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-- QuangHoang - 02 Jul 2007
| Module | Status | Cleaner | Cleanup | Icon |
|---|---|---|---|---|
| AIR | ||||
| Affine to Rigid | AP | corrected | ||
| Align Linear | AP | corrected | ||
| Align Warp | citation found | AP | corrected | |
| Binarize | AP | corrected | ||
| Binary Mask | citation found | AP | corrected | |
| Binary Math | AP | corrected | ||
| Combine AIR | AP | corrected | ||
| Combine Warp | AP | corrected | ||
| Crop | citation found | AP | corrected | |
| Define Common AIR | AP | corrected | ||
| Determinant Mask | AP | corrected | ||
| Fix Header | AP | corrected | ||
| Fuse | AP | corrected | ||
| Gaussian smoothing | citation found | AP | corrected | |
| Identify | AP | corrected | ||
| Invert AIR | AP | corrected | ||
| Layout | AP | corrected | ||
| Magnify | AP | corrected | ||
| Make Header | AP | corrected | ||
| Overlay Mask | AP | corrected | ||
| Reorient | citation found | AP | corrected | |
| Resize | citation found | AP | corrected | |
| Reslice AIR | citation found | AP | corrected | |
| Reslice Warp | citation found | AP | corrected | |
| Soft Mean | citation found | AP | corrected | |
| cd warp | AP | corrected | ||
| MNI | ||||
| Analyze Image to Minc | emailed - no reply yet | |||
| Mincblur | emailed - no reply yet | |||
| MINC Mask | emailed - no reply yet | |||
| Mincresample | emailed - no reply yet | |||
| Minc Math | emailed - no reply yet | |||
| Minc to Analyze Image | emailed - no reply yet | |||
| N3 correction | citation found | |||
| N3 estimate | citation found | |||
| N3 evaluate | citation found | |||
| Print All Labels | emailed - no reply yet | |||
| Raw to MINC | emailed - no reply yet | |||
| XFM Concatenate | emailed - no reply yet | |||
| XFM Invert | emailed - no reply yet | |||
| FSL | ||||
| AVW CC | ||||
| AVW Change Filetype | ||||
| AVW Complex | ||||
| AVW Fill | ||||
| AVW Interleave | ||||
| AVW Merge | citation found | |||
| AVW Region of Interest | ||||
| AVW to ASCII | ||||
| BET | citation found | |||
| BET All | citation found | |||
| BET Func | citation found | |||
| Flirt | citation found | ST | corrected | |
| MCFLIRT | citation found | QH | corrected | |
| AVW CP Geom | ||||
| BrainSuite | ||||
| Bias Field Corrector | citation found | |||
| Brain Surface Extractor | citation found | |||
| Cerebro | shattuck: hold off on it | |||
| cortex07 | shattuck: hold off on it | |||
| duff surface generator | citation found | |||
| p-harmonic maps | citation found | |||
| Partial Volume Classifier | citation found | |||
| Skullfinder | citation found | |||
| topology correction algorithm | citation found | |||
| ITK | ||||
| 3D Deformable Registration | emailed - no reply yet | |||
| 3D Deformable Model Segmentation | emailed - no reply yet | |||
| 3D Multi-modality B-spline Deformable Registration | emailed - no reply yet | |||
| Freesurfer | ||||
| MRIs Fix Topology | citation found | |||
| MRIs Inflate | citation found | |||
| MRIs Smooth | citation found | |||
| MRIs Sphere | citation found | |||
| MRI CA Label | citation found | ST | corrected | |
| MRI CA Normalize | cit found but unsure | ST | corrected | |
| MRI CA Register | cit found but unsure | ST | corrected | |
| MRI Convert | cit found but unsure | ST | corrected | |
| MRI Edit WM w/Aseg | cit found but unsure | ST | corrected | |
| MRI EM Register | cit found but unsure | ST | corrected | |
| MRI Fill | citation found | ST | corrected | |
| MRI Mask | citation found | ST | corrected | |
| MRI Normalize | citation found | ST | corrected | |
| MRI Remove Neck | citation found | |||
| MRI Segment | citation found | |||
| MRI SegStats? | citation found | |||
| MRI Tessellate | citation found | |||
| MRI Watershed | citation found | |||
| LONI | ||||
| 3D MI | citation found | |||
| Analyze to Raw | citation found | |||
| Assess Alignment | Alex Cunha | |||
| Brain Parser | No Author | |||
| Filtermesh | Boris Gutman | |||
| Format 4 Classification | Boris Gutman | |||
| Format 4 training | Boris Gutman | |||
| Geodesic Distance | citation found | |||
| Geodesic Mapping | citation found | |||
| Geodesic sulcal depth | citation found | |||
| HP Harmonic Mapping | citation found | |||
| HP Init Mapping w/ Label | citation found | |||
| HP Landmark Curves | citation found | |||
| HP Region Label | cit found but unsure | |||
| IMG to 3DM | No Author | |||
| IRMA Report | Alex Cunha | |||
| Image Registration | Alex Cunha | |||
| Implicit Surface Representation | citation found | |||
| Linear Interpolation Map to Mesh | citation found | |||
| MakeMesh? | Boris Gutman | |||
| Mean Curvature Flow with Barrier Force | cit found but unsure | |||
| Mesh to DTGrid | cit found but unsure | |||
| MeshSimplify? | Boris Gutman | |||
| Rank Results | Alex Gutman | |||
| SPHARM | cit found but unsure* | |||
| SVM classify | Boris Gutman | |||
| SVM train | Boris Gutman | |||
| Sulcal Fundi Extraction | Duygu Tosun | |||
| Sulcal Segmentation | citation found | |||
| Surface File Format Converter | Duygu Tosun | |||
| Surface Mapping | citation found | |||
| Surface curvature features | citation found | |||
| Volume to Surface Mapping | citation found | |||
| parameter | citation found | |||