Most popular topic views: Top contributors for topic save and uploads: Nov 2009 2139 0 0 399 ... (last changed by guest) 2009-11-16T12:33Z guest 1.1230 updated major http://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/WebStatistics http://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/WebStatistics http://www.loni.ucla.edu/twiki/bin/view/SHIVA/FileFormats?t=2007-04-12T20:05Z File Formats The following file formats are currently supported by SHIVA. Image volume files Analyze(tm) ( .img, .hdr): http://www.mayo.edu/bir/PDF/ANALYZE75.pdf ... (last changed by HengYuan) 2007-04-12T20:05Z heng 1.8 updated major http://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/FileFormats http://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/FileFormats http://www.loni.ucla.edu/twiki/bin/view/SHIVA/SubversionRepositoryStructure?t=2007-04-11T23:06Z Subversion Repository Structure The Subversion repository location is svn+ssh://cvs.loni.ucla.edu/cvs/map . The following is the directory structure under trunk/ ... (last changed by HengYuan) 2007-04-11T23:06Z heng 1.2 updated major http://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/SubversionRepositoryStructure http://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/SubversionRepositoryStructure http://www.loni.ucla.edu/twiki/bin/view/SHIVA/DOC?t=2007-04-05T18:20Z Shiva Developer Documentation $ Repository Structure : svn+ssh://cvs.loni.ucla.edu/cvs/map $ Plugin Documentation : For developers who wish to write plugins for SHIVA ... (last changed by HengYuan) 2007-04-05T18:20Z heng 1.6 updated major http://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/DOC http://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/DOC http://www.loni.ucla.edu/twiki/bin/view/SHIVA/WebHome?t=2007-03-13T18:16Z SHIVA $ Manual : http://www.loni.ucla.edu/download/SHIVA/SHIVA MAP.pdf $ Download : Release version $ Developer Documentation : SHIVA documentation for developers ... (last changed by HengYuan) 2007-03-13T18:16Z heng 1.20 updated major http://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/WebHome http://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/WebHome http://www.loni.ucla.edu/twiki/bin/view/SHIVA/ServerProtocols?t=2006-11-11T05:09Z Server Protocols ArcIMS ArcXML Programmer's Reference Guide for ArcIMS 9.1 Neuroterrain Atlas Server Network Protocols Web Services Description Language (Axis Client ... (last changed by HengYuan) 2006-11-11T05:09Z heng 1.2 updated major http://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/ServerProtocols http://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/ServerProtocols http://www.loni.ucla.edu/twiki/bin/view/SHIVA/UCFFormat?t=2006-07-07T22:53Z UCF Format Universal Contour Files (UCF) is a format devised at LONI. It is an ascii based file in the following format: Header 384 256 200.000000 200.000000 200 ... (last changed by HengYuan) 2006-07-07T22:53Z heng 1.2 updated major http://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/UCFFormat http://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/UCFFormat http://www.loni.ucla.edu/twiki/bin/view/SHIVA/TMFormat?t=2006-07-07T19:27Z LONI Triangle Model Format This following description is obtained from LONI ShapeTools edu.ucla.loni.ccb.shapeio.tm.parser.TmAsciiShapeParser. The conventional suffix ... (last changed by CraigSchwartz) 2006-07-07T19:27Z craig 1.2 updated major http://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/TMFormat http://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/TMFormat http://www.loni.ucla.edu/twiki/bin/view/SHIVA/LabelIndexFileFormat?t=2006-07-06T23:19Z Label Index File Format Label index files ( .lbl, .txt) are ascii files used by Duff and SHIVA. Each line contains information of the label id, color (optional), ... (last changed by HengYuan) 2006-07-06T23:19Z heng 1.1 updated major http://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/LabelIndexFileFormat http://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/LabelIndexFileFormat http://www.loni.ucla.edu/twiki/bin/view/SHIVA/WebPreferences?t=2006-06-21T06:43Z SHIVA Web Preferences The following settings are web preferences of the SHIVA web. These preferences overwrite the site-level preferences in TWIKIWEB . WIKIPREFSTOPIC ... (last changed by HengYuan) 2006-06-21T06:43Z heng 1.22 updated major http://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/WebPreferences http://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/WebPreferences http://www.loni.ucla.edu/twiki/bin/view/SHIVA/CIVMFormat?t=2006-06-21T06:36Z CIVM Format A CIVM image is consisted of a header file and bunch of files each representing a slice. AKAIK the header file resembles brucker image file format. Header ... (last changed by HengYuan) 2006-06-21T06:36Z heng 1.1 updated major http://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/CIVMFormat http://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/CIVMFormat http://www.loni.ucla.edu/twiki/bin/view/SHIVA/GUI_RC?t=2006-01-06T23:25Z GUI RC is an XML file which describes what the SHIVA frame should look like. It is written in CookSwing. shiva.ShivaGUI class extends JFrame to have an setter for ... (last changed by HengYuan) 2006-01-06T23:25Z heng 1.1 updated major http://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/GUI_RC http://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/GUI_RC http://www.loni.ucla.edu/twiki/bin/view/SHIVA/START_RC?t=2006-01-06T23:24Z STARTUP RC points to an XML list of plugins to be loaded. It should be noted that how SHIVA looks is mainly specified using plugins. It is written in CookXml. shiva ... (last changed by HengYuan) 2006-01-06T23:24Z heng 1.1 updated major http://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/START_RC http://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/START_RC http://www.loni.ucla.edu/twiki/bin/view/SHIVA/StartConfigure?t=2006-01-06T23:15Z In shiva.Main class, there are two global class variables START RC and GUI RC which can be changed to point to different resource file locations before shiva.Main ... (last changed by HengYuan) 2006-01-06T23:15Z heng 1.1 updated major http://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/StartConfigure http://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/StartConfigure http://www.loni.ucla.edu/twiki/bin/view/SHIVA/ShivaConfiguration?t=2006-01-06T23:05Z SHIVA can be configured to have completely different look and feels. 1. Configure startup resource file location. 1. Configure ToggleComamnds 1. Configure menu 1. ... (last changed by HengYuan) 2006-01-06T23:05Z heng 1.1 updated major http://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/ShivaConfiguration http://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/ShivaConfiguration http://www.loni.ucla.edu/twiki/bin/view/SHIVA/Plugin?t=2006-01-06T22:55Z Steps to create a plugin 1. Implement shiva.interfaces.ShivaPlugin . 1. Have public final static String PLUGIN DESCRIPTION "Some Description"; in the class. 1. Define ... (last changed by HengYuan) 2006-01-06T22:55Z heng 1.3 updated major http://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/Plugin http://www.loni.ucla.edu/twiki/bin/rdiff/SHIVA/Plugin